TCONS_00019410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019410
Unique NameTCONS_00019410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019410 ID=TCONS_00019410|Name=TCONS_00019410|organism=Clytia hemisphaerica|type=transcript|length=1334bp
CCGAAAGATATCTTCTAAGAAATATCAAGCAAAATGGTTTAGGAAGCCTG
AAAAATGTGCGATCGGGAGTATACACTTTATCGCTCGGAACGCTATCTAC
ATTTCAAGAAAGGAATGAGTTTACGGAAATCCGTATCAAATGCCAAAAGA
CGTATTTAGGATTTCAAGTTGACGTTGTTTTGGGTTATGGCTCCGAACTT
GTCGGTGGTGTAACACCGGAACGGCATGTAAATTTATACCGATTCCTCCC
GAGTGATTCCCGACACACTCAAGTATCGGGCAGTTAtaaaaaagcagatt
ttgcTAATTTATACAATCATGCTATTTTCGTTCCTGGTCAATATCATATA
GTCATTAATAACGATCCAAATCGTCGCAGATGGGAGTGTGGTGATTACGA
CCAGATTCAACCCAACGGTAAAACCTACTCACCGATCGGATCATGGCAAT
TTTTTGTTCGATAAAGTGGAAACTGTTTCACATCGAATTGTGTAAATATA
ATCAAATTTAATCTAACGGTAAAACGTACTCCAGGATCGGAtcaaggcaa
ttttttgttaGATCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGA
AATATgtaaatataattattttttccgCACACATTCAACGTACTCCACGT
ATAACCAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGGATCATGG
CAATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGA
TGAAATATgtaaatataattattttttccgCACACAGTAAAACGTACTCC
ACGTACAATCAGATTCAATCTAGCGGTAAAACGTACTCCAGGATCGGATC
ATGGCAATTATTTGTTAGATCAAACAttaaagaagtattttttcCGCACA
CAGTTTGATGTACTCCACGTACAATCGGATTTAATCTAACGGTGAAATGT
ACTCTCAGGATCGGATCATGGCAATTATTTGTTAGATCAAACAttaaaga
agtattttttcCGCACACAGTATGATGTACTCCACGTACAATCGGATTTA
ATCTAACGGTAAAACGTACTCCAGGATCGGATCATGGCAATTATTTGTTA
GATCAAACATTAAAGAAGTTGCAGAAACTTTTTACGATGAAATATgtaaa
tataattattttttccaCACGCAGTAAAACGTACTCTTgaatgcaattaa
cgtgcaaaagagattaacgcaaaggttgattcgaactcgtacaaacacat
tgATGGTAATGATtgtgtgaaaaataaaatatatttttagattcagcatG
GTTCGCTATTTCGAGCTGTGGAGTAAGGTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000326:153762..155402-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019410 ID=TCONS_00019410|Name=TCONS_00019410|organism=Clytia hemisphaerica|type=transcript|length=1641bp|location=Sequence derived from alignment at sc0000326:153762..155402- (Clytia hemisphaerica)
CCGAAAGATATCTTCTAAGAAATATCAAGCAAAATGGTTTAGGAAGCCTG
AAAAATGTGCGATCGGGAGTATACACTTTATCGCTCGGAACGCTATCTAC
ATTTCAAGAAAGGAATGAGTTTACGGAAATCCGTATCAAATGCCAAAAGA
CGTATTTAGGATTTCAAGTTGACGTTGTTTTGGGTTATGGCTCCGAACTT
GTCGGTGGTGTAACACCGGAACGGCATGTAAATTTATACCGATTCCTCCC
GAGTGATTCCCGACACACTCAAGTATCGGGCAGTTATAAAAAAGCAGATT
TTGCTAATTTATACAATCATGCTATTTTCGTTCCTGGTCAATATCATATA
GTCATTAATAACGATCCAAATCGTCGCAGATGGGAGTGTGGTGATTACGA
CCAGATTCAACCCAACGGTAAAACCTACTCACCGATCGGATCATGGCAAT
TTTTTGTTCGATAAAGTGGAAACTGTTTCACATCGAATTGTGTAAATATA
ATCAAATTTAATCTAACGGTAAAACGTACTCCAGGATCGGATCAAGGCAA
TTTTTTGTTAGATCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGA
AATATGTAAATATAATTATTTTTTCCGCACACATTCAACGTACTCCACGT
ATAACCAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGGATCATGG
CAATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGA
TGAAATATGTAAATATAATTATTTTTTCCGCACACAGTAAAACGTACTCC
ACGTACAATCAGATTCAATCTAGCGGTAAAACGTACTCCAGGATCGGATC
ATGGCAATTATTTGTTAGATCAAACATTGAAAAAGTTGCATAAACTTTTT
ACGATGAAATATGTAAATATAATTATTTTTTCCGCACACATTCAACGTAC
TCCACGTATAACCAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGG
ATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCT
TTTATGATGAAATATGTAAATATAATTATTTTTTCCGCACACATTCAAGG
TACTCCACGTACAATCGGATTTAATCTAACGGTGAAATGTACTCTCTGGA
TCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTATTTTTT
CCGCACACAGTTTGATGTACTCCACGTACAATCGGATTTAATCTAACGGT
GAAATGTACTCTCAGGATCGGATCATGGCAATTATTTGTTAGATCAAACA
TTAAAGAAGTATTTTTTCCGCACACAGTATGATGTACTCCACGTACAATC
GGATTTAATCTAACGGTAAAACGTACTCCAGGATCGGATCATGGCAATTA
TTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACTTTTTACGATGAAAT
ATGTAAATATAATTATTTTTTCCACACGCAGTAAAACGTACTCTTGAATG
CAATTAACGTGCAAAAGAGATTAACGCAAAGGTTGATTCGAACTCGTACA
AACACATTGATGGTAATGATTGTGTGAAAAATAAAATATATTTTTAGATT
CAGCATGGTTCGCTATTTCGAGCTGTGGAGTAAGGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010903XLOC_010903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019410-exon-sc0000326-1575043694:154528..155402TCONS_00019410-exon-sc0000326-1575043694:154528..155402Clytia hemisphaericaexon
TCONS_00019410-exon-sc0000326-1575043694:153762..154220TCONS_00019410-exon-sc0000326-1575043694:153762..154220Clytia hemisphaericaexon
TCONS_00019410-exon-sc0000326-1510915933:154528..155402TCONS_00019410-exon-sc0000326-1510915933:154528..155402Clytia hemisphaericaexon
TCONS_00019410-exon-sc0000326-1510915933:153762..154220TCONS_00019410-exon-sc0000326-1510915933:153762..154220Clytia hemisphaericaexon
TCONS_00019410-exon-sc0000326-1491911889:154528..155402TCONS_00019410-exon-sc0000326-1491911889:154528..155402Clytia hemisphaericaexon
TCONS_00019410-exon-sc0000326-1491911889:153762..154220TCONS_00019410-exon-sc0000326-1491911889:153762..154220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:153762..155402 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.405455	0.66561	0.202069	0	0.0261471	0	0	0	0.420903	0	0	0	0	0	0	0	0	0	0	0	0.154287	0.129972	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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