TCONS_00019385 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019385
Unique Name	TCONS_00019385
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1954

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000326:261804..269260+

transcript sequence

>TCONS_00019385 ID=TCONS_00019385|Name=TCONS_00019385|organism=Clytia hemisphaerica|type=transcript|length=1954bp
AATCAAAAAGACGAAGAACAAAAAATCGAATTGACAACAATGACCATTAA
AAACGAAGTTATTGACGATGTTTCCCCGACTGGATATCCAAGACCCGAGT
CTGCGTCTCCTTCTGGTTACCCAAGACATTCATCAACATCGTATCGGAGA
TATCCATCAGAGAATCAAACTGCTGAAAGTCGTTCATCACTAGAAGATTG
GGATGAGGAGCCCGAATCACCTTCCAGATTCCCTGCTTCTAAGGTGACAC
TTATAAATGAGGAGCCTGAACAGCGTGGTCAGCATTATTATGAGAGCTAT
CAGACAAGGCAAAGTCCTGACCCACGAAGACGCATTGATCAAGAATTAAA
CTTAGATATGGACAGCCAATCACCGAAATCTCCTGGCTTTTATAGTAATG
AAACTAGAAGAAGTAACCCCGATTTATCAAAATATGATCGCCAATCTTCA
TCACAAAGAAGTAGTGGCTCACCTCACGAAAGTATTGAGCATTCAACCAT
AAAAAGACAATTTTCAAGACCAGATGAGTCTTTAAAACGGAACACAATTG
TTGAGCCACCACCGGTAAGAGAACATCGCTTTGAAGGTGCTTATAAAACA
ACTGGTGGTGATGCAGCTGAAAAAGTCTGGCTATATGAAGAGAATATCAA
AAAGCTTTACAATCTGGATAAGAACCCGCAACGTCAAATATTTCTGGACG
AATTTTTCAGCTATAGAAGAACTCATGGCCTTTATTGCAAGATTCCCGTT
ATCGCCCGAAAACCTTTAGACGTGTTTTTACTGTATAGCATCGTTCAAAA
GTACGGTGGCTTTGAACAGACGATGAAAAATAGAATGTGGAGCCAAATAG
CCAGAGAATTGGAATTGCCGAGAACGATGACCAGTGGGGCGTTCACGCTG
AAATTAAAGTATATTCGCCTCCTGTATCAATTCGAATGTTACAAAGTCAA
GAAACAAGTTAACAAATCAATACTATTCAATGAAGCATCCATCTTACCAG
AACAGATGTCACAGATGAATGATCACGTCCCCCAGCACCTATCAATCCAC
CAGCAACAGAATCCAGCTTATAGACAACATCAACAAACATCGAAATCATC
TTCCAATGACCACCGAAGGGGAAATGATGATTATTATAGGGAACGACGTG
ATGAACACTCCAGAGAAAATATGATGAGAGTAAAACAAAGAGATGACCAA
TTCAATGAAAGACCAACTTTTTCCAAAACCGATCGGAATCGCTATTCACC
ACACAGAGATACTGGGGGCTCATCACCATCCTCAAACAACGATATCGTTT
TACGATCATCTACTCCACCTTCTTCCGATCGCAATCATCGGGATCACCAT
CGGCGTCTTCCACCTTCGATTCATAGTCGTAAAAGAGGAGTCCATGAAGA
ATTGGACGATGATACCGATACAGGAACATCGGGATCACAACCTAAATCGC
CTAGACTGGATACACAATCTGTGTCTAGATTTTCTGTTGATGTTGTTGAA
TCTTCGAGAGATAGTATTGTGTTAAAGGTCAGAATGAACAATGATGTTTT
TGAAGGTGTTCTTGAATGCACGCAGCGGGGAGATATCAGAGATTATGCTG
CTGAACAAAAAATGTAACCAAGAGAGAAAGAATATACTGCACAGAGACTA
CGAAGAAAAGTGTCATCTgagtaattcatgatattcatgacgtaatattt
tctacggaaagaccccagtTTGTGTAAGTAGTGGCAAGTTTTGAACAACT
TTTCTCTAGCTAAAACTcaccactactggcaaaaaccggggtatttccgt
agaaaacattaagtcataaatatcatgaatttgtaAATTGTACACCATGT
AATAAAACTCAGACACGGTAAGAGTGATACAAGGATATTGTAAATCAAGA
AGTAAACAAGGATTCTAAAATACCATTGAGTCATCGCCAAAGTATCATTA
AATC

