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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019378 ID=TCONS_00019378|Name=TCONS_00019378|organism=Clytia hemisphaerica|type=transcript|length=1382bp
AGTAGACTCCCTTTGTTTAACACCTGCTTACAGACTCGTATATACAAAAG
tgataaattattttaagaCTTTATGAAATTAGAATAAGTTTCATTTTCAA
TGGCAAATTAGTGAGTTTAGTATTACTATGTTAAGAACCAATAAACTGAA
GCAATTCTTATTCAAAATgttatgaaattttcaccagcGTGCTAAATTTT
GAGACCTTGTTAGACAGTATAAAAGTTTTGGAGTCAATGAGAAcctaaat
atttttactttagtggAAGAGAAAACAACTGCAAATCCATTGAACTTAAA
ATTGAACTAATTGTGGTAATCGCACGCATTCTGCTGAAAATAGTTTCATT
TATTGAGTTGATCGAGTAGTTATTAAGTTCAATAGAAAACATGGCTAAAT
TGACTGGGTTAACTTGTTTGGTTGTTATTGctgcatttgttttgaaatgc
aGTACTTCTCCTGTTCCCAAAGATCTATACAAAGGTGAAGCGATCTCCAA
AAGgcAGAACATAATGCGTTGGGGAAACGGAAATTTTGCAGTTGGAAAGA
AAGAAGTTCCCGCAAACGgaaaagaaatttccaaaaggcAGAACATAATG
CGTTGGGGAAATGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCAGAAA
CGgaaaagaaatttccaaaagacaAGACATAATTCGTTGGGGAACCGGAA
ATTTTGCAGTTGGAAAGAAAGAAGTTCCCGCAAACGgaaaagaaatttcc
aaaaggcAGGACATAATTCGTTGGGGAACCGGAAATTTTGCAGTTGGAAA
GAAAGAAGTTCCCAAAAAGCAGTAGACaaacttattttaaattttcaatt
ttaagaaCAAAGGCTGATAGAGTCAAATGTTTGAATTGAATCTCACATCC
ACAGGAAATTGCCTTTAATGGGGAGCGGTTGTAGGGGTTCCTGTCAAGAA
TTTTGCTAAATCCCGGAAttctgaaaatcgaaaaaaatcaaaaaataata
acaccatCACACCGGTATGTAaaggctaaataccgtcaccgtctgattct
TTCAGTCCTTTGACTGCAGCTCCCCAAATATATAGGTCAGCATTCTTTGC
AATTCCTAGTtatcccagctggtacacaacgttgttttaacgtttgtcta
acgtccacaacgtccatttaacgttagacgaatgttgaaacaacgttgtg
taccagctgggattTGAGATTTAAAATTTCGAAGGTCTTTAAATTATTTA
ATTTGCAAGATTATAGATTGTGAGCGTAAATTTGCTAAATATAATTTAAA
ATCAAAGTTTGTTCTCCAATAAATTGTTCACTTCACTCATGTGAAATTTG
TTAATATGCAGGCCCagtggaacaaccgtaaa Run BLAST on NCBI protein sequence of TCONS_00019378-protein >TCONS_00019378-protein ID=TCONS_00019378-protein|Name=TCONS_00019378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MAKLTGLTCLVVIAAFVLKCSTSPVPKDLYKGEAISKRQNIMRWGNGNFA
VGKKEVPANGKEISKRQNIMRWGNGNFAVGKKEVPRNGKEISKRQDIIRW
GTGNFAVGKKEVPANGKEISKRQDIIRWGTGNFAVGKKEVPKKQ Run BLAST on NCBI transcript from alignment at sc0000326:167169..169592+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019378 ID=TCONS_00019378|Name=TCONS_00019378|organism=Clytia hemisphaerica|type=transcript|length=2424bp|location=Sequence derived from alignment at sc0000326:167169..169592+ (Clytia hemisphaerica)
AGTAGACTCCCTTTGTTTAACACCTGCTTACAGACTCGTATATACAAAAG
tgataaattattttaagaCTTTATGAAATTAGAATAAGTTTCATTTTCAA
TGGCAAATTAGTGAGTTTAGTATTACTATGTTAAGAACCAATAAACTGAA
GCAATTCTTATTCAAAATgttatgaaattttcaccagcGTGCTAAATTTT
GAGACCTTGTTAGACAGTATAAAAGTTTTGGAGTCAATGAGAAcctaaat
atttttactttagtggAAGAGAAAACAACTGCAAATCCATTGAACTTAAA
ATTGAACTAATTGTGGTAATCGCACGCATTCTGCTGAAAATAGTTTCATT
