TCONS_00019419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019419
Unique NameTCONS_00019419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019419 ID=TCONS_00019419|Name=TCONS_00019419|organism=Clytia hemisphaerica|type=transcript|length=1250bp
CTTGGTGAAAAGTATTCAAACTTCAAATGTTTCGGTGAAGATGGCAAACA
GAACATGATGGTTAAGTCGATGCTCTCCTGGGCAAGCAGTGAACTTCATC
AAGTACTTGGTTATCGAGTGGTATATCCAAACTTCATGGAATCCTACCAG
CTGACTGGTGACAGCACAGAAGGGTTGATTGAAAAGGGTACAAAGGAGTT
AACAAAAATGCTGGAAATGAtggaaaatgtatttttaaGACGAAACAAAT
TCCTAACAGGCTCCTCGATCACAGTCGCTGATTATTATGTTGCTACGTTG
ATCTTACAACTTGAATGGTTGGAGTTCGATTTCAGTTTATGGCCGAAATT
AACAAACTGGCTGAACACTTTCAAGGATTTAGAACTATGGAAAAAAGTTC
ATGAGAAGCATAATGGATTTGTTGCTGAATTGAAGAAATAAACTTAAAGA
GACCTTTCAAGATGAAAAGTTGGTTTACACCTCGATGTTACAATCTTTCA
ACATATCTAACTCAATATGATAGATATACCATCGTTCAAGataacatccc
cttctcacagacccgttaGGATTTTTTTAGCCGGTAGGAGTAGGGATAAT
GGACTGAaattcgatggggattgatatccCCATTCATTTTATGTCTGGGG
ATTTTTTTGTTGCCAAGACGGAAAATTCAGTGGGTTGGGAAAAATAGCAT
TGTATTTTGCAATGAGGATTGGTTtgtctgattattttcagtggggacga
aAATTTGAGTattattttccaccggggacgacattctggccaattttttc
cagtgggaagggttctcagtgagtctgtgagaaggggatgtaagATTATC
TTCCAGGCTGTGGTTTGACCAACAGCCTGGAACAGCCTCAGCAAAATACA
TTCAACTTCAACCTTTGGAAGATTGGTATAAGAGGAATACCCAATATCAA
TGGCTGTTTAAAAATTGAGTTGTTTTGAACTTAGATAACCTTTCCACAAC
TACCAAAGGACTTCAAGAAATAGATTTCAAGGAGAGAGCATACGAAGTGC
TCAACTATGTAAAAATAAAGCCTAATCTgtgagaaataattttttaaact
gcatttttatttacaaagatttttcagtttttagttATTATTATAATATC
TGTACATTTGCTGTAGTAAATCATGTATAAGCCGTATTTTACTTCTACAA
TGTTTACTGTTATGAATGtcattgcaaaaaaaatattgaccgCAGCCAGA
Run BLAST on NCBI

transcript from alignment at sc0000326:296596..300278-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019419 ID=TCONS_00019419|Name=TCONS_00019419|organism=Clytia hemisphaerica|type=transcript|length=3683bp|location=Sequence derived from alignment at sc0000326:296596..300278- (Clytia hemisphaerica)
CTTGGTGAAAAGTATTCAAACTTCAAATGTTTCGGTGAAGATGGCAAACA
GAACATGATGGTATGATATATTCGAATCAATTTTTGATAGTAACGCAACC
ATAAAATCAATATCAAAATGATTTTTATAATTTTAGGTAAATATTCCCAA
GAACACTTTAAAGGCTTTAAAGATTCCTTTTACTTTGAAGTTGATAAAAA
TAAGATAAATTTTCCATTGTGTTTGTAAAGCATTGTGATATAAGGGAAAA
TAGAATAAAACTTCTATACAAAGCTCTCTATTTACATCTAATTTATGCTA
AAGTTACCAAAAATATTTCCATTTCTCAATTTGCTAAGGTTAAGTCGATG
CTCTCCTGGGCAAGCAGTGAACTTCATCAAGTACTTGGTTATCGAGTGGT
ATATCCAAACTTCATGGAATCCTACCAGCTGACTGGTGACAGCACAGAAG
