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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019371 ID=TCONS_00019371|Name=TCONS_00019371|organism=Clytia hemisphaerica|type=transcript|length=397bp
cagcaAAAGGTCAAATTACAAATGCTAACGAATTAACAGAATGTTGGAAA
TGTTCTGGCAGTGAGGACTGCGGTGATCGAGATTCTTGTCTCGCTGAGCA
TGATCGGTGTTTGAAACTGAAATACGAACATGACGGTGGTTTCGTGAATG
AAGCTAGATGCTCCAAACGAACTGAATGCGATACAGAAGGTGGCAAAATG
GTGTTATGTGACAAGAAGAAGAAGTGCAAGATTTCCGCTTGCTGCAGAGG
TGACATGTGCAACTCACCCGCTGTCACAACCAAATTCAATGCCAGCCTTT
TGGCtcttgtcgtcatggttacatTCTATGTTTTTTTTGGACGATAATTC
ATCTATTTCACTATTGTCATATTTAAACACGATTTATGTCGCTAAAA Run BLAST on NCBI protein sequence of TCONS_00019371-protein >TCONS_00019371-protein ID=TCONS_00019371-protein|Name=TCONS_00019371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
AKGQITNANELTECWKCSGSEDCGDRDSCLAEHDRCLKLKYEHDGGFVNE
ARCSKRTECDTEGGKMVLCDKKKKCKISACCRGDMCNSPAVTTKFNASLL
ALVVMVTFYVFFGR Run BLAST on NCBI transcript from alignment at sc0000326:76280..82624+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019371 ID=TCONS_00019371|Name=TCONS_00019371|organism=Clytia hemisphaerica|type=transcript|length=6345bp|location=Sequence derived from alignment at sc0000326:76280..82624+ (Clytia hemisphaerica)
cagcaAAAGGTCAAATTACAAATGCTAACGAATTAACAGAATGTTGGAAA
TGTTCTGGCAGTGAGGACTGCGGTGATCGAGATTCTTGTCTCGCTGAGCA
TGATCGGTGTTTGAAACTGAAATACGAGTAAGTCTTTTTGTCTCGCTGAG
CATGATCGGTGTATGAAACTGAAATACGAGTAAGTCTTTTTGTCTCGCTG
AGCACGATCGGTGCTTGAAACTGAAATACGAGTAAGTCTTTTTGTCTCGC
TGAGCATGATCGGTGCTTGAAACTGAAATACAAGTAAGTGTTTTTGTCTC
GCTGAGCACGATCGGTGTATGAAACTGAAATACGAGTAAGTCTTTTGGTC
TCGCTGAGCACGATCGGTGTATGAAACTGAAATACGAGTAAGTGTTTTTG
TCTCGCTGAACAGGATCGATGCTTGAAACTAAAATACGAATAAGTCTTTT
TGTCTCGCTGAGCACGATCAGTGCTTGAAACTGAAATACAAGTAAGTGTT
TTTGTCTCGCTGAGCATGATCGATGCTTGAAACTGAAATACGAGTAAATC
TTTTTGTCTCGTTGAGCATGATCGATGCTTGAAACTGAAATACGAGTGAG
TCTTTTTGTCTCGCTGAGCATGCGCGATCAATGCTTAAAACTGAAATACG
CGTAAGTCTTTCTGTCTCGCTGAGCATGATCGGTGTTTGAAACTGAACTA
CGAGTAAGTCTTTTTGTCTCGCTGAGCACGATTTCCTCGTCCTTCATGGC
AGCCTTCATTAAATCAATTTCTAGCTTTTCTCCTAAAAGCTGTTGAATTT
TCACAGTCTTGTAGAATAATtaatacccagctggcacacaacgttgtttt
aacgttcatataacgttatatggacgttgggaacattagatggacgttga
aacaacgttgggtatatatatttttactgTCATATTCTTTTTCAGACATG
ACGGTGGTTTCGTGAATGAAGCTAGATGCTCCAAACGAACTGAATGCGAT
ACAGAAGGTGGCAAAATGGTGTTATGTGACAAGAAGAAGAAGTGCAAGGT
AAGAAGGTATTAGAGGGAAAATTAcaggggggttgtacttttacggtgtg
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atcatactttatgcgccttaaattgcgcccaggaccaactttactgagat
