TCONS_00019411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019411
Unique NameTCONS_00019411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019411 ID=TCONS_00019411|Name=TCONS_00019411|organism=Clytia hemisphaerica|type=transcript|length=1707bp
ATCTCAAGATATCACGTGTCAAAAACCAAAAACATGCTCTGTAATAAAAT
CGACTTGTGCTCATTGCAAATCTGGTTATTATTCAATGGCAACTGGTGAA
AAAGCATTTTGTGACATGGGAAGTGACGATCAGTTTATACCAAGTTGTAA
AACAATCAAAGACGCTTACCCAGAATCCTCTTCGGGTTTTTATCACCTTG
GTTACAAAGATAACATCTTGGAATTTTATTGTGATATGACTGCTGATGCa
gGTGGATGGACAATGGTAGCCAACATTACAATAACATCAAACGCTGAAGC
CGAAAGATATCTTCTAAGAAATATCAAGCAAAATGGTTTAGGAAGCCTGA
AAAATGTGCGATCGGGAGTATACACTTTATCGCTCGGAACGCTATCTACA
TTTCAAGAAAGGAATGAGTTTACGGAAATCCGTATCAAATGCCAAAAGAC
GTATTTAGGATTTCAAGTTGACGTTGTTTTGGGTTATGGCTCCGAACTTG
TCGGTGGTGTAACACCGGAACGGCATGTAAATTTATACCGATTCCTCCCG
AGTGATTCCCGACACACTCAAGTATCGGGCAGTTAtaaaaaagcagattt
tgcTAATTTATACAATCATGCTATTTTCGTTCCTGGTCAATATCATATAG
TCATTAATAACGATCCAAATCGTCGCAGATGGGAGTGTGGTGATTACGAC
CAGATTCAACCCAACGGTAAAACCTACTCACCGATCGGATCATGGCAATT
TTTTGTTCGATAAAGTGGAAACTGTTTCACATCGAATTGTGTAAATATAA
TCAAATTTAATCTAACGGTAAAACGTACTCCAGGATCGGAtcaaggcaat
tttttgttaGATCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGAA
ATATgtaaatataattattttttccgCACACATTCAACGTACTCCACGTA
TAACCAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGGATCATGGC
AATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGAT
GAAATATgtaaatataattattttttccgCACACAGTAAAACGTACTCCA
CGTACAATCAGATTCAATCTAGCGGTAAAACGTACTCCAGGATCGGATCA
TGGCAATTATTTGTTAGATCAAACATTGAAAAAGTTGCATAAACTTTTTA
CGATGAAATATgtaaatataattattttttccgCACACATTCAACGTACT
CCACGTATAACCAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGGA
TCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCTT
TTATGATGAAATATgtaaatataattattttttccgCACACAGTATGATG
TACTCCACGTACAATCGGATTTAATCTAACGGTAAAACGTACTCCAGGAT
CGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAA
CTTTTTACGATGAAATATgtaaatataattattttttccaCACGCAGTAA
AACGTACTCTTgaatgcaattaacgtgcaaaagagattaacgcaaaggtt
gattcgaactcgtacaaacacattgATGGTAATGATtgtgtgaaaaataa
aatatatttttagattcagcatGGTTCGCTATTTCGAGCTGTGGAGTAAG
GTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000326:153762..159256-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019411 ID=TCONS_00019411|Name=TCONS_00019411|organism=Clytia hemisphaerica|type=transcript|length=5495bp|location=Sequence derived from alignment at sc0000326:153762..159256- (Clytia hemisphaerica)
ATCTCAAGATATCACGTGTCAAAAACGTAAGTATCCCAGCTGACACACAA
CGTTGTTCCAACGTTTTTCTAACGCTCACAACGTCCATATAACGTTAAAT
