TCONS_00019413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019413
Unique NameTCONS_00019413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019413 ID=TCONS_00019413|Name=TCONS_00019413|organism=Clytia hemisphaerica|type=transcript|length=1668bp
CGTTAAAAGGGGAGGCTTCCAAATGCTGCATCGAATCTCAAGATATCACG
TGTCAAAAACCAAAAACATGCTCTGTAATAAAATCGACTTGTGCTCATTG
CAAATCTGGTTATTATTCAATGGCAACTGGTGAAAAAGCATTTTGTGACA
TGGGAAGTGACGATCAGTTTATACCAAGTTGTAAAACAATCAAAGACGCT
TACCCAGAATCCTCTTCGGGTTTTTATCACCTTGGTTACAAAGATAACAT
CTTGGAATTTTATTGTGATATGACTGCTGATGCagGTGGATGGACAATGG
TAGCCAACATTACAATAACATCAAACGCTGAAGCCGAAAGATATCTTCTA
AGAAATATCAAGCAAAATGGTTTAGGAAGCCTGAAAAATGTGCGATCGGG
AGTATACACTTTATCGCTCGGAACGCTATCTACATTTCAAGAAAGGAATG
AGTTTACGGAAATCCGTATCAAATGCCAAAAGACGTATTTAGGATTTCAA
GTTGACGTTGTTTTGGGTTATGGCTCCGAACTTGTCGGTGGTGTAACACC
GGAACGGCATGTAAATTTATACCGATTCCTCCCGAGTGATTCCCGACACA
CTCAAGTATCGGGCAGTTAtaaaaaagcagattttgcTAATTTATACAAT
CATGCTATTTTCGTTCCTGGTCAATATCATATAGTCATTAATAACGATCC
AAATCGTCGCAGATGGGAGTGTGGTGATTACGACCAGATTCAACCCAACG
GTAAAACCTACTCACCGATCGGATCATGGCAATTTTTTGTTCGATAAAGT
GGAAACTGTTTCACATCGAATTGTGTAAATATAATCAAATTTAATCTAAC
GGTAAAACGTACTCCAGGATCGGAtcaaggcaattttttgttaGATCAAA
CATTGAAAAAGTTGCATAAACTTTTTACGATGAAATATgtaaatataatt
attttttccgCACACATTCAACGTACTCCACGTATAACCAGATTCAATCT
AACAGTAAAACGTACTCCTGGATCGGATCATGGCAATTATTTGTTAGATC
AAACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAATATgtaaatata
attattttttccgCACACAGTAAAACGTACTCCACGTACAATCGGATTTA
ATCTAACGGTGAAATGTACTCTCTGGATCGGATCATGGCAATTATTTGTT
AGATCAAACAttaaagaagtattttttcCGCACACAGTTTGATGTACTCC
ACGTACAATCGGATTTAATCTAACGGTGAAATGTACTCTCAGGATCGGAT
CATGGCAATTATTTGTTAGATCAAACAttaaagaagtattttttcCGCAC
ACAGTATGATGTACTCCACGTACAATCGGATTTAATCTAACGGTAAAACG
TACTCCAGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGA
AGTTGCAGAAACTTTTTACGATGAAATATgtaaatataattattttttcc
aCACGCAGTAAAACGTACTCTTgaatgcaattaacgtgcaaaagagatta
acgcaaaggttgattcgaactcgtacaaacacattgATGGTAATGATtgt
gtgaaaaataaaatatatttttagattcagcatGGTTCGCTATTTCGAGC
TGTGGAGTAAGGTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000326:153762..159290-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019413 ID=TCONS_00019413|Name=TCONS_00019413|organism=Clytia hemisphaerica|type=transcript|length=5529bp|location=Sequence derived from alignment at sc0000326:153762..159290- (Clytia hemisphaerica)
CGTTAAAAGGGGAGGCTTCCAAATGCTGCATCGAATCTCAAGATATCACG
TGTCAAAAACGTAAGTATCCCAGCTGACACACAACGTTGTTCCAACGTTT
TTCTAACGCTCACAACGTCCATATAACGTTAAATGAATGTTGAAACAACG
TTGTGTGTCAAAAACGTAAGCATAAGAGATTTTGATCGAATGTGATTAAA
