TCONS_00019427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019427
Unique NameTCONS_00019427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019427 ID=TCONS_00019427|Name=TCONS_00019427|organism=Clytia hemisphaerica|type=transcript|length=530bp
aatttttccaacccctcccccgtttatttgacACCTAAGAGTACTACGCA
AAAATctgtaatattttgaaaattgttgagAAGAGGAGGGTAAAATTCGT
TGTATATAGACAAATGATTTGAGagagttattattttttaattctaGAGA
AAAAATGTTCGTACTTTACAAAACTTAAGGGtgcaaatttggcttttttt
cacATCCGGTGGATCTCCGgcttccaaaataataaaaattagttttcagt
GTTTCGTTTACATAAATGTCACATTTCGAGTAATCAAACCACACAAAGTT
CACATACCAAATCGTTTTTTTCCAACAGGAACAAATCACCAGAAATTTCG
AAGATTGAGGTCAAGTTTGGATACGTACGTCAAAGAAGTCACAGTGGAAT
CATGGAAATCGCGATAAGAATTGCtatttttgtattatcaatggtcGGTT
GGTGGCTGACCGCGACAGTTGATTTACTatagaaatgctgaaaatcataa
aattttatgtttccgATGAGCAAATACANA
Run BLAST on NCBI

transcript from alignment at sc0000326:25677..26206

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019427 ID=TCONS_00019427|Name=TCONS_00019427|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at sc0000326:25677..26206 (Clytia hemisphaerica)
TNTGTATTTGCTCATcggaaacataaaattttatgattttcagcatttct
atAGTAAATCAACTGTCGCGGTCAGCCACCAACCgaccattgataataca
aaaataGCAATTCTTATCGCGATTTCCATGATTCCACTGTGACTTCTTTG
ACGTACGTATCCAAACTTGACCTCAATCTTCGAAATTTCTGGTGATTTGT
TCCTGTTGGAAAAAAACGATTTGGTATGTGAACTTTGTGTGGTTTGATTA
CTCGAAATGTGACATTTATGTAAACGAAACactgaaaactaatttttatt
attttggaagcCGGAGATCCACCGGATgtgaaaaaaagccaaatttgcaC
CCTTAAGTTTTGTAAAGTACGAACATTTTTTCTCtagaattaaaaaataa
taactctCTCAAATCATTTGTCTATATACAACGAATTTTACCCTCCTCTT
ctcaacaattttcaaaatattacagATTTTTGCGTAGTACTCTTAGGTgt
caaataaacgggggaggggttggaaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010914XLOC_010914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019427-exon-sc0000326-1491911889:25677..26206TCONS_00019427-exon-sc0000326-1491911889:25677..26206Clytia hemisphaericaexon
TCONS_00019427-exon-sc0000326-1510915933:25677..26206TCONS_00019427-exon-sc0000326-1510915933:25677..26206Clytia hemisphaericaexon
TCONS_00019427-exon-sc0000326-1575043694:25677..26206TCONS_00019427-exon-sc0000326-1575043694:25677..26206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:25677..26206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.16795	0	0	1.72335	0.843497	2.5186	1.66781	2.15375	3.02989	3.27506	2.11541	1.96934	1.87493	0.869279	1.33464	0.54367	0.550364	1.15361	1.00207	0.94248	0	0.768256	2.51858	1.30611	3.07324	2.14501	1.7892	1.19353	0.797195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top