GAATGTTGAAACAACGTTGTGTGTCAAAAACGTAAGCATAAGAGATTTTG
ATCGAATGTGATTAAATTTCGAACCATTACCTCCTAGATGAGTGTTTGGT
TAAAAGTTTTATTTTTACATAAGTGTTCCCGTCGTTTCATATCAGACACA
TATTTCATATCAGAACATTGTCTGGCTATTTTTATGTTATGTTGATATAA
GAAAAAAAATGTTTTTCTTTCCTCTTTCCTCTTTCTGAAATTCTTAAATT
AAAATTTATGAGTAAGCAAACGATAAGTAGTCTAGTTCAAACCTAGTAAC
CGTTTTTTAATAATTTTTCTCATAGCAAAAACATGCTCTGTAATAAAATC
GACTTGTGCTCATTGCAAATCTGGTTATTATTCAATGGCAACTGGTGAAA
AAGCATTTTGTGACATGGGAAGTAAGAAACTCATCTTTCTTGATGATAAA
GTTATATAAAGTAAAATGAAATTTCATTCTCAAAAACCTATTCAGTCATC
TTGGGAATTAAATATGTACTCTTAGGTTCCAAATAAACGGGCCCCCCCCC
CGCTTGTTAATTTTTCGAAAATTTTCCAACCCCCCCGGACCTTATTAGGA
CCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCTGT
TTATTTGGAACCTAAGAGTATTGACTCAATAGAGAATTTCAATCTTCTTC
CAGTTATAACCAATGTTCTATAATGATGAGTTTTGAGGGTTTTCTTCATA
TAAAGATTCTACCACCTTATTTCATTCGGGAAGATTCACCGCGCCACTAT
TCCGCCATTATAGTATTTTTTCTTACGGGGGCGGACCTCTATTATTTGAA
CATTTCCGTAAATCGAACTAAAACATTATTCCCCTCAGCTGAAAATTGGT
ATCTATTACTCTCTGTAATTCGAATCTTTTTCTATCTATTTTTCTATAGT
ATTTCTGTAATTCGAACTAAAACANATCGAACTGAAACATTTTCCCCCTC
AGCTGAAAATTGGTATCTATTACTCTCTGAAATTCGAATCTTTTTCTATC
TATTTTTCTATAGTATTTCTGTAAATCGAACTGAAACATTTCCCCCCTCA
GCTGAAAATTGGTATCTATTACTCTCTGAAATTCGAATCTTTTTCTATCT
ATTTTTCTATAGTATTTCTGTAATTCGAACTAAAACATTTTTCCCCTCAG
CTATGAAAAGTGGTATGAATTACCTTCTGTAATTCGAATCTTTCTCTATC
TCGAAGAAAACTTGAATCAGAAATAGTCAACTATAAAAACAAATAAAATT
TTTCATTGTCAAAAAGGTGACGATCAGTTTATACCAAGTTGTAAAACAAT
CAAAGACGCTTACCCAGAATCCTCTTCGGGTTTTTATCACCTTGGTTACA
AAGATAACATCTTGGAATTTTATTGTGATATGACTGCTGATGCAGGTGAG
TTTTTTTTTTTTAACTTTTTCAAACCAAAATCAAAATTCTATACAGGGTG
TACCGAAAAAAAGTATCGAATTCGAACATGATTCCGAGAAGAAGGTTGTG
TGTGTTGCGTATGTGTAACAAAATGTCAGAAAATGTATACCAACACAATA
ATATTTTTGCAACAGTCATTATAATTGAAAATAATTAACTTTCTTTACAA
TTTTCATGACGTTAAAGTTAGTGAGAATTGTTTTTTCGCAAAAGTTATTC
ATATATATGTCTCATGACAATTAATGGCACAGAGAGAAACTTTGATAAAC
ATTCCAAGTTTAATGGAACACACACAAGAACTTTGTTTACTTCTATTTAC
CCAGAGAAAATCTGAGATTTTGAGAATTTTACGTGGATTTAATNCCCCCC
TCAGCTGAAAAGTGGTATCTATTACTCTCTGAAATTCGAATCTTTTTCTA
TCTATTTTTCTATAGTATTTCTGTAATTCGAACTAAAACATTTCCCCCCT
CAGCTGAAAATTGGTATCTATTACTCTCTGTAATTCGAATCTTTTTCTAT
CTATTTTTCTATAGTATTTCTGTAATTCGAACTAAAACATTTTTCCCCTC
AGCTATGAAAAGTGGTATGAATTACCTTCTGTAATTCGAATCTTTCTCTA
TCTCGAAGAAAACTTGAATCAGAAATAGTCAACTATAAAAACAAATAAAA
TTTTTCATTGTCAAAAAGGTGACGATCAGTTTATACCAAGTTGTAAAACA
ATCAAAGACGCTTACCCAGAATCCTCTTCGGGTTTTTATCACCTTGGTTA
CAAAGATAACATCTTGGAATTTTATTGTGATATGACTGCTGATGCAGGTG
AGTTTTTTTTTTTTTGACTTTTTCAAACCAAAATTAAAATTCTATACAGG
GTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTGAGTAGAAAAGT
TTGTGTGTGTTATCGCTAAAATATAAGAACGTTCTCCATCACACAGGCTT