TATTGAGTTGATCGAGTAGTTATTAAGTTCAATAGAAAACATGGCTAAAT
TGACTGGGTTAACTTGTTTGGTTGTTATTGctgcatttgttttgaaatgc
aGTACTTCTCCTGTTCCCAAAGGTACGATATTTAAAGTATTGGGGTAGAA
TTAACTTGGGCTAAAATTGTTCAAGAGGAGTTGGGCTAGTGTTGAAAGAT
TCACCACAGCCTAGTTACAAACAGATCTCAATAAACATGTTGCTCCAAAT
AGAACCCCGGTTTGTAGGAATTATCTCTTAATAGTGAAGAACTAGGTGCT
CGGCAACCCAAAATTGGATAGAAAATTTATCtcttttttttcggaaatac
CCTCGGTTGAtggggaaaaaaagaaaatgaagagatcaatcaacattaaa
aataatctCATAAACATTATAAAGAATTAATATAAAAGAATTATAGAGAA
CATCATTTTTGGTGCACCTATATTTTCGGGTCCAGATAGTGTAAAAGTAA
CCAGATAAGCTACCccaattatgaaaatttttatttgacaaCTCCAATAT
TCTTTAACTTCCAATCTCAAATTCTCTTAAATCTTGCGAGCACTAATTTA
TTACTAAGTTATTCAGCATATGCAACCTTGCAAGGTCATCTCGAATTGCG
TCCAGCGTGGTGGATTGACCAAAATTCGGACAAACTGGGAAAGGAATTTT
TAGATTTGATTCCAGCCTCCCCTTTTAAAGAAAGTAAATACATTTGTAAA
ATTTAGACGGGCGAAGGGAGCATAAAAGCTTTTGGgaattctctcttttt
ggccgaAATCTGCCAATTCCTCTAGTAATCAGAGGCCTCATTTCTCTTTT
ACATTTGAACAAGTGCAGAAGCACGAAACTTTACGTTATGTACTGAATTA
TCGAAAGacaacttttaaattttacttgGCTCTGGAACGAGTTGAAAAAA
GAAACAACAGAAACTTGAAAATCAGAAATAGACACTTACATAATTTTGTT
GAGTTTTTGCAGTGTGACTATTGTCAACTAACAGTAACTCAGCCAAATTC
TTATTATattagttttttacttttttccagATCTATACAAAGGTGAAGCG
ATCTCCAAAAGGCAAAACATAATGCGTTGGGGAGATGGAAATTTTGCAGT
TGGAAAGAAGGAAGTTCCCGCAAACGgaaaagaaatttccaaaaggcAGA
ACATAATGCGTTGGGGAAACGGAAATTTTGCAGTTGGAAAGAAAGAAGTT
CCCGCAAACGgaaaagaaatttccaaaaggcAGAACATAATGCGTTGGGG
AAATGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCAGAAACGgaaaag
aaatttccaaaagacaAGACATAATTCGTTGGGGAACCGGAAATTTTGCA
GTTGGAAAGAAAGAAGTTCCCGCAAACGgaaaagaaatttccaaaaggcA
GGACATAATTCGTTGGGGAACCGGAAATTTTGCAGTTGGAAAGAAAGAAG
TTCCCAAAAAGCAGTAGACaaacttattttaaattttcaattttaagaaC
AAAGGCTGATAGAGTCAAATGTTTGAATTGAATCTCACATCCACAGGAAA
TTGCCTTTAATGGGGAGCGGTTGTAGGGGTTCCTGTCAAGAATTTTGCTA
AATCCCGGAAttctgaaaatcgaaaaaaatcaaaaaataataacaccatC
ACACCGGTATGTAaaggctaaataccgtcaccgtctgattctTTCAGTCC
TTTGACTGCAGCTCCCCAAATATATAGGTCAGCATTCTTTGCAATTCCTA
GTtatcccagctggtacacaacgttgttttaacgtttgtctaacgtccac
aacgtccatttaacgttagacgaatgttgaaacaacgttgtgtaccagct
gggattTGAGATTTAAAATTTCGAAGGTCTTTAAATTATTTAATTTGCAA
GATTATAGATTGTGAGCGTAAATTTGCTAAATATAATTTAAAATCAAAGT
TTGTTCTCCAATAAATTGTTCACTTCACTCATGTGAAATTTGTTAATATG
CAGGCCCagtggaacaaccgtaaa Coding sequence (CDS) from alignment at sc0000326:167169..169592+ >TCONS_00019378 ID=TCONS_00019378|Name=TCONS_00019378|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0000326:167169..169592+ (Clytia hemisphaerica)
ATGGCTAAATTGACTGGGTTAACTTGTTTGGTTGTTATTGctgcatttgt
tttgaaatgcaGTACTTCTCCTGTTCCCAAAGATCTATACAAAGGTGAAG
CGATCTCCAAAAGgcAGAACATAATGCGTTGGGGAAACGGAAATTTTGCA
GTTGGAAAGAAAGAAGTTCCCGCAAACGgaaaagaaatttccaaaaggcA
GAACATAATGCGTTGGGGAAATGGAAATTTTGCAGTTGGAAAGAAAGAAG
