TCONS_00019369 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019369
Unique Name	TCONS_00019369
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	309

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000326:71930..77327+

transcript sequence

>TCONS_00019369 ID=TCONS_00019369|Name=TCONS_00019369|organism=Clytia hemisphaerica|type=transcript|length=309bp
tagaaatttactcTTAaaagaatggaaaattttcatatttctctTATTGC
ACTTGTCCTGACGACTCTATCAATTAACACAGcaAAAGGTCAAATTACAA
ATGCTAACGAATTAACAGAATGTTGGAAATGTTCTGGCAGTGAGGACTGC
GGTGATCGAGATTCTTGTCTCGCTGAGCATGATCGGTGCTTGAAACTGAA
ATACGAACATGACGGTGGTTTCGTGAATGAAGCTAGATGCTCCAAACGAA
CTGAATGCGATACAGAAGGTGGCAAAATGGTGTTATGTGACAAGAAGAAG
AAGTGCAAG

Run BLAST on NCBI

transcript from alignment at sc0000326:71930..77327+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019369 ID=TCONS_00019369|Name=TCONS_00019369|organism=Clytia hemisphaerica|type=transcript|length=5398bp|location=Sequence derived from alignment at sc0000326:71930..77327+ (Clytia hemisphaerica)
tagaaatttactcTTAaaagaatggaaaattttcatatttctctTATTGC
ACTTGTCCTGACGACTCTATCAATTAACACAGGTTTGTAATTTTTGGTTT
GTCAAAGAATTTAAATTTAAGTCTTAGTGGTGCCTTAAGAAAACTAATTT
TGATGATCAGAAAAAAAGCAAAGTCTAAAAGAaagcaaactttttttttt
tggaggaAAATCTAATTTTGGTAAATAGCAGGGTCAGTTGGTTTCTTTTA
TCCTAGATAtgagggggggggtttcagggggtacccgattccgcaattcc
gccaattttttctccaatttccgtcaaaccgtcttaaattgaaccaaaat
tccgtcaccgaaaattcctttgaaattcaatatttttgtcgaaaattccg
caaatttagaatatcttttaccaattccaaaattgcgcagttttttttgc
taaattccgtttttccgcactaaaattgtctaattttccgtctccgtccg
agaacccaatttccgtaattccgtctaaattttcgccaaattccgccact
ccgtccgaaaaaagggccgattccgctcctccgccaaacgTGAACCCCCC
CAATATGAGTGTTAAAAACAACGACTGGGGGTTAGTTTAGAAAAGCATAG
AAAAGGTTGATTTCGGTGGGGACTAATTTTACGATTAGacttaataaaaa
ttttagtaAGAGTCGAAAATGTACTGATTGGATATTGAATAAATTTGATC
CTAGCTCTTTAGATACTAAATGGCCGTTGGTACAGGACCTTATTTCTata
acccccggggggggggcactcgatctgaaaacgaccatacgttcggccca
aaatttggcttctaaaatcggacccttacagtgcagtgaatttgcatgaa
aaatcatacccttacagtgcactttttcaaattttttcgcccgtaagggc
gacagtttttacaattttgcaagaaaatgtggaatttttcctccaaaatt
gaccaattttgtgccaattttaccaaaaaatcggccttttatcacaattt
gctacccttacagtgcagtttagtgcagttttgtaatttcctacccttac
agtgcactagctgaactatgaaaaatctacccttaagggccgaacgtctg
gtaggtcatttaccttgagtgccccccccccgggccatAACCTTGACATT
AAACGGAAAGGGTCTATTTTCTCACACTCAGAAGTAAGAAAATAGAGGAA
AGAGCGGTAGTGGAGtctccccagctggcacacaacgtttttttcgacgt
ttatataacgttcataacgtccatataacgttagataaacgttgaaacaa
cgtcgtgtgccagctgggtccaTATCTGAAACATCTCTGAAAAGTGCGTA
ATGCAGTAATATTACAATACATGTAATGTAATAGAGNttaaagagaatgc
aaatcgctctagggagaccaggctgtaaaccagaacataaaatataaaaa
actagactgtgaaatagtttacagcctgcaTATCCAGGCTATCCTTCATC
aagatcaacattttcttcaaggtgaactctattgcttaatactttcctcc
aaaattctccagcgactttatgtctacaaattgggtctgaaattgtgtgt
gcttatacataactttttattttctggctggagaaaatatcttttcaaaa
caaaatttaatggatgacaaaattaaacgcaaacttatttcgtggagcta
aattttattttattctcgtatatcagaaggctagaaatcttcgatgctga
tagtaagaatgttcagagcaaacttgagttctactaaaaagtcgtatttc
atcgggcgagcctagaatttcttttNNNNNNNNNtagaatttcttttgat
ttattacataaaagaaatcaaaagactttaacgaccaattaccgacaaat
tcatctcctgtctttctttatacctctatgcctCAAGGTAATTCAAATTC
CCTCAAATGCTGAATTGTGATAAATAGGAAGAAAAATAGAAGAATAACGA
AATCCTCTGTTTTAAAAGTCTTTATTGAAATGGCTTTGCAATGTAATACA
TGTAATGTAATAGTGCGTAATACAGTAACATAATAATACatgtaatctca
tggttgattgaaattcNtatatcgtgcatttttaatgagctcttttgttg
ataggtgaaatcttattggctaacttaagtgttggaaataagatgagacg
agattcattgtttttgacattggtgtaagaaaatatttggattaaaaaaa
ggcctgtaaactttgcaatccttcatctagcctggatatccaagctcaaa
atttaagaaaaaacaaaatttatctcaacatacaaagttcttaaattata
gagcttggtctccctagagaatgaaagtgaaaacccatgtttcctagcca
acccagggcagcaaaacagaaattaataaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtcagaattgttagaatttcaatccaaaccatgagattaacc
aggaatcccatgcttgttttcgtgaaattctggataaattaccctcggtc