ATTACAACAGGTAGTTACAACGTATAAATTAATTGTAATGACAAAGAAAA
AAGAGAGAGAGCTTAAAATACAATTTTGTGAACACGCACATAAAACTTTC
TACTTATAGTTGTGTTTCGACTCGATACTTTAATTAGGGACACCCTGTAC
AGGGTGTACCGAAAAAAAGTATCGAATTCGAACATGATTCCGAGTAGAAG
GTTGTGTGAGTTGCGTATGTTTAATAAAATGTAAGAAAATGTATACCAAC
ACAATAATATTTTTGCAACAGCCATTATAATTAAAAATAATTAACTTTCT
TTACAATTTTCATGACGTTAAAGTTATTGAGAGTTGTTTTTCCGCAAAAG
TTATTCATAAATAATGTCTCATGACAATAGACCTAATCGGAGTTTTTGAT
TTTTTTTAAAAAGTGATGCATTATGGGATTGTTTCGAGTGTATTACAATA
GAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAATACACTCGAAA
CAATCCCACGATACACCGTTTTTTTAGAAAAATAAAAAACTCCGATAAGA
TCTAATTAATGGCAGAGAGAGAAACTTTGATAAACATTTCAAGTTTAATG
GAACAGACACAAGAACTTTGTTTACTTCTATTTACCCAGAGAAAATTTGA
CAATTTGAGAATTTTACGTGGATTTAATTTCGTAAGTCAATGATCTAACT
CAATTGTAATGGCGCAAATTTACGAAAAACGCGAATATCGACATAAAGAA
GGTAAAATTGTTTTAGGCGAATGAAAGAGAATAAATACGGTCTGCATTTT
TTTAAGGTGGATGGACAATGGTAGCCAACATTACAATAACATCAAACGCT
GAAGCCGAAAGATATCTTCTAAGAAATATCAAGCAAAATGGTTTAGGAAG
CCTGAAAAATGTGCGATCGGGAGTATACACTTTATCGCTCGGAACGCTAT
CTACATTTCAAGAAAGGAATGAGTTTACGGAAATCCGTATCAAATGCCAA
AAGACGTATTTAGGATTTCAAGTTGACGTTGTTTTGGGTTATGGCTCCGA
ACTTGTCGGTGGTGTAACACCGGAACGGCATGTAAATTTATACCGATTCC
TCCCGAGTGATTCCCGACACACTCAAGTATCGGGCAGTTATAAAAAAGCA
GATTTTGCTAATTTATACAATCATGCTATTTTCGTTCCTGGTCAATATCA
TATAGTCATTAATAACGATCCAAATCGTCGCAGATGGGAGTGTGGTGATT
ACGACCAGATTCAACCCAACGGTAAAACCTACTCACCGATCGGATCATGG
CAATTTTTTGTTCGATAAAGTGGAAACTGTTTCACATCGAATTGTGTAAA
TATAATCAAATTTAATCTAACGGTAAAACGTACTCCAGGATCGGATCAAG
GCAATTTTTTGTTAGATCAAACATTGAAAAAGTTGCATAAACTTTTTACG
ATGAAATATGTAAATATAATTATTTTTTCCGCACACATTCAACGTACTCC
ACGTATAACCAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGGATC
ATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCTTTT
ATGATGAAATATGTAAATATAATTATTTTTTCCGCACACAGTAAAACGTA
CTCCACGTACAATCAGATTCAATCTAGCGGTAAAACGTACTCCAGGATCG
GATCATGGCAATTATTTGTTAGATCAAACATTGAAAAAGTTGCATAAACT
TTTTACGATGAAATATGTAAATATAATTATTTTTTCCGCACACATTCAAC
GTACTCCACGTATAACCAGATTCAATCTAACAGTAAAACGTACTCCTGGA
TCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAA
ACCTTTTATGATGAAATATGTAAATATAATTATTTTTTCCGCACACATTC
AAGGTACTCCACGTACAATCGGATTTAATCTAACGGTGAAATGTACTCTC
TGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTATT
TTTTCCGCACACAGTTTGATGTACTCCACGTACAATCGGATTTAATCTAA
CGGTGAAATGTACTCTCAGGATCGGATCATGGCAATTATTTGTTAGATCA
AACATTAAAGAAGTATTTTTTCCGCACACAGTATGATGTACTCCACGTAC
AATCGGATTTAATCTAACGGTAAAACGTACTCCAGGATCGGATCATGGCA
ATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACTTTTTACGATG
AAATATGTAAATATAATTATTTTTTCCACACGCAGTAAAACGTACTCTTG
AATGCAATTAACGTGCAAAAGAGATTAACGCAAAGGTTGATTCGAACTCG
