|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019407 ID=TCONS_00019407|Name=TCONS_00019407|organism=Clytia hemisphaerica|type=transcript|length=736bp
gtctgatttAAAATTCACCAACATTCTGCTGTACGCTGATAGAGGTCTGA
CGAACAGTATTTTCGGCACAACCAGCAATCAGACGAATGGAAATAACAGC
CAGGTTGCAACTCCAAACACGTTTGAATTCACACAATTCCACAGGTCAAT
TTCAGAGAATAGTTTCTTAAGTATCAAAAAGGAGGACGTGGGTTTGGCGC
CAGGGAATGGACTCGCAGGGCCAGTAAATGGTGGTGTCGCTGATACGAGT
CTACAGCAACCAATTGATGATAGCTTTGGTGTTGGATATTTGAGCAGATC
GCCACGTGGAGGTGGTGAGCACGGTGAAGTCTTGTCAAAAGGAAGCAATG
ACGTCACACCTACAATTTTTGAAGAAACAGGCAATCATGCAGAAAATGGG
CGAGGAATACGAAACGAAGCATTCGATGTAAATTCAAGTCCATCACCATC
GATTCCCTCGAATGAATCGTTTAATGGTGGCTTTAAACTCGATTTTGGAG
CATCAATCAATTCGACAAATACGTTAACTGACCGCCGTaaaaaaaatcgt
ttaaataagTTCAAATCGACTCGCCAGCAGATGAGTGCTAGATTGCTTGA
AAGGCAGAAGAAGGATTTGGAAGTCCATATTATAGATAAGATATCCAGAT
ATGTATACCCGATATCATTTCTGATTTATAATGTCATTTATTTTACATAT
GCTTTTGCTGAATGGAGTGGGTAGGAACGGCGTCTN Run BLAST on NCBI transcript from alignment at sc0000326:101365..104224- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019407 ID=TCONS_00019407|Name=TCONS_00019407|organism=Clytia hemisphaerica|type=transcript|length=2860bp|location=Sequence derived from alignment at sc0000326:101365..104224- (Clytia hemisphaerica)
GTCTGATTTAAAATTCACCAACATTCTGCTGTACGCTGATAGAGTAAGTG
TGGCCGTGGGAATAATTCAGGAGACGGGATAAATTTGAAAACGAGTTTCG
TTCAAAACCCCGAAACCAAACTCTTCCAAACTCTACCGCCACTATTTTTT
CCGTAATCCACCCTGACACCCTGACTCCATAGTAAAAGAAAGCCGCGGCT
GGAATGATAACATCTGAATGTCTGTTGTTCTATCTATGTCGTATTTGATG
ACTATTTCTTGATCAAGAATACAGTAAGATGGCATCTTTAATGGTAAATT
GTATAGGTTTGTCGTTAATACTTACTTCTCAGTGCGTTTTAGACATTAAT
GATATGCCTTTGATAATACATTTGAATTATAAAATCATTGTAAAGGAAAA
ATCAACACTAAGAAATTTAAAAAAGCACAAAATGGCAGGGCTGAAAAAAC
TCAAAAATTAATAAAGTATTTCAGTGAAATCTTCTTAGAAATCAATGAAA
AAGTACATCAAGATAATACTGTGAAAATTTCAAGCCAGCACCTTTAAAAT
TTATCATTTAAACTGACAGGAAAGTTGTCATCTTGAATATAGTTCTTATA
ATTTCAACTTTGTCGAAAAACTATTGTTTCCACAAAATACCCCTAAAATA
TGTCCAAAATTAGTTCAAGTGTTCTATTGGGTACATATTCAAAGATATCT
AGCAACAAAAAAAAATTTTTGTGAAGGAAATTAAGAGAAAATTTTCAAAA
ACTATTTACCAATAATAAACTGAGCATCTTGATGTTCTTATAAAGCTCGG
AGACAGAGATGGAACAGCAATTAACTGAAAAGACAATGCGGTACATATTC
CAGCCGCGGCTTTCTTATACTATGCTGACTCGTACATATTTTCCCGCGTT
TACTGACCCTCTAAACGGACAATAGCATTATCTACGAATGTTCATTCTAA
TCTTTTCAGGGTCTGACGAACAGTATTTTCGGCACAACCAGCAATCAGAC
GAATGGAAATAACAGCCAGGTTGCAACTCCAAACACGTTTGAATTCACAC
AATTCCACAGGTCAATTTCAGAGAATAGTTTCTTAAGTATCAAAAAGGAG
GACGTGGGTTTGGCGCCAGGGAATGGACTCGCAGGGCCAGTAAATGGTGG
TGTCGCTGATACGAGTCTACAGCAACCAATTGATGATAGCTTTGGTGTTG
GATATTTGAGCAGATCGCCACGTGGAGGTGGTGAGCACGGTGAAGTCTTG
TCAAGTAAGTTTTAATGGGTTTTTCTAGAAATAGTCCGTGCCCCTCTGCT
GCCTCAACAGTGGGGGTAAATTCTTTTTCTTGAAAAGCCCAATCTAGCTG
ACACGTTTTTCAAATGTCTATAACGTCAATATTACGTCAGATGAACGTTG
AAACAGCGTCGTTGAAACCAAGTTGTGTGCCGGCTGGCAAGATACTATAG
TAAAGTCTACTTCTGAAAGAATTGTGCTTTCTGATGGCGATCTTTAGAGT