aaatttcgaaatgtttcaaatttccctcgttgcactcgggaaatttcaaa
aaatttcaaaattgacctcggaAAATTTATCTcgaatttccctcataacc
atgagattactagtactaatttgATAATgcgtaatacagtaatataacAT
GTAATGTATTCTCTAAATCGTCTCATCAACTCGAATATGTTTTTTAGTCC
CTTTATTTAACAATCTTTAACCTTACTCGGAAATTCAAGATTTCCTGGAA
TCGAGCCGAGTTGTGTTTTCCATGAATATTTCAGCATATAAAGACTtcac
tttctatttctttaaatttaagTTGAATTTTATatgcttttttgattttt
cagcaAAAGGTCAAATTACAAATGCTAACGAATTAACAGAATGTTGGAAA
TGTTCTGGCAGTGAGGACTGCGGTGATCGAGATTCTTGTCTCGCTGAGCA
TGATCGGTGTTTGAAACTGAAATACGAGTAAGTCTTTTTGTCTCGCTGAG
CATGATCGGTGTATGAAACTGAAATACGAGTAAGTCTTTTTGTCTCGCTG
AGCACGATCGGTGCTTGAAACTGAAATACGAGTAAGTCTTTTTGTCTCGC
TGAGCATGATCGGTGCTTGAAACTGAAATACAAGTAAGTGTTTTTGTCTC
GCTGAGCACGATCGGTGTATGAAACTGAAATACGAGTAAGTCTTTTGGTC
TCGCTGAGCACGATCGGTGTATGAAACTGAAATACGAGTAAGTGTTTTTG
TCTCGCTGAACAGGATCGATGCTTGAAACTAAAATACGAATAAGTCTTTT
TGTCTCGCTGAGCACGATCAGTGCTTGAAACTGAAATACAAGTAAGTGTT
TTTGTCTCGCTGAGCATGATCGATGCTTGAAACTGAAATACGAGTAAATC
TTTTTGTCTCGTTGAGCATGATCGATGCTTGAAACTGAAATACGAGTGAG
TCTTTTTGTCTCGCTGAGCATGCGCGATCAATGCTTAAAACTGAAATACG
CGTAAGTCTTTCTGTCTCGCTGAGCATGATCGGTGTTTGAAACTGAACTA
CGAGTAAGTCTTTTTGTCTCGCTGAGCACGATTTCCTCGTCCTTCATGGC
AGCCTTCATTAAATCAATTTCTAGCTTTTCTCCTAAAAGCTGTTGAATTT
TCACAGTCTTGTAGAATAATtaatacccagctggcacacaacgttgtttt
aacgttcatataacgttatatggacgttgggaacattagatggacgttga
aacaacgttgggtatatatatttttactgTCATATTCTTTTTCAGACATG
ACGGTGGTTTCGTGAATGAAGCTAGATGCTCCAAACGAACTGAATGCGAT
ACAGAAGGTGGCAAAATGGTGTTATGTGACAAGAAGAAGAAGTGCAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010888	XLOC_010888	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019369-exon-sc0000326-1491911889:71930..72011	TCONS_00019369-exon-sc0000326-1491911889:71930..72011	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1510915933:71930..72011	TCONS_00019369-exon-sc0000326-1510915933:71930..72011	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1575043694:71930..72011	TCONS_00019369-exon-sc0000326-1575043694:71930..72011	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1491911889:76283..76387	TCONS_00019369-exon-sc0000326-1491911889:76283..76387	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1510915933:76283..76387	TCONS_00019369-exon-sc0000326-1510915933:76283..76387	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1575043694:76283..76387	TCONS_00019369-exon-sc0000326-1575043694:76283..76387	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1491911889:76804..76822	TCONS_00019369-exon-sc0000326-1491911889:76804..76822	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1510915933:76804..76822	TCONS_00019369-exon-sc0000326-1510915933:76804..76822	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1575043694:76804..76822	TCONS_00019369-exon-sc0000326-1575043694:76804..76822	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1491911889:77225..77327	TCONS_00019369-exon-sc0000326-1491911889:77225..77327	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1510915933:77225..77327	TCONS_00019369-exon-sc0000326-1510915933:77225..77327	Clytia hemisphaerica	exon
TCONS_00019369-exon-sc0000326-1575043694:77225..77327	TCONS_00019369-exon-sc0000326-1575043694:77225..77327	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000326	supercontig	sc0000326:71930..77327 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.401501	0	11.3705	8.6383	19.838	15.9856	10.2712	19.0699	23.9494	23.5885	53.1998	46.942	21.8184	10.84	12.8768	8.87549	72.4881	59.8578	16.723	12.7282	4.55615	7.7882	3.44821	3.53941	1.18334	1.31496	0.393583	1.86979

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00019369 vs. Swiss-Prot (Human)

BLAST of TCONS_00019369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00019369 (transcript) - C. hemisphaerica