Run BLAST on NCBI

transcript from alignment at sc0000326:261804..269260+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019385 ID=TCONS_00019385|Name=TCONS_00019385|organism=Clytia hemisphaerica|type=transcript|length=7457bp|location=Sequence derived from alignment at sc0000326:261804..269260+ (Clytia hemisphaerica)
AATCAAAAAGACGAAGAACAAAAAATCGAATTGACAACAATGACCATTAA
AAACGAAGTTATTGACGATGTTTCCCCGACTGGTAGGTGATTACACTTTT
CTCCgttaaaagaacatccaaagatttTTTGAGCCTTAGGTTGCCCTTAG
CTTTTTATtttaaagcttaaaaatgttcttaacgtgtaattcaatttttt
tcaccattttagaAGTGATTTTGtgcgatttcttaagaaattgggtgttt
tcgagtTTGCAAAGGTTCAAAATGCTCTTACTGTACTTGCTGTTAGTATA
TTGGCCATCgatgccttatgttcttatataatttgttcttaagcAGCATG
TGTACTCTTTTCTGAGAATTCTTGAATTTCGTGAAATTTTATATGCACGT
TCTTCAATTCAATTCAGTTCAattcaaaaatgatttgtttACCTGCataa
attttggtaaaattaagaacagtttaagaaaattttcaggCAAAAGTAAA
GAACGACGGAAGGtataaaaaatgttaaatgttCTTGTAACAAACTTGTA
TTAATCCCTGTTAAGACCCATTTTTGCACCCCTACCCCTTGAAAAATCTG
CAAGAAACTTGCCCCGTTTAGAGTAATAGGCTGATGCAGTTACATTCTCT
CATTAAATACAGCACTAGATAATAATATCTTATCTTTATATATCTAGGAT
ATCCAAGACCCGAGTCTGCGTCTCCTTCTGGTTACCCAAGACATTCATCA
ACATCGTATCGGAGATATCCATCAGAGAATCAAACTGCTGAAAGTCGTTC
ATCACTAGAAGATTGGGATGAGGAGCCCGAATCACCTTCCAGATTCCCTG
CTTCTAAGGTGACACTTATAAATGAGGAGCCTGAACAGCGTGGTCAGCAT
TATTATGAGAGCTATCAGACAAGGCAAAGTCCTGACCCACGAAGACGCAT
TGATCAAGAATTAAACTTAGATATGGACAGCCAATCACCGAAATCTCCTG
GCTTTTATAGTAATGAAACTAGAAGAAGTAACCCCGATTTATCAAAATAT
GATCGCCAATCTTCATCACAAAGAAGTAGTGGCTCACCTCACGAAAGTAT
TGAGCATTCAACCATAAAAAGACAATTTTCAAGACCAGATGAGTCTTTAA
AACGGAACACAATTGTTGAGCCACCACCGGTAAGAGAACATCGCTTTGAA
GGTGCTTATAAAACAACTGGTGGTGATGCAGCTGAAAAAGTCTGGCTATA
TGAAGAGAATATCAAAAAGGTAAGCTTTTGTTAATttatcatcaacatga
aaaatatgaacaatctgattggctaaaaacgcgttCATTAATGTTGTATT
TAATATTGTACCGTGCAAATACAAGAACGCGTTcaaaaaggggtctggta
agcgagatatcatattttgtacaattttatgATTATAGAAGGGTTTCTTT
TTCGCTTCCAATACACAACGACTTACTTAAAGTGTTTATGAAACtaatgt
tttgatctttttaatgaccatTCGATTCTTTtctcgaatgttttgatgtt
gatttcaccAAAAAattggaagagaaaaacaaaacaaaaacagaggcaca
aatggagagagaaagtttcttaatatttttcaagttgatgcACACTTTTA
TTAATCGTACAATattggatatatttttcgagttcagattttcatcatat
tttccgAGGCCGGtgaggaaaatatagaaaactctgaacAAGATTGTACT
CGGCATATTGTACTCGGTACCGTGTTATAactactaggtcacagtgtgga
tgtaaaccacactgaaacgaccacCTTCCATCATGCATCGCATCGCATGa
agctcgcgaaagagcgcgcacacagtattaacgcctacatgtcatctcca
gcacatgttagattattcattgaaaacagattacaatatagtcatttttc