TTTCGAACCATTACCTCCTAGATGAGTGTTTGGTTAAAAGTTTTATTTTT
ACATAAGTGTTCCCGTCGTTTCATATCAGACACATATTTCATATCAGAAC
ATTGTCTGGCTATTTTTATGTTATGTTGATATAAGAAAAAAAATGTTTTT
CTTTCCTCTTTCCTCTTTCTGAAATTCTTAAATTAAAATTTATGAGTAAG
CAAACGATAAGTAGTCTAGTTCAAACCTAGTAACCGTTTTTTAATAATTT
TTCTCATAGCAAAAACATGCTCTGTAATAAAATCGACTTGTGCTCATTGC
AAATCTGGTTATTATTCAATGGCAACTGGTGAAAAAGCATTTTGTGACAT
GGGAAGTAAGAAACTCATCTTTCTTGATGATAAAGTTATATAAAGTAAAA
TGAAATTTCATTCTCAAAAACCTATTCAGTCATCTTGGGAATTAAATATG
TACTCTTAGGTTCCAAATAAACGGGCCCCCCCCCCGCTTGTTAATTTTTC
GAAAATTTTCCAACCCCCCCGGACCTTATTAGGACCCCCCGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCTGTTTATTTGGAACCTAAG
AGTATTGACTCAATAGAGAATTTCAATCTTCTTCCAGTTATAACCAATGT
TCTATAATGATGAGTTTTGAGGGTTTTCTTCATATAAAGATTCTACCACC
TTATTTCATTCGGGAAGATTCACCGCGCCACTATTCCGCCATTATAGTAT
TTTTTCTTACGGGGGCGGACCTCTATTATTTGAACATTTCCGTAAATCGA
ACTAAAACATTATTCCCCTCAGCTGAAAATTGGTATCTATTACTCTCTGT
AATTCGAATCTTTTTCTATCTATTTTTCTATAGTATTTCTGTAATTCGAA
CTAAAACANATCGAACTGAAACATTTTCCCCCTCAGCTGAAAATTGGTAT
CTATTACTCTCTGAAATTCGAATCTTTTTCTATCTATTTTTCTATAGTAT
TTCTGTAAATCGAACTGAAACATTTCCCCCCTCAGCTGAAAATTGGTATC
TATTACTCTCTGAAATTCGAATCTTTTTCTATCTATTTTTCTATAGTATT
TCTGTAATTCGAACTAAAACATTTTTCCCCTCAGCTATGAAAAGTGGTAT
GAATTACCTTCTGTAATTCGAATCTTTCTCTATCTCGAAGAAAACTTGAA
TCAGAAATAGTCAACTATAAAAACAAATAAAATTTTTCATTGTCAAAAAG
GTGACGATCAGTTTATACCAAGTTGTAAAACAATCAAAGACGCTTACCCA
GAATCCTCTTCGGGTTTTTATCACCTTGGTTACAAAGATAACATCTTGGA
ATTTTATTGTGATATGACTGCTGATGCAGGTGAGTTTTTTTTTTTTAACT
TTTTCAAACCAAAATCAAAATTCTATACAGGGTGTACCGAAAAAAAGTAT
CGAATTCGAACATGATTCCGAGAAGAAGGTTGTGTGTGTTGCGTATGTGT
AACAAAATGTCAGAAAATGTATACCAACACAATAATATTTTTGCAACAGT
CATTATAATTGAAAATAATTAACTTTCTTTACAATTTTCATGACGTTAAA
GTTAGTGAGAATTGTTTTTTCGCAAAAGTTATTCATATATATGTCTCATG
ACAATTAATGGCACAGAGAGAAACTTTGATAAACATTCCAAGTTTAATGG
AACACACACAAGAACTTTGTTTACTTCTATTTACCCAGAGAAAATCTGAG
ATTTTGAGAATTTTACGTGGATTTAATNCCCCCCTCAGCTGAAAAGTGGT
ATCTATTACTCTCTGAAATTCGAATCTTTTTCTATCTATTTTTCTATAGT
ATTTCTGTAATTCGAACTAAAACATTTCCCCCCTCAGCTGAAAATTGGTA
TCTATTACTCTCTGTAATTCGAATCTTTTTCTATCTATTTTTCTATAGTA
TTTCTGTAATTCGAACTAAAACATTTTTCCCCTCAGCTATGAAAAGTGGT
ATGAATTACCTTCTGTAATTCGAATCTTTCTCTATCTCGAAGAAAACTTG
AATCAGAAATAGTCAACTATAAAAACAAATAAAATTTTTCATTGTCAAAA
AGGTGACGATCAGTTTATACCAAGTTGTAAAACAATCAAAGACGCTTACC
CAGAATCCTCTTCGGGTTTTTATCACCTTGGTTACAAAGATAACATCTTG
GAATTTTATTGTGATATGACTGCTGATGCAGGTGAGTTTTTTTTTTTTTG
ACTTTTTCAAACCAAAATTAAAATTCTATACAGGGTGTCCCTAATTAAAG
TATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGC
TAAAATATAAGAACGTTCTCCATCACACAGGCTTATTACAACAGGTAGTT
ACAACGTATAAATTAATTGTAATGACAAAGAAAAAAGAGAGAGAGCTTAA