AATGTATTTGTTTTGTTTTATGTATTCGGGATAAATCGAGGGGGACGGTA
TAAAGCAGTTGACATGTCTCCAAAATCATCACCACCTTGCTCGACGACTG
TAAAAACACCAAAATACCGTCGTCTATTTAGATGAGCAAAAAGGCGATAT
AAGAGCCGTACATCGACTATCTACTTTGTTTTGTATCGATTTCACTTACC
GTCGCCCTCGATATCCTCCCATACATAAACTCGGTAATGTATTTGTTTCA
TGCACTTTTAAATCAAAGTGACCAGAGGCTCGTACCCCAGCTGGCACACA
ACGTTGTTTTAACGTTCATCTAACGTTATATGGACGTTGTGAACGTTATA
TAAACGTTGAAACAACGTTGTGTGCCAGCTGGTACATGTGACTCGGATTT
GAAAGGTAGATATTAAATGTCTACTTCATAATTGAAAACTAATTTCTTTA
AACAAAACTTAATCCGAATAAGCTCTTCTTCTTGATTTCGATATTCAAAA
TACAAAAAAGATGGTGACATTTCTGGATATTTCGACTTCTTTATCAAGTC
ATTGTGTCAACAGTAAAATGTTACTGCAAAATCAGAGTAGTCTTGTAAAT
TCATGATATGCACCATTGCAATGTCTTCCGTTCCACCCAATAGCTGATTG
GTTGAAAGTGACGTATTGACTGCTTTTACGTCACTTCCAACCAATGAGCT
ATTGGTTCCATGACGTAATGTCAGAAGACATTGCAGTGGTGCATACCATG
AATAAATCATCTGAAAAGAGCCTAGTATGCCTCCTACCAGCGTGCCTTTT
TTTGAAATTTTGAAAAAAGTTTTACGTCAAGGTTTCTAAATGATACCGAG
TTTATGTATGTGTGTTTCTCTGCGACGGAGACGGTATGGTTATGATTTGT
CTACATCCTGACTGACTGAGGATGACGGCAAATCAACACTTTTACCGCTT
ATATTTTAATAGAAGGAAGCAATGACGTCACACCTACAATTTTTGAAGAA
ACAGGCAATCATGCAGAAAATGGGCGAGGAATACGAAACGAAGCATTCGA
TGTAAATTCAAGTCCATCACCATCGATTCCCTCGAATGAATCGTTTAATG
GTGGCTTTAAACTCGATTTTGGAGCATCAATCAATTCGACAAATACGTTA
ACTGACCGCCGTAAAAAAAATCGTTTAAATAAGTTCAAATCGACTCGCCA
GCAGATGAGTGCTAGATTGCTTGAAAGGCAGAAGAAGGATTTGGAAGTCC
ATATTATAGATAAGATATCCAGATATGTATACCCGATATCATTTCTGATT
TATAATGTCATTTATTTTACATATGCTTTTGCTGAATGGAGTGGGTAGGA
ACGGCGTCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019407-exon-sc0000326-1575043694:104182..104224 | TCONS_00019407-exon-sc0000326-1575043694:104182..104224 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1575043694:102971..103265 | TCONS_00019407-exon-sc0000326-1575043694:102971..103265 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1575043694:101365..101762 | TCONS_00019407-exon-sc0000326-1575043694:101365..101762 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1510915933:104182..104224 | TCONS_00019407-exon-sc0000326-1510915933:104182..104224 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1510915933:102971..103265 | TCONS_00019407-exon-sc0000326-1510915933:102971..103265 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1510915933:101365..101762 | TCONS_00019407-exon-sc0000326-1510915933:101365..101762 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1491911889:104182..104224 | TCONS_00019407-exon-sc0000326-1491911889:104182..104224 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1491911889:102971..103265 | TCONS_00019407-exon-sc0000326-1491911889:102971..103265 | Clytia hemisphaerica | exon |
| TCONS_00019407-exon-sc0000326-1491911889:101365..101762 | TCONS_00019407-exon-sc0000326-1491911889:101365..101762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:101365..104224 - |
Blast
The following BLAST results are available for this feature:
|
