TCONS_00019412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019412
Unique NameTCONS_00019412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019412 ID=TCONS_00019412|Name=TCONS_00019412|organism=Clytia hemisphaerica|type=transcript|length=1728bp
GGCTTCCAAATGCTGCATCGAATCTCAAGATATCACGTGTCAAAAACCAA
AAACATGCTCTGTAATAAAATCGACTTGTGCTCATTGCAAATCTGGTTAT
TATTCAATGGCAACTGGTGAAAAAGCATTTTGTGACATGGGAAGTGACGA
TCAGTTTATACCAAGTTGTAAAACAATCAAAGACGCTTACCCAGAATCCT
CTTCGGGTTTTTATCACCTTGGTTACAAAGATAACATCTTGGAATTTTAT
TGTGATATGACTGCTGATGCagGTGGATGGACAATGGTAGCCAACATTAC
AATAACATCAAACGCTGAAGCCGAAAGATATCTTCTAAGAAATATCAAGC
AAAATGGTTTAGGAAGCCTGAAAAATGTGCGATCGGGAGTATACACTTTA
TCGCTCGGAACGCTATCTACATTTCAAGAAAGGAATGAGTTTACGGAAAT
CCGTATCAAATGCCAAAAGACGTATTTAGGATTTCAAGTTGACGTTGTTT
TGGGTTATGGCTCCGAACTTGTCGGTGGTGTAACACCGGAACGGCATGTA
AATTTATACCGATTCCTCCCGAGTGATTCCCGACACACTCAAGTATCGGG
CAGTTAtaaaaaagcagattttgcTAATTTATACAATCATGCTATTTTCG
TTCCTGGTCAATATCATATAGTCATTAATAACGATCCAAATCGTCGCAGA
TGGGAGTGTGGTGATTACGACCAGATTCAACCCAACGGTAAAACCTACTC
ACCGATCGGATCATGGCAATTTTTTGTTCGATAAAGTGGAAACTGTTTCA
CATCGAATTGTGTAAATATAATCAAATTTAATCTAACGGTAAAACGTACT
CCAGGATCGGAtcaaggcaattttttgttaGATCAAACATTGAAAAAGTT
GCATAAACTTTTTACGATGAAATATgtaaatataattattttttccgCAC
ACATTCAACGTACTCCACGTATAACCAGATTCAATCTAACAGTAAAACGT
ACTCCTGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAA
GTTGCAGAAACCTTTTATGATGAAATATgtaaatataattattttttccg
CACACAGTAAAACGTACTCCACGTACAATCAGATTCAATCTAGCGGTAAA
ACGTACTCCAGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTGA
AAAAGTTGCATAAACTTTTTACGATGAAATATgtaaatataattattttt
tccgCACACATTCAACGTACTCCACGTATAACCAGATTCAATCTAACAGT
AAAACGTACTCCTGGATCGGATCATGGCAATTATTTGTTAGATCAAACAT
TAAAGAAGTTGCAGAAACCTTTTATGATGAAATATgtaaatataattatt
ttttccgCACACAGTATGATGTACTCCACGTACAATCGGATTTAATCTAA
CGGTAAAACGTACTCCAGGATCGGATCATGGCAATTATTTGTTAGATCAA
ACATTAAAGAAGTTGCAGAAACTTTTTACGATGAAATATgtaaatataat
tattttttccaCACGCAGTAAAACGTACTCTTgaatgcaattaacgtgca
aaagagattaacgcaaaggttgattcgaactcgtacaaacacattgATGG
TAATGATtgtgtgaaaaataaaatatatttttagattcagcatGGTTCGC
TATTTCGAGCTGTGGAGTAAGGTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000326:153762..159277-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019412 ID=TCONS_00019412|Name=TCONS_00019412|organism=Clytia hemisphaerica|type=transcript|length=5516bp|location=Sequence derived from alignment at sc0000326:153762..159277- (Clytia hemisphaerica)
GGCTTCCAAATGCTGCATCGAATCTCAAGATATCACGTGTCAAAAACGTA
AGTATCCCAGCTGACACACAACGTTGTTCCAACGTTTTTCTAACGCTCAC
AACGTCCATATAACGTTAAATGAATGTTGAAACAACGTTGTGTGTCAAAA