AATACAATTTTGTGAACACGCACATAAAACTTTCTACTTATAGTTGTGTT
TCGACTCGATACTTTAATTAGGGACACCCTGTACAGGGTGTACCGAAAAA
AAGTATCGAATTCGAACATGATTCCGAGTAGAAGGTTGTGTGAGTTGCGT
ATGTTTAATAAAATGTAAGAAAATGTATACCAACACAATAATATTTTTGC
AACAGCCATTATAATTAAAAATAATTAACTTTCTTTACAATTTTCATGAC
GTTAAAGTTATTGAGAGTTGTTTTTCCGCAAAAGTTATTCATAAATAATG
TCTCATGACAATAGACCTAATCGGAGTTTTTGATTTTTTTTAAAAAGTGA
TGCATTATGGGATTGTTTCGAGTGTATTACAATAGAATTCCCTCGAGGAA
TTCCTAAGAGATTTCTATTGTAATACACTCGAAACAATCCCACGATACAC
CGTTTTTTTAGAAAAATAAAAAACTCCGATAAGATCTAATTAATGGCAGA
GAGAGAAACTTTGATAAACATTTCAAGTTTAATGGAACAGACACAAGAAC
TTTGTTTACTTCTATTTACCCAGAGAAAATTTGACAATTTGAGAATTTTA
CGTGGATTTAATTTCGTAAGTCAATGATCTAACTCAATTGTAATGGCGCA
AATTTACGAAAAACGCGAATATCGACATAAAGAAGGTAAAATTGTTTTAG
GCGAATGAAAGAGAATAAATACGGTCTGCATTTTTTTAAGGTGGATGGAC
AATGGTAGCCAACATTACAATAACATCAAACGCTGAAGCCGAAAGATATC
TTCTAAGAAATATCAAGCAAAATGGTTTAGGAAGCCTGAAAAATGTGCGA
TCGGGAGTATACACTTTATCGCTCGGAACGCTATCTACATTTCAAGAAAG
GAATGAGTTTACGGAAATCCGTATCAAATGCCAAAAGACGTATTTAGGAT
TTCAAGTTGACGTTGTTTTGGGTTATGGCTCCGAACTTGTCGGTGGTGTA
ACACCGGAACGGCATGTAAATTTATACCGATTCCTCCCGAGTGATTCCCG
ACACACTCAAGTATCGGGCAGTTATAAAAAAGCAGATTTTGCTAATTTAT
ACAATCATGCTATTTTCGTTCCTGGTCAATATCATATAGTCATTAATAAC
GATCCAAATCGTCGCAGATGGGAGTGTGGTGATTACGACCAGATTCAACC
CAACGGTAAAACCTACTCACCGATCGGATCATGGCAATTTTTTGTTCGAT
AAAGTGGAAACTGTTTCACATCGAATTGTGTAAATATAATCAAATTTAAT
CTAACGGTAAAACGTACTCCAGGATCGGATCAAGGCAATTTTTTGTTAGA
TCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGAAATATGTAAATA
TAATTATTTTTTCCGCACACATTCAACGTACTCCACGTATAACCAGATTC
AATCTAACAGTAAAACGTACTCCTGGATCGGATCATGGCAATTATTTGTT
AGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAATATGTAA
ATATAATTATTTTTTCCGCACACAGTAAAACGTACTCCACGTACAATCAG
ATTCAATCTAGCGGTAAAACGTACTCCAGGATCGGATCATGGCAATTATT
TGTTAGATCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGAAATAT
GTAAATATAATTATTTTTTCCGCACACATTCAACGTACTCCACGTATAAC
CAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGGATCATGGCAATT
ATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAA
TATGTAAATATAATTATTTTTTCCGCACACATTCAAGGTACTCCACGTAC
AATCGGATTTAATCTAACGGTGAAATGTACTCTCTGGATCGGATCATGGC
AATTATTTGTTAGATCAAACATTAAAGAAGTATTTTTTCCGCACACAGTT
TGATGTACTCCACGTACAATCGGATTTAATCTAACGGTGAAATGTACTCT
CAGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTAT
TTTTTCCGCACACAGTATGATGTACTCCACGTACAATCGGATTTAATCTA
ACGGTAAAACGTACTCCAGGATCGGATCATGGCAATTATTTGTTAGATCA
AACATTAAAGAAGTTGCAGAAACTTTTTACGATGAAATATGTAAATATAA
TTATTTTTTCCACACGCAGTAAAACGTACTCTTGAATGCAATTAACGTGC
AAAAGAGATTAACGCAAAGGTTGATTCGAACTCGTACAAACACATTGATG