atgtctcgattattcaattccgaataaaagacattcagggaaaaaaaaga
gaaacacctggctaatctagttaaaaaaaccgaaagtgaatggtagacaa
agtaatgagccaaggcaaaacgagattagcgtaccactattaAAGAAACT
GCCTCCAGCAGTCGATTACTTAATTACGGCCCTGGTTTATATCGGCATGG
TTAAAAGATTTACAATTGACTCCCTCTAATTCGATCTATAAGGGACCAAG
ATACGAATTACAGAGGTGAATTTGAACCACTTTTCAGCTAAGGAGATCGA
TATTGTAGTTTGAATTATATAACAATTCGGTTAATAGAGGATCGAATTAG
AAAAGATTTGACTGTATAAGATATTTTACcaccaaaaataaaattacgAT
CATAAAACATTACCCCGTTTATTGCAGAGACAGgaaaaatttcaatcatt
tcCCTCCGAGAGAACTGCAATGGCTTGTAACTAACAACAAAACTTTTCCA
ATCGTTTGCCGGTTATcccaggaaaaatagcggaaaatCTCAGAAAAGTG
ACAATAAGAATGTTAGTGCGGAAAAaaggaaacttataaaaaacgacggT
ACTTTGGAGTAATAAGTAATAGCAGATAATTAAATTGCAAGTGGTGATTA
TAATAGAAAAAGATAATATCAGATTTTAGCCGCATCCTGGTAACAAAAAA
CCTTTGTTACACTAAAACTGTAACCAGGAGTAAACGGTTGCTAAGTGACA
CAGGATGCAAACATAATTTATATGGATTATCATCATAACATTTCATAATT
tgtggaaaaaaatcattttgtgTGTCTCCCTTTCTCTATTCTGGGAGAGA
CTTCAAAGAAAGCCGAGAATGTAAGCATGCGATTATTAAGGAATTAAAAG
TTTCTCAATATGTAGGTGGTTATATGGTTCGATTACTCTACCCAAGCAAT
TATCTGAATTAATTAGTGCAATTTAGCTCCCCTCCTCCTCGACCGACAAA
AAGATTCAACACTTAAGCAATCCTGATCAGGAAAATTATggggaaaatcg
ggaaaattttggggaaaattgtgaaaattttgagaaaattggggaaacaa
aaacatatccggggaaatttgattaaaattatcattggagcatttttagg
ctttaggATCCCGAGATCCTAAGGTTAAAACTCTAAAGTGTTACATTAAA
AGTCAGACTTTAAAGGATTTGTTTTTAGACaaaattcatcaattttaatt
tacaagctttgtCACATTAGATTGACatgaatgtggagcaagattggcca
gaaagGGGAAAATAAACTTacttgtttatatcagcataatataacaatat
gcagacactgtcctgatatgaaatatgtgtctgatataaaaaCGGGAACA
attatctaaaaacaaaacctatAAACTCTAAATTTCAATAAGAAGTAGGT
GATGATTATTGAATTGTCGTAAAATCCTGTCTGTAGTAAATTTTATTACC
TATAAAGATTCTCCAAGTAGCCAGTTCCCAAGCCTTTTTCTTGATACTTG
ACCGCACCCCAACCCAACCTAGACCCAACCCTACTAGGTACGATCTGGAT
ATTATTCCCTCTTGCCGTATCGAAAAGCACATATTgatgatgtcagcaaa
aattaCGCACTGGGCATGTCTCCTCTAACGAAAACTTTGTAAAGTTagtt
tccgccattatggaagcaaacgttcgatttgtgCGAGCGATCTCGTCTAC
AGATTCgaatgtttgcttccataatggcggaaattacatgaaaacatgaa
aaacctctataaGCATTACTTTGTTTTCTTTACAGCTTTACAATCTGGAT
AAGAACCCGCAACGTCAAATATTTCTGGACGAATTTTTCAGCTATAGAAG
AACTCATGGTAACTATCTATCTATTCATTCTTAAACTATAcgtatttttt
tatgagaacatccaaaaatttttgaagtcttttgatgcgcttttaacttt
ttgagtttcaagcttaaaaatgttcttagcatgttcttattttcatcata
atGTAAGTATTTGTTTTTTCCTTCGCAGGCCTTTATTGCAAGATTCCCGT
TATCGCCCGAAAACCTTTAGACGTGTTTTTACTGTATAGCATCGTTCAAA
AGTACGGTGGCTTTGAACAGGTAAGTAACTCcctccccagctggcacaca
acgttgttgtgaacgttagataaacgttaaatggacgttgtgaacgttag
ataaacgttgaaacaacgttgtgtgccagctccctcaactttcaaatttt