ACGTAAGCATAAGAGATTTTGATCGAATGTGATTAAATTTCGAACCATTA
CCTCCTAGATGAGTGTTTGGTTAAAAGTTTTATTTTTACATAAGTGTTCC
CGTCGTTTCATATCAGACACATATTTCATATCAGAACATTGTCTGGCTAT
TTTTATGTTATGTTGATATAAGAAAAAAAATGTTTTTCTTTCCTCTTTCC
TCTTTCTGAAATTCTTAAATTAAAATTTATGAGTAAGCAAACGATAAGTA
GTCTAGTTCAAACCTAGTAACCGTTTTTTAATAATTTTTCTCATAGCAAA
AACATGCTCTGTAATAAAATCGACTTGTGCTCATTGCAAATCTGGTTATT
ATTCAATGGCAACTGGTGAAAAAGCATTTTGTGACATGGGAAGTAAGAAA
CTCATCTTTCTTGATGATAAAGTTATATAAAGTAAAATGAAATTTCATTC
TCAAAAACCTATTCAGTCATCTTGGGAATTAAATATGTACTCTTAGGTTC
CAAATAAACGGGCCCCCCCCCCGCTTGTTAATTTTTCGAAAATTTTCCAA
CCCCCCCGGACCTTATTAGGACCCCCCGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCCTGTTTATTTGGAACCTAAGAGTATTGACTCAA
TAGAGAATTTCAATCTTCTTCCAGTTATAACCAATGTTCTATAATGATGA
GTTTTGAGGGTTTTCTTCATATAAAGATTCTACCACCTTATTTCATTCGG
GAAGATTCACCGCGCCACTATTCCGCCATTATAGTATTTTTTCTTACGGG
GGCGGACCTCTATTATTTGAACATTTCCGTAAATCGAACTAAAACATTAT
TCCCCTCAGCTGAAAATTGGTATCTATTACTCTCTGTAATTCGAATCTTT
TTCTATCTATTTTTCTATAGTATTTCTGTAATTCGAACTAAAACANATCG
AACTGAAACATTTTCCCCCTCAGCTGAAAATTGGTATCTATTACTCTCTG
AAATTCGAATCTTTTTCTATCTATTTTTCTATAGTATTTCTGTAAATCGA
ACTGAAACATTTCCCCCCTCAGCTGAAAATTGGTATCTATTACTCTCTGA
AATTCGAATCTTTTTCTATCTATTTTTCTATAGTATTTCTGTAATTCGAA
CTAAAACATTTTTCCCCTCAGCTATGAAAAGTGGTATGAATTACCTTCTG
TAATTCGAATCTTTCTCTATCTCGAAGAAAACTTGAATCAGAAATAGTCA
ACTATAAAAACAAATAAAATTTTTCATTGTCAAAAAGGTGACGATCAGTT
TATACCAAGTTGTAAAACAATCAAAGACGCTTACCCAGAATCCTCTTCGG
GTTTTTATCACCTTGGTTACAAAGATAACATCTTGGAATTTTATTGTGAT
ATGACTGCTGATGCAGGTGAGTTTTTTTTTTTTAACTTTTTCAAACCAAA
ATCAAAATTCTATACAGGGTGTACCGAAAAAAAGTATCGAATTCGAACAT
GATTCCGAGAAGAAGGTTGTGTGTGTTGCGTATGTGTAACAAAATGTCAG
AAAATGTATACCAACACAATAATATTTTTGCAACAGTCATTATAATTGAA
AATAATTAACTTTCTTTACAATTTTCATGACGTTAAAGTTAGTGAGAATT
GTTTTTTCGCAAAAGTTATTCATATATATGTCTCATGACAATTAATGGCA
CAGAGAGAAACTTTGATAAACATTCCAAGTTTAATGGAACACACACAAGA
ACTTTGTTTACTTCTATTTACCCAGAGAAAATCTGAGATTTTGAGAATTT
TACGTGGATTTAATNCCCCCCTCAGCTGAAAAGTGGTATCTATTACTCTC
TGAAATTCGAATCTTTTTCTATCTATTTTTCTATAGTATTTCTGTAATTC
GAACTAAAACATTTCCCCCCTCAGCTGAAAATTGGTATCTATTACTCTCT
GTAATTCGAATCTTTTTCTATCTATTTTTCTATAGTATTTCTGTAATTCG
AACTAAAACATTTTTCCCCTCAGCTATGAAAAGTGGTATGAATTACCTTC
TGTAATTCGAATCTTTCTCTATCTCGAAGAAAACTTGAATCAGAAATAGT
CAACTATAAAAACAAATAAAATTTTTCATTGTCAAAAAGGTGACGATCAG
TTTATACCAAGTTGTAAAACAATCAAAGACGCTTACCCAGAATCCTCTTC
GGGTTTTTATCACCTTGGTTACAAAGATAACATCTTGGAATTTTATTGTG
ATATGACTGCTGATGCAGGTGAGTTTTTTTTTTTTTGACTTTTTCAAACC
AAAATTAAAATTCTATACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAA
CATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAAATATAAGAA
CGTTCTCCATCACACAGGCTTATTACAACAGGTAGTTACAACGTATAAAT