aattttaaaatactttcaatttttttcgctcgcttcgctcgcaatacaat
ttaattggtaacttctttgcaatctagcttatttataactttttttgTGT
ATAtgatagcattattaaatgaaaatctaactgcgccccaagaccaattt
gctgacaacaatattgaaatcatagaacatcaattttttcgctcgcttcg
ctcgcattttacattgtttctttaactttttttttcgctctagcaagtgt
caaatttgtctatttttatttagtgatttagggtgtcttggcagtcgatt
tttaaaatttttctagtcggccccaaccatggtgaaGCCtgcttttccat
tcatcaaagatatatctactcttctccactaaatatttccttcctcacaA
TGcgtaggcaaatgaattagtaaaagtttagaaactggtgggtgggggca
ccactttggaaaattgaagggggcgccatttaaaaaagaattgactttgg
cccctccagaaaaattttcccacaacgccactgtaGAAGGTGGGAAAATG
GTGTTATGTGACAAGAAGAAGAAGTGCGAGGTAAGAAGCTTTTAGAAGGA
AAATTACAGTGTGTCTTAAAAAGAGTAGAGAAATTTTTATATcaagtaaa
atcctcataatCTATACGAACGAAGTTTCACGACTGTATACTGAATATTT
CAATCTCAAGaacctattcaatcatctttGGAATTGAATACCTATTGTTT
AAGCAGGAAATTTAAATCTTATAATTCAAACATTCTAAGCCCAGTTAAAA
TGATGACTTTTGATTTGACTTTGTAAAAagatttgtttgctttttttacg
ctgcatataggaacacgaggctaaattttgatcaaaatctAAGAACAAAT
TTTGGTCTAATCCGACCAGTCAATTTAATCAATTCAGGCCTAAAAGAATA
TGAaataataagaacagccgagcttCGGCTGAATTAGAGTGTGCGGGAAA
CAACTTTATTTATCATccctcccagctggcacacaacgttgtttcaacgt
tcatctaacgttatatggacgttggataaacgttgaaacaacgttgtgtg
ccagctggccTGTATCAAAGCCTCGCCTCTCACAAAAGCCCAACGGCAAA
ATATAGTGTTTACCTTATTTGCATTAAGCTTCTTCATTTTATTCCGCTGC
TAAAAAAGAGTTTGGACAGATCAATAAGACAGGGGCGTTTAATAAAATGT
TTAAGAGTTtaggtaatgttctagttggtgagttggtgagttgctagttt
cgagttgagaagttcgtaaaactttacggcgaccgaaattttctaattta
aactaatgtagcccaaaagtacaaatttcaaattagccagccagtaccaa
acatattattgactttaagatcatgaaaatggtaaggtgctggctagcaa
agccaaaatactcAGTTCTGTTATGTCATTGTCATAATGCTGACAACATG
acacgttcttgtaaaaatattgacaaaatctttaaataaaaTGATTGTCA
AActaattccccaaaaaatattgatcatactgcaagtgatgcttattgta
taaaatgatataagttgacagtcatcttagcctcaaaaaattcgtAGAGA
TAGCTTGTAGAGCtggaaaaataatgacactttcttttgtcattttatca
ttggaattgacactttttaataaaaattttgatcacattataaaatacaa
tggttTTAAAGTCACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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tatatgtgttatatattactctcatattacatttactttcaaaatcgtac
ttttgatgtatgttattctttttcggtagccggtaattttttaactctcc
aactcgaaactagcaactccctaactcgcgaatagaatagtttccaaact
cAATGTTTAACATGGTTTCTCGCAATAGATTTCCGCTTGCTGCAGAGGTG
ACATGTGCAACTCACCCGCTGTCACAACCAAATTCAATGCCAGCCTTTTG
GCtcttgtcgtcatggttacatTCTATGTTTTTTTTGGACGATAATTCAT
CTATTTCACTATTGTCATATTTAAACACGATTTATGTCGCTAAAA Coding sequence (CDS) from alignment at sc0000326:76280..82624+ >TCONS_00019371 ID=TCONS_00019371|Name=TCONS_00019371|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000326:76280..82624+ (Clytia hemisphaerica)
