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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019389 ID=TCONS_00019389|Name=TCONS_00019389|organism=Clytia hemisphaerica|type=transcript|length=1152bpRun BLAST on NCBI transcript from alignment at sc0000326:309458..316230+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019389 ID=TCONS_00019389|Name=TCONS_00019389|organism=Clytia hemisphaerica|type=transcript|length=6773bp|location=Sequence derived from alignment at sc0000326:309458..316230+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019389 vs. Swiss-Prot (Human)
Match: FAF2 (FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 2.369e-43 Identity = 114/293 (38.91%), Postives = 166/293 (56.66%), Query Frame = 3
Query: 3 YLGSYGQVLADAKKELRFLLVYLHAPHHQSTPEFCRNVLSNENFREYTINRRLLFWGCDISTNEGHRVSRAMRETTYPFLAVVCLREGRMTVVWRIEGCLDLDRLIAVCEQVFNDNEAALVAAQAERNERNFSRSLREEQDQDFLXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXANRRQVCRTKFESLVE-----PSQGDEGVVKLRIRLSNGENMQRFFMKSDTLQLLYDYVLSNDASPSEFQLRTSFPRNVYPL---DETNCERTLESIGIKTSTQFLV 857
Y G+Y Q L DAK+ELRFLLVYLH HQ + EFCRN L IN R+LFW C + EG+RVS+A+RE TYPFLA++ L++ RMTVV R+EG + D LI + + N+ LV+ + ER ERN ++ LR++QD+ +L SL D++K K +E K+ KE+E ++ RRQ + + E +E PS D VK+ +L N ++R F S +L +++D++ S SP +FQ+ +FPR V P +E TL+ G+ + V
Sbjct: 155 YQGTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISL-INTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQEKERKK-------REERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPESVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEWPNPPTLQEAGLSHTEVLFV 439 The following BLAST results are available for this feature:
BLAST of TCONS_00019389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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