cactttttattacAAGGGCCGCTCTTTAATTCTGGgaataaattttcttt
gaataagacatccctgtctcagtgccccggtggaaccttttccctcagtg
gggatgaaaatttttatcgaaatcctattggggatagaaaatatattgtt
tccagctcaaaagtggggatggttttggagtctggcaatttcccagtggg
gtattttttccaccggggacgattttttgggctatttttcCATCGAAgcg
gggggtccaccgggtctgtgacgcATGAGTGTAATAAGGCATTGATTGCA
GGAAAGGTTTAATTAAGCGCAATTTCACAGTCGATAGGTAATGAGAATGA
TTAACGGCTTTTCGTTGGTTAGATGCATAAAACGTCCAGAATATTTGAAA
TCAACAGAAAAAGTTATATAGCGAAATAAAATGAGTTAAAGTCTCGAAAG
GCTATTcataaatctttaaattttccCAAGCAAGAAAAAACCTTAAGTGG
CTTCATCAATAGTTCCACATCTAGCTTCCCTCGCtagcacataacgttgt
ttcaacgtttatttaatgttcacaacgtccatataacgctaGGTGAACTT
TGGAAAAACggtgtgtgtcagctgggtctTCAGGGCTTTAAACAAACATG
CAGAATTTATTTATCTATAATATAAATCAATGTGAAACtgaatttcgaat
tttttttcttacagACGATGAAAAATAGAATGTGGAGCCAAATAGCCAGA
GAATTGGAATTGCCGAGAACGATGACCAGTGGGGCGTTCACGCTGAAATT
AAAGTATGTTTGCCAGTTTTTATACTAAGCTTGGATAATGGCAGTATTCA
AGTATTTAATTTGAATATTTCCATCATTTGAATATTCATGACGAAATTGT
CCTGAAACTTATGAGTGTGCTATGATTACCACCACCAtagaatttggcaa
ctgaacccAAACTCGCCTTGCTTTTTGAACTGTAAATTACCAAATTATCT
CCCAGCAAAGCTCCAGAATTCcacaaaaattataattgtttATTTAAAGT
ATGCATTGCATGTTTTGGTTTACTGGAGTTCCCAACCTAGGAATGACTTA
AGAATATCTCTAGCTGactttttcaccaaaaaaattaataatatcTATAT
CCATGAAATGGAAAAAGCGAAAGCTCGTATTAAACTAAAACtgatatttt
aaaaaattgctAGGTATATTCGCCTCCTGTATCAATTCGAATGTTACAAA
GTCAAGAAACAAGTTAACAAATCAATACTATTCAATGAAGCATCCATCTT
ACCAGAACAGATGTCACAGATGAATGATCACGTCCCCCAGCACCTATCAA
TCCACCAGCAACAGAATCCAGCTTATAGACAACATCAACAAACATCGAAA
TCATCTTCCAATGACCACCGAAGGGGAAATGATGATTATTATAGGGAACG
ACGTGATGAACACTCCAGAGAAAATATGATGAGAGTAAAACAAAGAGATG
ACCAATTCAATGAAAGACCAACTTTTTCCAAAACCGATCGGGTGAGTTTA
TTGTCTTTAATCGATTCCAAGAAACAGTTGAGTGTCTtaaactcgaacct
ctataactcggaTGTCTCCTTGGTATAAGTTCTATGGTTCCTTCTGTTTA
ACATTGCTTTGCATTGCATTGCTCTGCCTAAATCAACTCTGAACTCGGAC
CTCCATATCTCGaaagtctccttaactcgaacaacttTTGTGGTCAATGC
TTTATATACTTTGCTccgtaactcgaaatttctttacctcgaacaaattt
gcgttccTGTGTGTGTTCAAGTTATGTAGACTCAACTGTAATAGAAaatt
agtattttatgttttgatatatCTTTCTTTcatatgtttccaatttttca
tgCCACTGGTTCTGCCctatcaaaaacttttagatataattttctttgaa
aagtcGATTATCTAAGTCGCTCTactttttacgtcacttcttcTTTTTGT
AAATAGACGTCAATAAAAAtactaattcatgatatgcaccactgcaatgt
cttctgacattacgtcacggagccaatagctcattggttggaagtgacgt
aaaatcagtcacaatacgtcactttcaaccaatcggctattgggtggaac
ggaagacattgcaatggtgcatatcatgattAGGTGGATTTCGAAATCGG
GCCTCCCAAGTgggagtcaaggatgataaccactatGCCAATAGACGTAG
