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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019368 ID=TCONS_00019368|Name=TCONS_00019368|organism=Clytia hemisphaerica|type=transcript|length=1390bp
CTTTGTACCATATATGGTTAAAATCATTACGTAATTAAAATTGAAGGTTT
TAATTGGTTGAAATAGAGTCTGAGTACGATTCTTTGCGGGGGTTTTTATC
AACATGGAAAATTTCCCCCGCACGTTTCTTCCTTTTCGAATCAAACTCAC
TCACATGTGCACGTTCTCGTCGAAATCACTTCAAAATGCCAAAGAAAACA
GAAGCAAACCAAGACTCCTTTAAAAAGCAGAAGACATCAGCAGACCCTAA
GGAGAAAAGTGAAGatCTCCCTGGAACtagcaaaaacaaagaaaatgatc
CAAAGGATGACAGCAAACCAAGTGAAGatctATACTTTGTTCACAATGTT
ACACCACTGAAAAGTTATGgaaatcagcaaaaagaatACTTCAACTGTGT
ATTGCAATCTCCAGTTTCCGCTCGTAAAGCTGTGTGCTGGTCACCAAAGA
AGCATAAACTTATGACCGATGTTTCCGAATCTCTATCACCTGTAAAGATA
ACAAAAGTCAATTCAGATATCAACAACAATGATGTTATTGTTAGAGATGA
TGCTGAAATAATCATTTCGAGGGCACCTTCTAGCTTCTCTCCAGATCCTC
GTCTTTCTGCTACTGCCATCAACACTGTCACCAACTTATTTTCCCTGGCC
CCAAAGCAGTTGGTACGCCAATTGAAGTGTCATGTGACTAGAGTCTTTCA
AACCACTGACCACAAGACTAGATCAAATTCGCTCATCCGACGCCAAGAAG
TTAGTGTAAGTGACAATCTCAATTCTGTCAAACTCATTTTGTATGGCGAT
GATGCAGAAACTCTATCAGCTGGTAAGTCATACATCTTGAAAAATGTACG
TCTCAATTCTTACAACAACACCATATATGTCAACACCACCTCTGAAAGGC
CATTCACATTTGAGAAATTGAAAAGATTGATGCAGTTGATGTAAGTGCGT
CTTCAGAAATTACCATTTTGGCTAAAATAATCGGGATTGGGTCGATTAAC
ATCCACTACTTTTGCATCATGTGCAATTCCAAGCTTGCATTCCCACAAGC
TGAACTTGACGATGAAGTAAAGTGCAGCAAAGAATCGTGTCCAGGCCGAA
TGCTCCTCAGCTCGTGTCGCGCAAGTTGCAATTTGAGTCTTGTAGTtagt
gacattgcaaacaataACAGATCAACCATATTTTTTAGTACAGATAAAGT
GATgctgttgaaaaaaattattgattttcCTATGGTAGAGAATGAAATTG
CAAAAATGTTACTCCGTTTTCCTGATATTCTACAGGTAACTTTTGACTTA
GTTACCAAGTCTGTTTTGAACATTGTAAAAGTTTAAGTTTGACAACATTT
TtcaagttgatatttttttatcttagGTTTTATATCTTAC Run BLAST on NCBI transcript from alignment at sc0000326:29537..32485+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019368 ID=TCONS_00019368|Name=TCONS_00019368|organism=Clytia hemisphaerica|type=transcript|length=2949bp|location=Sequence derived from alignment at sc0000326:29537..32485+ (Clytia hemisphaerica)
CTTTGTACCATATATGGTTAAAATCATTACGTAATTAAAATTGAAGGTTT
TAATTGGTTGAAATAGAGTCTGAGTACGATTCTTTGCGGGGGTTTTTATC
AACATGGAAAATTTCCCCCGCACGTTTCTTCCTTTTCGAATCAAACTCAC
TCACATGTGCACGTTCTCGTCGAAATCACTTCAAAATGCCAAAGAAAACA
GAAGCAAACCAAGGTAAACCTATCTGATACAAAAAACCTTCACTTCCAAT
GTTTTCATTCTTCCTGTTTTGAAATAATGAGTTCTTTTAGCCACGAGCTT
CTAGTGAATGACCCCCATTCTGGTTGCTATCATCTTATCTACCCTTTTTC
TCCCCcaatttaaattgattttgacagACATCAGGAAAAGAAGTCTTCCC
TCCTCTACTCAGTCCTTGACATAATGTTTCTGTTTTCTAGACTCCTTTAA
AAAGCAGAAGACATCAGCAGACCCTAAGGAGAAAAGTGAAGGTAAAAATA
TAGCAACAGATCAAAGGATAATCATTCTATGATTATGGATTTCGAAGGGT
GAGGCTGTTGGGGTTTTGGATTAAAGGAAAATATTGGGATATCAGTatca
agaaagaaagaaagtatTCTGATTTTACAagacttctttgcaatcttttg
AGGGTAGATTTACTAGgcatttttttttcgacttaGTTCTCAAACATCAG
ACATCAGGTGGATGTTCAGACCCCACTCGCTCTGTCATTAGAAGATTAAG
AACCCCTCTGTACACAATAGAATaactattttatttcttttagatCTCCC
TGGAACtagcaaaaacaaagaaaatgatcCAAAGGATGACAGCAAACCAA
GTGAAGGTAAAGCTACTACTTGTTAACATTATTTATGTGTGACTGCCATG
AAGGAAGATGTTCTTAGGTGTAGTTAAGCTTTCACTTTGAAAAAGAATAA
AGtgtttacaagctttttttataacaaccagtaaattttggttcAGGCTG
GgctattcttaatttttcgaaatttttaggCTCATTACCATGTTCTTAAT
atgcttagtttctttactcaATAACTTTAAATGGgtttaaaatcagtact
ttctcagtaatttttaaaatctgagGCTGTGATTGTTAATTATTAAtcag
ggttcagacagaccctggaaaacctggaaatatgataaattttcagaaaa
atcagggaaactcagggaaacccagggaaaaaactgtttttccccagtct
gctcagggaacctcagggaattttattttttgaagaatgaatggaaaaac
agatttaaaagtttttttagttttaaagtgtatattcatatgcagtattt
aatttttacatTAGGTTTACCATTTGATTTGTGTGCCTTTTGTTTAGAGA