TTCCCAGAAACGgaaaagaaatttccaaaagacaAGACATAATTCGTTGG
GGAACCGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCGCAAACGgaaa
agaaatttccaaaaggcAGGACATAATTCGTTGGGGAACCGGAAATTTTG
CAGTTGGAAAGAAAGAAGTTCCCAAAAAGCAGTAGATGGCTAAATTGACT
GGGTTAACTTGTTTGGTTGTTATTGctgcatttgttttgaaatgcaGTAC
TTCTCCTGTTCCCAAAGATCTATACAAAGGTGAAGCGATCTCCAAAAGgc
AGAACATAATGCGTTGGGGAAACGGAAATTTTGCAGTTGGAAAGAAAGAA
GTTCCCGCAAACGgaaaagaaatttccaaaaggcAGAACATAATGCGTTG
GGGAAATGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCAGAAACGgaa
aagaaatttccaaaagacaAGACATAATTCGTTGGGGAACCGGAAATTTT
GCAGTTGGAAAGAAAGAAGTTCCCGCAAACGgaaaagaaatttccaaaag
gcAGGACATAATTCGTTGGGGAACCGGAAATTTTGCAGTTGGAAAGAAAG
AAGTTCCCAAAAAGCAGTAGATGGCTAAATTGACTGGGTTAACTTGTTTG
GTTGTTATTGctgcatttgttttgaaatgcaGTACTTCTCCTGTTCCCAA
AGATCTATACAAAGGTGAAGCGATCTCCAAAAGgcAGAACATAATGCGTT
GGGGAAACGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCGCAAACGga
aaagaaatttccaaaaggcAGAACATAATGCGTTGGGGAAATGGAAATTT
TGCAGTTGGAAAGAAAGAAGTTCCCAGAAACGgaaaagaaatttccaaaa
gacaAGACATAATTCGTTGGGGAACCGGAAATTTTGCAGTTGGAAAGAAA
GAAGTTCCCGCAAACGgaaaagaaatttccaaaaggcAGGACATAATTCG
TTGGGGAACCGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCAAAAAGC
AGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019378-exon-sc0000326-1491911889:167169..167640 | TCONS_00019378-exon-sc0000326-1491911889:167169..167640 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1510915933:167169..167640 | TCONS_00019378-exon-sc0000326-1510915933:167169..167640 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1575043694:167169..167640 | TCONS_00019378-exon-sc0000326-1575043694:167169..167640 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1491911889:168599..168629 | TCONS_00019378-exon-sc0000326-1491911889:168599..168629 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1510915933:168599..168629 | TCONS_00019378-exon-sc0000326-1510915933:168599..168629 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1575043694:168599..168629 | TCONS_00019378-exon-sc0000326-1575043694:168599..168629 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1491911889:168714..169592 | TCONS_00019378-exon-sc0000326-1491911889:168714..169592 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1510915933:168714..169592 | TCONS_00019378-exon-sc0000326-1510915933:168714..169592 | Clytia hemisphaerica | exon |
| TCONS_00019378-exon-sc0000326-1575043694:168714..169592 | TCONS_00019378-exon-sc0000326-1575043694:168714..169592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:167169..169592 + |
Blast
The following BLAST results are available for this feature:
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