TCONS_00019422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019422
Unique NameTCONS_00019422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019422 ID=TCONS_00019422|Name=TCONS_00019422|organism=Clytia hemisphaerica|type=transcript|length=382bp
taaaaaatagcctaaactcgcctaaactttcaccaaagtacCCAAATCTT
ATAATGGCTATAGCAAGATGTCGAACAAGGAACGGACTACATCATACTAC
AGCTGCTAAAAGCAAAATCTAAACATCATCACGAGAAAgagaattttctc
ttttttaatgatttgattgTATAAAGGTGTGATGAAACTCATTATAAAGT
AattgttcgattgttgtttTCTTGTTATTGCAATCATGTCAAaggaattt
cataaaatatcttTAGCAACAAACTTTCCGTGCAAAATCCATCTGTCTGA
CGATGGTTTTTCATTGTTAAgtacttttattaaaaagtatttctgattgg
ttgaaaaaacatGAGGAACGACCTCTTATTGG
Run BLAST on NCBI

transcript from alignment at sc0000326:850..1231

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019422 ID=TCONS_00019422|Name=TCONS_00019422|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0000326:850..1231 (Clytia hemisphaerica)
CCAATAAGAGGTCGTTCCTCatgttttttcaaccaatcagaaatactttt
taataaaagtacTTAACAATGAAAAACCATCGTCAGACAGATGGATTTTG
CACGGAAAGTTTGTTGCTAaagatattttatgaaattcctTTGACATGAT
TGCAATAACAAGAaaacaacaatcgaacaatTACTTTATAATGAGTTTCA
TCACACCTTTATAcaatcaaatcattaaaaaagagaaaattctcTTTCTC
GTGATGATGTTTAGATTTTGCTTTTAGCAGCTGTAGTATGATGTAGTCCG
TTCCTTGTTCGACATCTTGCTATAGCCATTATAAGATTTGGgtactttgg
tgaaagtttaggcgagtttaggctatttttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010909XLOC_010909Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019422-exon-sc0000326-1491911889:850..1231TCONS_00019422-exon-sc0000326-1491911889:850..1231Clytia hemisphaericaexon
TCONS_00019422-exon-sc0000326-1510915933:850..1231TCONS_00019422-exon-sc0000326-1510915933:850..1231Clytia hemisphaericaexon
TCONS_00019422-exon-sc0000326-1575043694:850..1231TCONS_00019422-exon-sc0000326-1575043694:850..1231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:850..1231 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43552	1.79981	1.85756	2.726	2.48898	0.437072	6.06405	2.4683	1.90093	1.28433	0	1.2292	0.818328	0.424921	0.232895	0.499864	0.307896	0.315584	0.217998	0.456238	1.78449	1.74082	0	0.427541	0.440357	0.98252	1.68718	0.900302	0.227616	0.927618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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