TAATTGTAATGACAAAGAAAAAAGAGAGAGAGCTTAAAATACAATTTTGT
GAACACGCACATAAAACTTTCTACTTATAGTTGTGTTTCGACTCGATACT
TTAATTAGGGACACCCTGTACAGGGTGTACCGAAAAAAAGTATCGAATTC
GAACATGATTCCGAGTAGAAGGTTGTGTGAGTTGCGTATGTTTAATAAAA
TGTAAGAAAATGTATACCAACACAATAATATTTTTGCAACAGCCATTATA
ATTAAAAATAATTAACTTTCTTTACAATTTTCATGACGTTAAAGTTATTG
AGAGTTGTTTTTCCGCAAAAGTTATTCATAAATAATGTCTCATGACAATA
GACCTAATCGGAGTTTTTGATTTTTTTTAAAAAGTGATGCATTATGGGAT
TGTTTCGAGTGTATTACAATAGAATTCCCTCGAGGAATTCCTAAGAGATT
TCTATTGTAATACACTCGAAACAATCCCACGATACACCGTTTTTTTAGAA
AAATAAAAAACTCCGATAAGATCTAATTAATGGCAGAGAGAGAAACTTTG
ATAAACATTTCAAGTTTAATGGAACAGACACAAGAACTTTGTTTACTTCT
ATTTACCCAGAGAAAATTTGACAATTTGAGAATTTTACGTGGATTTAATT
TCGTAAGTCAATGATCTAACTCAATTGTAATGGCGCAAATTTACGAAAAA
CGCGAATATCGACATAAAGAAGGTAAAATTGTTTTAGGCGAATGAAAGAG
AATAAATACGGTCTGCATTTTTTTAAGGTGGATGGACAATGGTAGCCAAC
ATTACAATAACATCAAACGCTGAAGCCGAAAGATATCTTCTAAGAAATAT
CAAGCAAAATGGTTTAGGAAGCCTGAAAAATGTGCGATCGGGAGTATACA
CTTTATCGCTCGGAACGCTATCTACATTTCAAGAAAGGAATGAGTTTACG
GAAATCCGTATCAAATGCCAAAAGACGTATTTAGGATTTCAAGTTGACGT
TGTTTTGGGTTATGGCTCCGAACTTGTCGGTGGTGTAACACCGGAACGGC
ATGTAAATTTATACCGATTCCTCCCGAGTGATTCCCGACACACTCAAGTA
TCGGGCAGTTATAAAAAAGCAGATTTTGCTAATTTATACAATCATGCTAT
TTTCGTTCCTGGTCAATATCATATAGTCATTAATAACGATCCAAATCGTC
GCAGATGGGAGTGTGGTGATTACGACCAGATTCAACCCAACGGTAAAACC
TACTCACCGATCGGATCATGGCAATTTTTTGTTCGATAAAGTGGAAACTG
TTTCACATCGAATTGTGTAAATATAATCAAATTTAATCTAACGGTAAAAC
GTACTCCAGGATCGGATCAAGGCAATTTTTTGTTAGATCAAACATTGAAA
AAGTTGCATAAACTTTTTACGATGAAATATGTAAATATAATTATTTTTTC
CGCACACATTCAACGTACTCCACGTATAACCAGATTCAATCTAACAGTAA
AACGTACTCCTGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTA
AAGAAGTTGCAGAAACCTTTTATGATGAAATATGTAAATATAATTATTTT
TTCCGCACACAGTAAAACGTACTCCACGTACAATCAGATTCAATCTAGCG
GTAAAACGTACTCCAGGATCGGATCATGGCAATTATTTGTTAGATCAAAC
ATTGAAAAAGTTGCATAAACTTTTTACGATGAAATATGTAAATATAATTA
TTTTTTCCGCACACATTCAACGTACTCCACGTATAACCAGATTCAATCTA
ACAGTAAAACGTACTCCTGGATCGGATCATGGCAATTATTTGTTAGATCA
AACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAATATGTAAATATAA
TTATTTTTTCCGCACACATTCAAGGTACTCCACGTACAATCGGATTTAAT
CTAACGGTGAAATGTACTCTCTGGATCGGATCATGGCAATTATTTGTTAG
ATCAAACATTAAAGAAGTATTTTTTCCGCACACAGTTTGATGTACTCCAC
GTACAATCGGATTTAATCTAACGGTGAAATGTACTCTCAGGATCGGATCA
TGGCAATTATTTGTTAGATCAAACATTAAAGAAGTATTTTTTCCGCACAC
AGTATGATGTACTCCACGTACAATCGGATTTAATCTAACGGTAAAACGTA
CTCCAGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAG
TTGCAGAAACTTTTTACGATGAAATATGTAAATATAATTATTTTTTCCAC
ACGCAGTAAAACGTACTCTTGAATGCAATTAACGTGCAAAAGAGATTAAC
GCAAAGGTTGATTCGAACTCGTACAAACACATTGATGGTAATGATTGTGT