GGTTGATTGAAAAGGGTACAAAGGAGTTAACAAAAATGCTGGAAATGATG
GAAAATGTATTTTTAAGACGAAACAAATTCCTAACAGGTGAGATTTCGTT
CTTTAAAGTGATATTTAATTTAATTTATATTTTAGGTAAAAACTATACAA
TATCTATTTCGTAAAATATTGAACAGAAATACTTTAAAAGTCAGCTATAG
TTTTACCTAAAATATATCATATAAATATAACAAGAAAATCTTGGGGGAAT
AACAAGCCGCTGTTACAAAATAATGTAATCGTCGTGTTAAAGCTAATTGC
CCACTTAGAGGGGAATGTCTTGATAAATGTATTTTTCAGACGAAACAAAT
TTCTAACAGGTGAGATTTGGTGATTTACTCAAAAGGTCCGAATAGTAGGG
GTCCGAATAAAAGGTTTTATTATCCGACGCGCGTAAATAGCGACATTTGA
TTGGCTTCTTTGCTGTCCAATATTTTCGAATATATAGCTTCCATGGAGGC
TATATGTTTCAAAAATTGACGTCACACGACGAGTTCAATATGACAATTGA
GCATCTTCTTTTTGACGTTACGTCACAAAATAAGAATAAGACTTTTGAAT
AAAAAACTACCAAGAAACCAGATTTAAGAGTTTATAAATTGGAATAAATT
TTGAAAACGAGAAATATTTTAGCGATGAACGGAAAATAAACCATTTATTT
GGACGCAGTCTCCCCGGGGGGGGTACTACCCTTGTCGACCGACGGGGGTG
CTCCGCTGAGTTTCGAAAAATGGACCCTACGTGGGACTCGAAATTTGCGA
AAAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGGACTAGTGGAGGTTAAAA
AAGGTACCCTGACCAGCGGAGCATCCCCGTAACCCATTTTGCCCTAGTAC
CCCCCCCCGGGGCAGTCTCATCCAATATGAAAAATATTGGATTCGACTTT
GTCCAATAACTGCTTAATACTTAATTTTCTTAATGCTGGAATAGATATTT
TCATCATTAAATTCATTACCCAGGTAAAGTTGATTAATGTCGTATTTAAG
GAAATGGGCCGTAAAATGTTTTTAGACTGTAATTCGCAGGTTAAATGTTT
AAGTCTATTTTTCGCTCCATCTATATTATAATACGTTTAAATCGGAACTC
TCCCATTCTCGTATGAAACTTTTTTTCTAGCGATTTTCAAGTAGACGGTA
ATTTGTTTTAACGCTCTTTCTGATTGATCTTTCAATTTGCCTTAAATCTG
TGCAACATTAAATTCTTTCTTTCTTTTTCCAATCTTCTTTTTTGAAATTG
AACACTCCTCCGTCGTCTTTTTCTTTTTCATTTTGAAATAACTAATTTTC
AAAGCTATTCAAAGTCTTTAAAGTCACCCTTGAATGTCTGCCCACGATGA
CTTGCCACGATGGCTGAACATCTCCAAGCATAATAACAGTTTTATAAGAT
ACTCTTGATTCTTGTTGATTTTAGCCAATACAGAGTCTTCTTTACTTGCA
GTAGTTTCGATTCGATTTACTTTCAAAATAACTCTATAATTTCACACCCC
TGTGTCACAGACCCGCTAGGACCCTAGCCCCATTTTAGAATTTGGTTAAA
AAGCCCCACTAGTAAATTGACTCTGATTTTATCCCTACTCGAAATTAGAT
GTTTAAAAATTGCATTCCAAAACCATCCCACTGGACTTCATAACCCTGGA
ACATTAGAATTTCTATTGGGATTTCAATATGAATTTTTATCCCCACTGTG
GGAATAAGTTCCTTACCTTTTTGTCTAGAATGAAACTTATGCTGATAGTA
GCAAAAATTGCAAAGAAAAATTCCTTTGAAAATACACAGGAAAAAATGTT
TTAAATAGTGTTCCATTTGATGTACAAGAAAATATTATTGTTCAATTTCC
TTGGAAAATACAAGAAATCGTTTACCTATTTCTCTGATAGGGGCTCGAGT
CAAAGATATTATATTATATTGCTGGTTTATTTATTGTTTTAGGCTCCTCG
ATCACAGTCGCTGATTATTATGTTGCTACGTTGATCTTACAACTTGAATG
GTTGGAGTTCGATTTCAGTTTATGGCCGAAATTAACAAACTGGCTGAACA
CTTTCAAGGATTTAGAACTATGGAAAAAAGTTCATGAGAAGCATAATGGA
TTTGTTGCTGAATTGAAGAAATAAACTTAAAGAGACCTTTCAAGATGAAA