GCCCGGAGAAAGCAGGGAGACTAGGGAGACTTCAGCCTTCCagcttttga
gcaaatgagatatttttctcaaattcctagaaaatcttatctcattttga
gctttcagcctccccactttaatGGTTGTTCCGCCGTGCCTGAATCCCGC
CTGAATAGGCCTTTCTCTAACTATACATCGATAAATATTATGGTAGATAT
TCTACTTACTCTATCATTTCAATCTTATCTTATTTACAGAATCGCTATTC
ACCACACAGAGATACTGGGGGCTCATCACCATCCTCAAACAACGATATCG
TTTTACGATCATCTACTCCACCTTCTTCCGATCGCAATCATCGGGATCAC
CATCGGCGTCTTCCACCTTCGATTCATAGTCGTAAAAGAGGAGTCCATGA
AGAATTGGACGATGATACCGATACAGGAACATCGGGATCACAACCTAAAT
CGCCTAGACTGGATACACAATCTGTGTCTAGATTTTCTGTTGATGTTGTT
GAATCTTCGAGAGATAGTATTGTGTTAAAGGTCAGAATGAACAATGATGT
TTTTGAAGGTGTTCTTGAATGCACGCAGCGGGGAGATATCAGAGATTATG
CTGCTGAACAAAAAATGTAACCAAGAGAGAAAGAATATACTGCACAGAGA
CTACGAAGAAAAGTGTCATCTgagtaattcatgatattcatgacgtaata
ttttctacggaaagaccccagtTTGTGTAAGTAGTGGCAAGTTTTGAACA
ACTTTTCTCTAGCTAAAACTcaccactactggcaaaaaccggggtatttc
cgtagaaaacattaagtcataaatatcatgaatttgtaAATTGTACACCA
TGTAATAAAACTCAGACACGGTAAGAGTGATACAAGGATATTGTAAATCA
AGAAGTAAACAAGGATTCTAAAATACCATTGAGTCATCGCCAAAGTATCA
TTAAATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010894	XLOC_010894	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000326	supercontig	sc0000326:261804..269260 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0510448	3.38697e-10	0	0.086042	1.28309e-07	4.21388	5.49953	0.0067139	0.962545	4.50215	2.95546	0	0	0	0	0	0	0	0	0	0	0	0.11358	0.0203869	0.0354493	0.0507103	0

Blast

[Close]

BLAST of TCONS_00019385 vs. Swiss-Prot (Human)
Match: ARI3A (AT-rich interactive domain-containing protein 3A OS=Homo sapiens GN=ARID3A PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.467e-25
Identity = 45/107 (42.06%), Postives = 74/107 (69.16%), Query Frame = 1

Query:  628 WLYEENIKKLYNLDKNPQRQIFLDEFFSYRRTHGLYC-KIPVIARKPLDVFLLYSIVQKYGGFEQTMKNRMWSQIARELELPRTMTSGAFTLKLKYIRLLYQFECYK 945
            W YEE  K+LY LD +P+R+ FLD+ FS+ +  G    +IP++A++ LD+F+LY +V + GG  + +  ++W +I + L LP ++TS AFTL+ +Y++ LY +EC K
Sbjct:  223 WTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 329

The following BLAST results are available for this feature:

BLAST of TCONS_00019385 vs. Swiss-Prot (Human)

BLAST of TCONS_00019385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARI3A	1.467e-25	42.06	AT-rich interactive domain-containing protein 3A O...	[more]

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TCONS_00019385 (transcript) - C. hemisphaerica