TACATCTCTTTTGACTCTGcttagtttttatggtttgcttgatactcagg
gaaaaaatagctaaaatgaggaattactcagggaaaaaacctttgaaaat
tgattaaaattcagggaattttattttcgaaggtctgtctgaaccctgta
atgattcttaatttgttcattaggttttgtccaaatttcagcTTCGTGTT
CTTCTAAAAGTgtactttttaaaaaagaattttaagaaaatgaaattttt
ttacaaacagGGAATAACTAAGAACTgagaagatttttttcttgtgaaat
tctattttgatgaaaacaaaaatttacataGAAGTTGACAGATTTAATTG
TTGCAAATTAATAGGCACTGTAATTTAATTGGCACCGTGATGTCATGCTA
TCATATGTCTtgcttaattaaaaaaaaattacagagTAGTTAAAAATGAC
ACCAATGAGTTAATTacgaattttttcatttttcagatctATACTTTGTT
CACAATGTTACACCACTGAAAAGTTATGgaaatcagcaaaaagaatACTT
CAACTGTGTATTGCAATCTCCAGTTTCCGCTCGTAAAGCTGTGTGCTGGT
CACCAAAGAAGCATAAACTTATGACCGATGTTTCCGAATCTCTATCACCT
GTAAAGATAACAAAAGTCAATTCAGATATCAACAACAATGATGTTATTGT
TAGAGATGATGCTGAAATAATCATTTCGAGGGCACCTTCTAGCTTCTCTC
CAGATCCTCGTCTTTCTGCTACTGCCATCAACACTGTCACCAACTTATTT
TCCCTGGCCCCAAAGCAGTTGGTACGCCAATTGAAGTGTCATGTGACTAG
AGTCTTTCAAACCACTGACCACAAGACTAGATCAAATTCGCTCATCCGAC
GCCAAGAAGTTAGTGTAAGTGACAATCTCAATTCTGTCAAACTCATTTTG
TATGGCGATGATGCAGAAACTCTATCAGCTGGTAAGTCATACATCTTGAA
AAATGTACGTCTCAATTCTTACAACAACACCATATATGTCAACACCACCT
CTGAAAGGCCATTCACATTTGAGAAATTGAAAAGATTGATGCAGTTGATG
TAAGTGCGTCTTCAGAAATTACCATTTTGGCTAAAATAATCGGGATTGGG
TCGATTAACATCCACTACTTTTGCATCATGTGCAATTCCAAGCTTGCATT
CCCACAAGCTGAACTTGACGATGAAGTAAAGTGCAGCAAAGAATCGTGTC
CAGGCCGAATGCTCCTCAGCTCGTGTCGCGCAAGTTGCAATTTGAGTCTT
GTAGTtagtgacattgcaaacaataACAGATCAACCATATTTTTTAGTAC
AGATAAAGTGATgctgttgaaaaaaattattgattttcCTATGGTAGAGA
ATGAAATTGCAAAAATGTTACTCCGTTTTCCTGATATTCTACAGGTAACT
TTTGACTTAGTTACCAAGTCTGTTTTGAACATTGTAAAAGTTTAAGTTTG
ACAACATTTTtcaagttgatatttttttatcttagGTTTTATATCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019368-exon-sc0000326-1491911889:29537..29749 | TCONS_00019368-exon-sc0000326-1491911889:29537..29749 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1510915933:29537..29749 | TCONS_00019368-exon-sc0000326-1510915933:29537..29749 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1575043694:29537..29749 | TCONS_00019368-exon-sc0000326-1575043694:29537..29749 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1491911889:29977..30027 | TCONS_00019368-exon-sc0000326-1491911889:29977..30027 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1510915933:29977..30027 | TCONS_00019368-exon-sc0000326-1510915933:29977..30027 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1575043694:29977..30027 | TCONS_00019368-exon-sc0000326-1575043694:29977..30027 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1491911889:30330..30392 | TCONS_00019368-exon-sc0000326-1491911889:30330..30392 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1510915933:30330..30392 | TCONS_00019368-exon-sc0000326-1510915933:30330..30392 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1575043694:30330..30392 | TCONS_00019368-exon-sc0000326-1575043694:30330..30392 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1491911889:31423..32485 | TCONS_00019368-exon-sc0000326-1491911889:31423..32485 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1510915933:31423..32485 | TCONS_00019368-exon-sc0000326-1510915933:31423..32485 | Clytia hemisphaerica | exon |
| TCONS_00019368-exon-sc0000326-1575043694:31423..32485 | TCONS_00019368-exon-sc0000326-1575043694:31423..32485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:29537..32485 + |
Blast
The following BLAST results are available for this feature:
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