TCONS_00019432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019432
Unique NameTCONS_00019432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019432 ID=TCONS_00019432|Name=TCONS_00019432|organism=Clytia hemisphaerica|type=transcript|length=448bp
GACAAATCAAGCTATCGTTCCATTCATCGTTCAAATCTGAAGTGTTCTCA
CCAAAAGATTCCGTTGTCAACAAAGGTATATACCTTTTTCAAACAATCAC
AGTTAATGGCAAACGTCTCAACATATTTTACGACAATGGTTGCTCTGATT
TCATCCTGTCAACCAAGGCTGTCAATCTTCTTGGATCCTCTGCAACCAAA
GTCAATAGTGAACCGATCAATCTGGGAGGTGTTGGCAACTCAGTTACAGT
TTCATCAGGAGCATACATTGTAACACTTCCACTCCACGATGGCACAAAAG
TCACCATGTCAGGCATCTGCTTGGATCAGATTACTTCCAGGTTTCCAATT
TATCCACTTCGAGAAGTCAAGGAAGATATTGCCAATCACCACAAGTCGTC
TGGAGAAACTACCACTCTACCTGAACTTCCACCTATCGTTGGTGGAGA
Run BLAST on NCBI

protein sequence of TCONS_00019432-protein

>TCONS_00019432-protein ID=TCONS_00019432-protein|Name=TCONS_00019432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
QIKLSFHSSFKSEVFSPKDSVVNKGIYLFQTITVNGKRLNIFYDNGCSDF
ILSTKAVNLLGSSATKVNSEPINLGGVGNSVTVSSGAYIVTLPLHDGTKV
TMSGICLDQITSRFPIYPLREVKEDIANHHKSSGETTTLPELPPIVGG
Run BLAST on NCBI

transcript from alignment at sc0000326:53879..54326

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019432 ID=TCONS_00019432|Name=TCONS_00019432|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0000326:53879..54326 (Clytia hemisphaerica)
TCTCCACCAACGATAGGTGGAAGTTCAGGTAGAGTGGTAGTTTCTCCAGA
CGACTTGTGGTGATTGGCAATATCTTCCTTGACTTCTCGAAGTGGATAAA
TTGGAAACCTGGAAGTAATCTGATCCAAGCAGATGCCTGACATGGTGACT
TTTGTGCCATCGTGGAGTGGAAGTGTTACAATGTATGCTCCTGATGAAAC
TGTAACTGAGTTGCCAACACCTCCCAGATTGATCGGTTCACTATTGACTT
TGGTTGCAGAGGATCCAAGAAGATTGACAGCCTTGGTTGACAGGATGAAA
TCAGAGCAACCATTGTCGTAAAATATGTTGAGACGTTTGCCATTAACTGT
GATTGTTTGAAAAAGGTATATACCTTTGTTGACAACGGAATCTTTTGGTG
AGAACACTTCAGATTTGAACGATGAATGGAACGATAGCTTGATTTGTC

Coding sequence (CDS) from alignment at sc0000326:53879..54326

>TCONS_00019432 ID=TCONS_00019432|Name=TCONS_00019432|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000326:53879..54326 (Clytia hemisphaerica)
TCCACCAACGATAGGTGGAAGTTCAGGTAGAGTGGTAGTTTCTCCAGACG
ACTTGTGGTGATTGGCAATATCTTCCTTGACTTCTCGAAGTGGATAAATT
GGAAACCTGGAAGTAATCTGATCCAAGCAGATGCCTGACATGGTGACTTT
TGTGCCATCGTGGAGTGGAAGTGTTACAATGTATGCTCCTGATGAAACTG
TAACTGAGTTGCCAACACCTCCCAGATTGATCGGTTCACTATTGACTTTG
GTTGCAGAGGATCCAAGAAGATTGACAGCCTTGGTTGACAGGATGAAATC
AGAGCAACCATTGTCGTAAAATATGTTGAGACGTTTGCCATTAACTGTGA
TTGTTTGAAAAAGGTATATACCTTTGTTGACAACGGAATCTTTTGGTGAG
AACACTTCAGATTTGAACGATGAATGGAACGATAGCTTGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010919XLOC_010919Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019432-proteinTCONS_00019432-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019432-exon-sc0000326-1491911889:53879..54326TCONS_00019432-exon-sc0000326-1491911889:53879..54326Clytia hemisphaericaexon
TCONS_00019432-exon-sc0000326-1510915933:53879..54326TCONS_00019432-exon-sc0000326-1510915933:53879..54326Clytia hemisphaericaexon
TCONS_00019432-exon-sc0000326-1575043694:53879..54326TCONS_00019432-exon-sc0000326-1575043694:53879..54326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:53879..54326 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33598	1.73706	0.840371	0.986606	0	0.316374	0	0.178668	0	0	0	0.0988618	0.0987244	0	0	0.0904566	0.111435	0.114217	0	0	0.143523	0	0.340402	0.928425	0	0	0	0	0.16476	0.167864
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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