TCONS_00019425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019425
Unique NameTCONS_00019425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019425 ID=TCONS_00019425|Name=TCONS_00019425|organism=Clytia hemisphaerica|type=transcript|length=641bp
CTCTTTGTTAGAATTTAAAGATCTTATATGGGTATTGATTTGGTCATCAG
TTTGCAAGCCATGAACTGTTTGAGTAAATGGTGCAAAATTTTGTTCCATT
TCATGactttcatcatcattttcactgtcTGATGAGTTGCTCATTAGGTC
TTGCACTACATCATTTTCTTGTTGAGCAAAAGCATCTTGATTATGCATAA
GGTCATTACGATAGTTTTGAAGTACTAAATCAACAAGATGACCATCAGGN
AAGACAAAATTGTATCAATAGAGCCAATTTCAATATACTCAGGCTTATCA
GGATccaaaatgtttctctttttagGATGCAAATTTGTATCAATAAATTC
TTGAACAGTTTGGATCACATTATTTCTAGCAACCAAAATATcatgttttt
caatttcaggtaATCCTTCAGGAAGCGGTTCAGACAAAATAGTACGCTTG
cagaaaagttttccaaattgaaatcggcattcatttttgcgatatttact
ACACGTTCTAGAATGGGAGTGTATTTGATATTTAGTTATAAATTCCATAA
CTCAGGACTTTCTTCTCTATCAGGAACATTAGCAGAAATAACACTATCTA
TGTGTTCAATATACTTTTCTTTTCCGTCTTCAAGTTTTGGG
Run BLAST on NCBI

protein sequence of TCONS_00019425-protein

>TCONS_00019425-protein ID=TCONS_00019425-protein|Name=TCONS_00019425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MEFITKYQIHSHSRTCSKYRKNECRFQFGKLFCKRTILSEPLPEGLPEIE
KHDILVARNNVIQTVQEFIDTNLHPKKRNILDPDKPEYIEIGSIDTILSX
LMVILLI
Run BLAST on NCBI

transcript from alignment at sc0000326:20184..20824

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019425 ID=TCONS_00019425|Name=TCONS_00019425|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0000326:20184..20824 (Clytia hemisphaerica)
CCCAAAACTTGAAGACGGAAAAGAAAAGTATATTGAACACATAGATAGTG
TTATTTCTGCTAATGTTCCTGATAGAGAAGAAAGTCCTGAGTTATGGAAT
TTATAACTAAATATCAAATACACTCCCATTCTAGAACGTGTagtaaatat
cgcaaaaatgaatgccgatttcaatttggaaaacttttctgCAAGCGTAC
TATTTTGTCTGAACCGCTTCCTGAAGGATtacctgaaattgaaaaacatg
ATATTTTGGTTGCTAGAAATAATGTGATCCAAACTGTTCAAGAATTTATT
GATACAAATTTGCATCctaaaaagagaaacattttggATCCTGATAAGCC
TGAGTATATTGAAATTGGCTCTATTGATACAATTTTGTCTTNCCTGATGG
TCATCTTGTTGATTTAGTACTTCAAAACTATCGTAATGACCTTATGCATA
ATCAAGATGCTTTTGCTCAACAAGAAAATGATGTAGTGCAAGACCTAATG
AGCAACTCATCAgacagtgaaaatgatgatgaaagtCATGAAATGGAACA
AAATTTTGCACCATTTACTCAAACAGTTCATGGCTTGCAAACTGATGACC
AAATCAATACCCATATAAGATCTTTAAATTCTAACAAAGAG

Coding sequence (CDS) from alignment at sc0000326:20184..20824

>TCONS_00019425 ID=TCONS_00019425|Name=TCONS_00019425|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000326:20184..20824 (Clytia hemisphaerica)
ATGGAATTTATAACTAAATATCAAATACACTCCCATTCTAGAACGTGTag
taaatatcgcaaaaatgaatgccgatttcaatttggaaaacttttctgCA
AGCGTACTATTTTGTCTGAACCGCTTCCTGAAGGATtacctgaaattgaa
aaacatgATATTTTGGTTGCTAGAAATAATGTGATCCAAACTGTTCAAGA
ATTTATTGATACAAATTTGCATCctaaaaagagaaacattttggATCCTG
ATAAGCCTGAGTATATTGAAATTGGCTCTATTGATACAATTTTGTCTTNC
CTGATGGTCATCTTGTTGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010912XLOC_010912Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019425-proteinTCONS_00019425-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019425-exon-sc0000326-1491911889:20184..20824TCONS_00019425-exon-sc0000326-1491911889:20184..20824Clytia hemisphaericaexon
TCONS_00019425-exon-sc0000326-1510915933:20184..20824TCONS_00019425-exon-sc0000326-1510915933:20184..20824Clytia hemisphaericaexon
TCONS_00019425-exon-sc0000326-1575043694:20184..20824TCONS_00019425-exon-sc0000326-1575043694:20184..20824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:20184..20824 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.758836	1.96809	1.19584	3.24121	0.616116	0.945199	0.842	1.37933	1.08443	0.207351	0	1.2605	0.356165	0.29505	0.680602	1.1617	0.364005	0.703735	1.07735	1.17926	1.43044	1.51092	0.211146	1.00869	0.492166	0.569715	1.76835	1.99764	0.680075	1.91362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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