TACAAACACATTGATGGTAATGATTGTGTGAAAAATAAAATATATTTTTA
GATTCAGCATGGTTCGCTATTTCGAGCTGTGGAGTAAGGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010903XLOC_010903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019411-exon-sc0000326-1575043694:159231..159256TCONS_00019411-exon-sc0000326-1575043694:159231..159256Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1575043694:158736..158831TCONS_00019411-exon-sc0000326-1575043694:158736..158831Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1575043694:156410..156538TCONS_00019411-exon-sc0000326-1575043694:156410..156538Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1575043694:154311..155450TCONS_00019411-exon-sc0000326-1575043694:154311..155450Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1575043694:153762..154077TCONS_00019411-exon-sc0000326-1575043694:153762..154077Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1510915933:159231..159256TCONS_00019411-exon-sc0000326-1510915933:159231..159256Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1510915933:158736..158831TCONS_00019411-exon-sc0000326-1510915933:158736..158831Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1510915933:156410..156538TCONS_00019411-exon-sc0000326-1510915933:156410..156538Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1510915933:154311..155450TCONS_00019411-exon-sc0000326-1510915933:154311..155450Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1510915933:153762..154077TCONS_00019411-exon-sc0000326-1510915933:153762..154077Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1491911889:159231..159256TCONS_00019411-exon-sc0000326-1491911889:159231..159256Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1491911889:158736..158831TCONS_00019411-exon-sc0000326-1491911889:158736..158831Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1491911889:156410..156538TCONS_00019411-exon-sc0000326-1491911889:156410..156538Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1491911889:154311..155450TCONS_00019411-exon-sc0000326-1491911889:154311..155450Clytia hemisphaericaexon
TCONS_00019411-exon-sc0000326-1491911889:153762..154077TCONS_00019411-exon-sc0000326-1491911889:153762..154077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:153762..159256 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.27859	0.143971	0	0	0	0.122285	0.141606	0.0801512	0	0	0	0.743374	0.9409	0.166343	0	0	0	0.00980594	0.0788074	0	0.274597	0.12137	0.27332	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top