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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019367 ID=TCONS_00019367|Name=TCONS_00019367|organism=Clytia hemisphaerica|type=transcript|length=1308bp
TTTGCGGGGGTTTTTATCAACATGGAAAATTTCCCCCGCACGTTTCTTCC
TTTTCGAATCAAACTCACTCACATGTGCACGTTCTCGTCGAAATCACTTC
AAAATGCCAAAGAAAACAGAAGCAAACCAAGACTCCTTTAAAAAGCAGAA
GACATCAGCAGACCCTAAGGAGAAAAGTGAAGatCTCCCTGGAACtagca
aaaacaaagaaaatgatcCAAAGGATGACAGCAAACCAAGTGAAGatctA
TACTTTGTTCACAATGTTACACCACTGAAAAGTTATGgaaatcagcaaaa
agaatACTTCAACTGTGTATTGCAATCTCCAGTTTCCGCTCGTAAAGCTG
TGTGCTGGTCACCAAAGAAGCATAAACTTATGACCGATGTTTCCGAATCT
CTATCACCTGTAAAGATAACAAAAGTCAATTCAGATATCAACAACAATGA
TGTTATTGTTAGAGATGATGCTGAAATAATCATTTCGAGGGCACCTTCTA
GCTTCTCTCCAGATCCTCGTCTTTCTGCTACTGCCATCAACACTGTCACC
AACTTATTTTCCCTGGCCCCAAAGCAGTTGGTACGCCAATTGAAGTGTCA
TGTGACTAGAGTCTTTCAAACCACTGACCACAAGACTAGATCAAATTCGC
TCATCCGACGCCAAGAAGTTAGTGTAAGTGACAATCTCAATTCTGTCAAA
CTCATTTTGTATGGCGATGATGCAGAAACTCTATCAGCTGGTAAGTCATA
CATCTTGAAAAATGTACGTCTCAATTCTTACAACAACACCATATATGTCA
ACACCACCTCTGAAAGGCCATTCACATTTGAGAAATTGAAAAGATTGATG
CAGTTGATGTAAGTGCGTCTTCAGAAATTACCATTTTGGCTAAAATAATC
GGGATTGGGTCGATTAACATCCACTACTTTTGCATCATGTGCAATTCCAA
GCTTGCATTCCCACAAGCTGAACTTGACGATGAAGTAAAGTGCAGCAAAG
AATCGTGTCCAGGCCGAATGCTCCTCAGCTCGTGTCGCGCAAGTTGCAAT
TTGAGTCTTGTAGTtagtgacattgcaaacaataACAGATCAACCATATT
TTTTAGTACAGATAAAGTGATgctgttgaaaaaaattattgattttcCTA
TGGTAGAGAATGAAATTGCAAAAATGTTACTCCGTTTTCCTGATATTCTA
CAGGTAACTTTTGACTTAGTTACCAAGTCTGTTTTGAACATTGTAAAAGT
TTAAGTTTGACAACATTTTtcaagttgatatttttttatcttagGTTTTA
TATCTTAC Run BLAST on NCBI protein sequence of TCONS_00019367-protein >TCONS_00019367-protein ID=TCONS_00019367-protein|Name=TCONS_00019367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
LRGFLSTWKISPARFFLFESNSLTCARSRRNHFKMPKKTEANQDSFKKQK
TSADPKEKSEDLPGTSKNKENDPKDDSKPSEDLYFVHNVTPLKSYGNQQK
EYFNCVLQSPVSARKAVCWSPKKHKLMTDVSESLSPVKITKVNSDINNND
VIVRDDAEIIISRAPSSFSPDPRLSATAINTVTNLFSLAPKQLVRQLKCH
VTRVFQTTDHKTRSNSLIRRQEVSVSDNLNSVKLILYGDDAETLSAGKSY
ILKNVRLNSYNNTIYVNTTSERPFTFEKLKRLMQLM Run BLAST on NCBI transcript from alignment at sc0000326:28513..32485+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019367 ID=TCONS_00019367|Name=TCONS_00019367|organism=Clytia hemisphaerica|type=transcript|length=3973bp|location=Sequence derived from alignment at sc0000326:28513..32485+ (Clytia hemisphaerica)
