TCONS_00019424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019424
Unique NameTCONS_00019424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019424 ID=TCONS_00019424|Name=TCONS_00019424|organism=Clytia hemisphaerica|type=transcript|length=509bp
NAAATTTGAAGCTTGTTAGTAACAGACTGGCATGGGATTTCTCCCTTCAT
TAATTTTCTATGACAGGTTGTGCATACGTAGAAATTACCATCAAACGAGG
TTAGAGGATTAATATTTTCTAAGTTGATTTTTGAGTACTTTTGTTCATCA
AAACCTATCACAGATTTTTTGAACATGCTGCGGTTACACATTACACAGAT
GTAAGAAGGACCCTCTTGTTTTTTCTGTTTGAAGTTTTCAACCCTTTTTC
CGGAACTAAGTTTTTTGTTGTTAATGTAAAAGAATTTTGCAGCCTTACgc
tgattttctttttgctgttcatgtttttctgatcctttattcaATTCACG
TAANTCAGATTTAGTGGCCCGTAGTGCATAAATCCGAAGggcaaaaaaaa
agcaaaaaagaaaaaaaatgccaCAATCAAATTCAGTGCAGTTAATGAAT
GAATATGAAGGGGCAAAACAGGCTTTGAGCAGTTCTGAGGAGCAGAGCTG
CTAGGCAAA
Run BLAST on NCBI

transcript from alignment at sc0000326:17320..17828

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019424 ID=TCONS_00019424|Name=TCONS_00019424|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0000326:17320..17828 (Clytia hemisphaerica)
TTTGCCTAGCAGCTCTGCTCCTCAGAACTGCTCAAAGCCTGTTTTGCCCC
TTCATATTCATTCATTAACTGCACTGAATTTGATTGtggcattttttttc
ttttttgctttttttttgccCTTCGGATTTATGCACTACGGGCCACTAAA
TCTGANTTACGTGAATtgaataaaggatcagaaaaacatgaacagcaaaa
agaaaatcagcGTAAGGCTGCAAAATTCTTTTACATTAACAACAAAAAAC
TTAGTTCCGGAAAAAGGGTTGAAAACTTCAAACAGAAAAAACAAGAGGGT
CCTTCTTACATCTGTGTAATGTGTAACCGCAGCATGTTCAAAAAATCTGT
GATAGGTTTTGATGAACAAAAGTACTCAAAAATCAACTTAGAAAATATTA
ATCCTCTAACCTCGTTTGATGGTAATTTCTACGTATGCACAACCTGTCAT
AGAAAATTAATGAAGGGAGAAATCCCATGCCAGTCTGTTACTAACAAGCT
TCAAATTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010911XLOC_010911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019424-exon-sc0000326-1491911889:17320..17828TCONS_00019424-exon-sc0000326-1491911889:17320..17828Clytia hemisphaericaexon
TCONS_00019424-exon-sc0000326-1510915933:17320..17828TCONS_00019424-exon-sc0000326-1510915933:17320..17828Clytia hemisphaericaexon
TCONS_00019424-exon-sc0000326-1575043694:17320..17828TCONS_00019424-exon-sc0000326-1575043694:17320..17828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:17320..17828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50434	2.03427	4.58507	6.12807	0.851415	1.36965	0.608163	1.37873	0.317027	0.246877	0	0.23628	0.157301	0.940252	0.526067	0.677281	0.0887767	0.193451	0.147847	0	0.595612	0.39157	0.406781	0.757989	0.253939	0.828968	1.27375	0.820385	0.656292	0.500919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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