GAAAAATAAAATATATTTTTAGATTCAGCATGGTTCGCTATTTCGAGCTG
TGGAGTAAGGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010903XLOC_010903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019412-exon-sc0000326-1575043694:159231..159277TCONS_00019412-exon-sc0000326-1575043694:159231..159277Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1575043694:158736..158831TCONS_00019412-exon-sc0000326-1575043694:158736..158831Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1575043694:157262..157390TCONS_00019412-exon-sc0000326-1575043694:157262..157390Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1575043694:154311..155450TCONS_00019412-exon-sc0000326-1575043694:154311..155450Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1575043694:153762..154077TCONS_00019412-exon-sc0000326-1575043694:153762..154077Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1510915933:159231..159277TCONS_00019412-exon-sc0000326-1510915933:159231..159277Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1510915933:158736..158831TCONS_00019412-exon-sc0000326-1510915933:158736..158831Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1510915933:157262..157390TCONS_00019412-exon-sc0000326-1510915933:157262..157390Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1510915933:154311..155450TCONS_00019412-exon-sc0000326-1510915933:154311..155450Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1510915933:153762..154077TCONS_00019412-exon-sc0000326-1510915933:153762..154077Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1491911889:159231..159277TCONS_00019412-exon-sc0000326-1491911889:159231..159277Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1491911889:158736..158831TCONS_00019412-exon-sc0000326-1491911889:158736..158831Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1491911889:157262..157390TCONS_00019412-exon-sc0000326-1491911889:157262..157390Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1491911889:154311..155450TCONS_00019412-exon-sc0000326-1491911889:154311..155450Clytia hemisphaericaexon
TCONS_00019412-exon-sc0000326-1491911889:153762..154077TCONS_00019412-exon-sc0000326-1491911889:153762..154077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:153762..159277 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	6.17704e-09	7.29823e-10	0	0	0.190247	8.37354e-09	1.21834e-09	0	0	0	0	0.2379	0.000225821	3.86699e-10	0.0451075	0	0.0752029	2.22628	1.69508	0	5.4468e-09	1.0298e-09	4.18467e-10	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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