TTTGCGGGGGTTTTTATCAACATGGAAAATTTCCCCCGCACGTTTCTTCC
TTTTCGAATCAAACTCACTCACATGTGCACGTTCTCGTCGAAATCACTTC
AAAATGCCAAAGAAAACAGAAGCAAACCAAGGTAAACCTAGCTGATACAA
AAAACCTTCACTTCCAATGTTTTCATTCTTCCTGTTTTGAAATAATGAGT
TATTTTAGCCACGAGCTTCTCGTGAATGACCCCCATTCTGGTTGCTATCA
TCTTATCTACCCTTTTTTCCCCcaatttaaattgattttgatagacATCA
GGAAAAGAAGTCTTCCCTCCTCTACTCAGTCCTTGACATAATGTTTCTGT
TTTCTAGATTCCTCTAAAAAGCAGAAGACATCAGCANTGAGCCCACCTAC
GCAAGCCGAGGAGCGAGACCTTTATTAATCTCGGTGAATTCTCCAGGCCA
AAAAAATCCGTTTTTGTCGTATCGGGATAATAAATCCGACTCACCATCAA
GGTTTTTGTTACTTTACCGGAATCTTTCGACTATTTTTTCCTGCATAacc
ggcatgagattggaaatggaaattcttgtgtttttttattAATGAGAAAC
tgaagcttatttttcaactaaccgtagtcctggtctttttccgctagaaa
agtggcaaacggaacttattttcgcggtaGCACAGAGAGGAGGGTGGAAC
GAGGTTGGGTAGGGGCGTAGACTATGCTCTACAGTCTAAAACGAGTTTCT
ACTAAGAAGAACAAACGTGAAGGGGGTAGCTGTATAATTTCATCACTTCC
CCCCACGGCGGCATTTTTCCTCTCCAGCCAACTTTTTTTCCAAGCGCGCG
CTacgtttttatgacgtaatcttttctcaaAGCAAAAATGATTGCGATCG
CAGCGTTTCTTTCGTCTAGCGCCCATTTCACGGGCGCGGGTTTTACTACT
TCCGCAAAGGCGTAAATCTGAATTCACCGCCCCCttgacgtaatttttga
aatatatcttTCTTGTAACGTACTCTTTGTACCATATATGGTTAAAATCA
TTACGTAATTAAAATTGAAGGTTTTAATTGGTTGAAATAGAGTCTGAGTA
CGATTCTTTGCGGGGGTTTTTATCAACATGGAAAATTTCCCCCGCACGTT
TCTTCCTTTTCGAATCAAACTCACTCACATGTGCACGTTCTCGTCGAAAT
CACTTCAAAATGCCAAAGAAAACAGAAGCAAACCAAGGTAAACCTATCTG
ATACAAAAAACCTTCACTTCCAATGTTTTCATTCTTCCTGTTTTGAAATA
ATGAGTTCTTTTAGCCACGAGCTTCTAGTGAATGACCCCCATTCTGGTTG
CTATCATCTTATCTACCCTTTTTCTCCCCcaatttaaattgattttgaca
gACATCAGGAAAAGAAGTCTTCCCTCCTCTACTCAGTCCTTGACATAATG
TTTCTGTTTTCTAGACTCCTTTAAAAAGCAGAAGACATCAGCAGACCCTA
AGGAGAAAAGTGAAGGTAAAAATATAGCAACAGATCAAAGGATAATCATT
CTATGATTATGGATTTCGAAGGGTGAGGCTGTTGGGGTTTTGGATTAAAG
GAAAATATTGGGATATCAGTatcaagaaagaaagaaagtatTCTGATTTT
ACAagacttctttgcaatcttttgAGGGTAGATTTACTAGgcattttttt
ttcgacttaGTTCTCAAACATCAGACATCAGGTGGATGTTCAGACCCCAC
TCGCTCTGTCATTAGAAGATTAAGAACCCCTCTGTACACAATAGAATaac
tattttatttcttttagatCTCCCTGGAACtagcaaaaacaaagaaaatg
atcCAAAGGATGACAGCAAACCAAGTGAAGGTAAAGCTACTACTTGTTAA
CATTATTTATGTGTGACTGCCATGAAGGAAGATGTTCTTAGGTGTAGTTA
AGCTTTCACTTTGAAAAAGAATAAAGtgtttacaagctttttttataaca
accagtaaattttggttcAGGCTGGgctattcttaatttttcgaaatttt
taggCTCATTACCATGTTCTTAATatgcttagtttctttactcaATAACT
TTAAATGGgtttaaaatcagtactttctcagtaatttttaaaatctgagG
CTGTGATTGTTAATTATTAAtcagggttcagacagaccctggaaaacctg
gaaatatgataaattttcagaaaaatcagggaaactcagggaaacccagg