gcaAAAGGTCAAATTACAAATGCTAACGAATTAACAGAATGTTGGAAATG
TTCTGGCAGTGAGGACTGCGGTGATCGAGATTCTTGTCTCGCTGAGCATG
ATCGGTGTTTGAAACTGAAATACGAACATGACGGTGGTTTCGTGAATGAA
GCTAGATGCTCCAAACGAACTGAATGCGATACAGAAGGTGGCAAAATGGT
GTTATGTGACAAGAAGAAGAAGTGCAAGATTTCCGCTTGCTGCAGAGGTG
ACATGTGCAACTCACCCGCTGTCACAACCAAATTCAATGCCAGCCTTTTG
GCtcttgtcgtcatggttacatTCTATGTTTTTTTTGGACGATAAgcaAA
AGGTCAAATTACAAATGCTAACGAATTAACAGAATGTTGGAAATGTTCTG
GCAGTGAGGACTGCGGTGATCGAGATTCTTGTCTCGCTGAGCATGATCGG
TGTTTGAAACTGAAATACGAACATGACGGTGGTTTCGTGAATGAAGCTAG
ATGCTCCAAACGAACTGAATGCGATACAGAAGGTGGCAAAATGGTGTTAT
GTGACAAGAAGAAGAAGTGCAAGATTTCCGCTTGCTGCAGAGGTGACATG
TGCAACTCACCCGCTGTCACAACCAAATTCAATGCCAGCCTTTTGGCtct
tgtcgtcatggttacatTCTATGTTTTTTTTGGACGATAAgcaAAAGGTC
AAATTACAAATGCTAACGAATTAACAGAATGTTGGAAATGTTCTGGCAGT
GAGGACTGCGGTGATCGAGATTCTTGTCTCGCTGAGCATGATCGGTGTTT
GAAACTGAAATACGAACATGACGGTGGTTTCGTGAATGAAGCTAGATGCT
CCAAACGAACTGAATGCGATACAGAAGGTGGCAAAATGGTGTTATGTGAC
AAGAAGAAGAAGTGCAAGATTTCCGCTTGCTGCAGAGGTGACATGTGCAA
CTCACCCGCTGTCACAACCAAATTCAATGCCAGCCTTTTGGCtcttgtcg
tcatggttacatTCTATGTTTTTTTTGGACGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019371-exon-sc0000326-1491911889:76280..76406 | TCONS_00019371-exon-sc0000326-1491911889:76280..76406 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1510915933:76280..76406 | TCONS_00019371-exon-sc0000326-1510915933:76280..76406 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1575043694:76280..76406 | TCONS_00019371-exon-sc0000326-1575043694:76280..76406 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1491911889:77225..77327 | TCONS_00019371-exon-sc0000326-1491911889:77225..77327 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1510915933:77225..77327 | TCONS_00019371-exon-sc0000326-1510915933:77225..77327 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1575043694:77225..77327 | TCONS_00019371-exon-sc0000326-1575043694:77225..77327 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1491911889:82458..82624 | TCONS_00019371-exon-sc0000326-1491911889:82458..82624 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1510915933:82458..82624 | TCONS_00019371-exon-sc0000326-1510915933:82458..82624 | Clytia hemisphaerica | exon |
| TCONS_00019371-exon-sc0000326-1575043694:82458..82624 | TCONS_00019371-exon-sc0000326-1575043694:82458..82624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:76280..82624 + |
Blast
The following BLAST results are available for this feature:
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