AGTTGGTTTACACCTCGATGTTACAATCTTTCAACATATCTAACTCAATA
TGATAGATATACCATCGTTCAAGATAACATCCCCTTCTCACAGACCCGTT
AGGATTTTTTTAGCCGGTAGGAGTAGGGATAATGGACTGAAATTCGATGG
GGATTGATATCCCCATTCATTTTATGTCTGGGGATTTTTTTGTTGCCAAG
ACGGAAAATTCAGTGGGTTGGGAAAAATAGCATTGTATTTTGCAATGAGG
ATTGGTTTGTCTGATTATTTTCAGTGGGGACGAAAATTTGAGTATTATTT
TCCACCGGGGACGACATTCTGGCCAATTTTTTCCAGTGGGAAGGGTTCTC
AGTGAGTCTGTGAGAAGGGGATGTAAGATTATCTTCCAGGCTGTGGTTTG
ACCAACAGCCTGGAACAGCCTCAGCAAAATACATTCAACTTCAACCTTTG
GAAGATTGGTATAAGAGGAATACCCAATATCAATGGCTGTTTAAAAATTG
AGTTGTTTTGAACTTAGATAACCTTTCCACAACTACCAAAGGACTTCAAG
AAATAGATTTCAAGGAGAGAGCATACGAAGTGCTCAACTATGTAAAAATA
AAGCCTAATCTGTGAGAAATAATTTTTTAAACTGCATTTTTATTTACAAA
GATTTTTCAGTTTTTAGTTATTATTATAATATCTGTACATTTGCTGTAGT
AAATCATGTATAAGCCGTATTTTACTTCTACAATGTTTACTGTTATGAAT
GTCATTGCAAAAAAAATATTGACCGCAGCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010907XLOC_010907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019419-exon-sc0000326-1575043694:300219..300278TCONS_00019419-exon-sc0000326-1575043694:300219..300278Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1575043694:299742..299940TCONS_00019419-exon-sc0000326-1575043694:299742..299940Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1575043694:296596..297586TCONS_00019419-exon-sc0000326-1575043694:296596..297586Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1510915933:300219..300278TCONS_00019419-exon-sc0000326-1510915933:300219..300278Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1510915933:299742..299940TCONS_00019419-exon-sc0000326-1510915933:299742..299940Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1510915933:296596..297586TCONS_00019419-exon-sc0000326-1510915933:296596..297586Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1491911889:300219..300278TCONS_00019419-exon-sc0000326-1491911889:300219..300278Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1491911889:299742..299940TCONS_00019419-exon-sc0000326-1491911889:299742..299940Clytia hemisphaericaexon
TCONS_00019419-exon-sc0000326-1491911889:296596..297586TCONS_00019419-exon-sc0000326-1491911889:296596..297586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:296596..300278 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.473911	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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