gaaaaaactgtttttccccagtctgctcagggaacctcagggaattttat
tttttgaagaatgaatggaaaaacagatttaaaagtttttttagttttaa
agtgtatattcatatgcagtatttaatttttacatTAGGTTTACCATTTG
ATTTGTGTGCCTTTTGTTTAGAGATACATCTCTTTTGACTCTGcttagtt
tttatggtttgcttgatactcagggaaaaaatagctaaaatgaggaatta
ctcagggaaaaaacctttgaaaattgattaaaattcagggaattttattt
tcgaaggtctgtctgaaccctgtaatgattcttaatttgttcattaggtt
ttgtccaaatttcagcTTCGTGTTCTTCTAAAAGTgtactttttaaaaaa
gaattttaagaaaatgaaatttttttacaaacagGGAATAACTAAGAACT
gagaagatttttttcttgtgaaattctattttgatgaaaacaaaaattta
cataGAAGTTGACAGATTTAATTGTTGCAAATTAATAGGCACTGTAATTT
AATTGGCACCGTGATGTCATGCTATCATATGTCTtgcttaattaaaaaaa
aattacagagTAGTTAAAAATGACACCAATGAGTTAATTacgaatttttt
catttttcagatctATACTTTGTTCACAATGTTACACCACTGAAAAGTTA
TGgaaatcagcaaaaagaatACTTCAACTGTGTATTGCAATCTCCAGTTT
CCGCTCGTAAAGCTGTGTGCTGGTCACCAAAGAAGCATAAACTTATGACC
GATGTTTCCGAATCTCTATCACCTGTAAAGATAACAAAAGTCAATTCAGA
TATCAACAACAATGATGTTATTGTTAGAGATGATGCTGAAATAATCATTT
CGAGGGCACCTTCTAGCTTCTCTCCAGATCCTCGTCTTTCTGCTACTGCC
ATCAACACTGTCACCAACTTATTTTCCCTGGCCCCAAAGCAGTTGGTACG
CCAATTGAAGTGTCATGTGACTAGAGTCTTTCAAACCACTGACCACAAGA
CTAGATCAAATTCGCTCATCCGACGCCAAGAAGTTAGTGTAAGTGACAAT
CTCAATTCTGTCAAACTCATTTTGTATGGCGATGATGCAGAAACTCTATC
AGCTGGTAAGTCATACATCTTGAAAAATGTACGTCTCAATTCTTACAACA
ACACCATATATGTCAACACCACCTCTGAAAGGCCATTCACATTTGAGAAA
TTGAAAAGATTGATGCAGTTGATGTAAGTGCGTCTTCAGAAATTACCATT
TTGGCTAAAATAATCGGGATTGGGTCGATTAACATCCACTACTTTTGCAT
CATGTGCAATTCCAAGCTTGCATTCCCACAAGCTGAACTTGACGATGAAG
TAAAGTGCAGCAAAGAATCGTGTCCAGGCCGAATGCTCCTCAGCTCGTGT
CGCGCAAGTTGCAATTTGAGTCTTGTAGTtagtgacattgcaaacaataA
CAGATCAACCATATTTTTTAGTACAGATAAAGTGATgctgttgaaaaaaa
ttattgattttcCTATGGTAGAGAATGAAATTGCAAAAATGTTACTCCGT
TTTCCTGATATTCTACAGGTAACTTTTGACTTAGTTACCAAGTCTGTTTT
GAACATTGTAAAAGTTTAAGTTTGACAACATTTTtcaagttgatattttt
ttatcttagGTTTTATATCTTAC Coding sequence (CDS) from alignment at sc0000326:28513..32485+ >TCONS_00019367 ID=TCONS_00019367|Name=TCONS_00019367|organism=Clytia hemisphaerica|type=CDS|length=3444bp|location=Sequence derived from alignment at sc0000326:28513..32485+ (Clytia hemisphaerica)
TTGCGGGGGTTTTTATCAACATGGAAAATTTCCCCCGCACGTTTCTTCCT
TTTCGAATCAAACTCACTCACATGTGCACGTTCTCGTCGAAATCACTTCA
AAATGCCAAAGAAAACAGAAGCAAACCAAGACTCCTTTAAAAAGCAGAAG
ACATCAGCAGACCCTAAGGAGAAAAGTGAAGatCTCCCTGGAACtagcaa
aaacaaagaaaatgatcCAAAGGATGACAGCAAACCAAGTGAAGatctAT
ACTTTGTTCACAATGTTACACCACTGAAAAGTTATGgaaatcagcaaaaa