GTAATGATTGTGTGAAAAATAAAATATATTTTTAGATTCAGCATGGTTCG
CTATTTCGAGCTGTGGAGTAAGGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010903XLOC_010903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019413-exon-sc0000326-1575043694:159231..159290TCONS_00019413-exon-sc0000326-1575043694:159231..159290Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1575043694:158736..158831TCONS_00019413-exon-sc0000326-1575043694:158736..158831Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1575043694:156410..156538TCONS_00019413-exon-sc0000326-1575043694:156410..156538Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1575043694:154610..155450TCONS_00019413-exon-sc0000326-1575043694:154610..155450Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1575043694:153762..154303TCONS_00019413-exon-sc0000326-1575043694:153762..154303Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1510915933:159231..159290TCONS_00019413-exon-sc0000326-1510915933:159231..159290Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1510915933:158736..158831TCONS_00019413-exon-sc0000326-1510915933:158736..158831Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1510915933:156410..156538TCONS_00019413-exon-sc0000326-1510915933:156410..156538Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1510915933:154610..155450TCONS_00019413-exon-sc0000326-1510915933:154610..155450Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1510915933:153762..154303TCONS_00019413-exon-sc0000326-1510915933:153762..154303Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1491911889:159231..159290TCONS_00019413-exon-sc0000326-1491911889:159231..159290Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1491911889:158736..158831TCONS_00019413-exon-sc0000326-1491911889:158736..158831Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1491911889:156410..156538TCONS_00019413-exon-sc0000326-1491911889:156410..156538Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1491911889:154610..155450TCONS_00019413-exon-sc0000326-1491911889:154610..155450Clytia hemisphaericaexon
TCONS_00019413-exon-sc0000326-1491911889:153762..154303TCONS_00019413-exon-sc0000326-1491911889:153762..154303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:153762..159290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.330485	0	0	0.529245	0.377027	0	0.0473395	0	0.0761443	0	0	4.4572	3.682	0.345387	0.309375	0.237306	0.090095	7.6112	9.94698	0.810709	0	0.193302	0.302371	0.262297	0.342488	0.101957	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top