gaatACTTCAACTGTGTATTGCAATCTCCAGTTTCCGCTCGTAAAGCTGT
GTGCTGGTCACCAAAGAAGCATAAACTTATGACCGATGTTTCCGAATCTC
TATCACCTGTAAAGATAACAAAAGTCAATTCAGATATCAACAACAATGAT
GTTATTGTTAGAGATGATGCTGAAATAATCATTTCGAGGGCACCTTCTAG
CTTCTCTCCAGATCCTCGTCTTTCTGCTACTGCCATCAACACTGTCACCA
ACTTATTTTCCCTGGCCCCAAAGCAGTTGGTACGCCAATTGAAGTGTCAT
GTGACTAGAGTCTTTCAAACCACTGACCACAAGACTAGATCAAATTCGCT
CATCCGACGCCAAGAAGTTAGTGTAAGTGACAATCTCAATTCTGTCAAAC
TCATTTTGTATGGCGATGATGCAGAAACTCTATCAGCTGGTAAGTCATAC
ATCTTGAAAAATGTACGTCTCAATTCTTACAACAACACCATATATGTCAA
CACCACCTCTGAAAGGCCATTCACATTTGAGAAATTGAAAAGATTGATGC
AGTTGATGTAATTGCGGGGGTTTTTATCAACATGGAAAATTTCCCCCGCA
CGTTTCTTCCTTTTCGAATCAAACTCACTCACATGTGCACGTTCTCGTCG
AAATCACTTCAAAATGCCAAAGAAAACAGAAGCAAACCAAGACTCCTTTA
AAAAGCAGAAGACATCAGCAGACCCTAAGGAGAAAAGTGAAGatCTCCCT
GGAACtagcaaaaacaaagaaaatgatcCAAAGGATGACAGCAAACCAAG
TGAAGatctATACTTTGTTCACAATGTTACACCACTGAAAAGTTATGgaa
atcagcaaaaagaatACTTCAACTGTGTATTGCAATCTCCAGTTTCCGCT
CGTAAAGCTGTGTGCTGGTCACCAAAGAAGCATAAACTTATGACCGATGT
TTCCGAATCTCTATCACCTGTAAAGATAACAAAAGTCAATTCAGATATCA
ACAACAATGATGTTATTGTTAGAGATGATGCTGAAATAATCATTTCGAGG
GCACCTTCTAGCTTCTCTCCAGATCCTCGTCTTTCTGCTACTGCCATCAA
CACTGTCACCAACTTATTTTCCCTGGCCCCAAAGCAGTTGGTACGCCAAT
TGAAGTGTCATGTGACTAGAGTCTTTCAAACCACTGACCACAAGACTAGA
TCAAATTCGCTCATCCGACGCCAAGAAGTTAGTGTAAGTGACAATCTCAA
TTCTGTCAAACTCATTTTGTATGGCGATGATGCAGAAACTCTATCAGCTG
GTAAGTCATACATCTTGAAAAATGTACGTCTCAATTCTTACAACAACACC
ATATATGTCAACACCACCTCTGAAAGGCCATTCACATTTGAGAAATTGAA
AAGATTGATGCAGTTGATGTAATTGCGGGGGTTTTTATCAACATGGAAAA
TTTCCCCCGCACGTTTCTTCCTTTTCGAATCAAACTCACTCACATGTGCA
CGTTCTCGTCGAAATCACTTCAAAATGCCAAAGAAAACAGAAGCAAACCA
AGACTCCTTTAAAAAGCAGAAGACATCAGCAGACCCTAAGGAGAAAAGTG
AAGatCTCCCTGGAACtagcaaaaacaaagaaaatgatcCAAAGGATGAC
AGCAAACCAAGTGAAGatctATACTTTGTTCACAATGTTACACCACTGAA
AAGTTATGgaaatcagcaaaaagaatACTTCAACTGTGTATTGCAATCTC
CAGTTTCCGCTCGTAAAGCTGTGTGCTGGTCACCAAAGAAGCATAAACTT
ATGACCGATGTTTCCGAATCTCTATCACCTGTAAAGATAACAAAAGTCAA
TTCAGATATCAACAACAATGATGTTATTGTTAGAGATGATGCTGAAATAA
TCATTTCGAGGGCACCTTCTAGCTTCTCTCCAGATCCTCGTCTTTCTGCT
ACTGCCATCAACACTGTCACCAACTTATTTTCCCTGGCCCCAAAGCAGTT
GGTACGCCAATTGAAGTGTCATGTGACTAGAGTCTTTCAAACCACTGACC
ACAAGACTAGATCAAATTCGCTCATCCGACGCCAAGAAGTTAGTGTAAGT
GACAATCTCAATTCTGTCAAACTCATTTTGTATGGCGATGATGCAGAAAC
TCTATCAGCTGGTAAGTCATACATCTTGAAAAATGTACGTCTCAATTCTT
ACAACAACACCATATATGTCAACACCACCTCTGAAAGGCCATTCACATTT
GAGAAATTGAAAAGATTGATGCAGTTGATGTAATTGCGGGGGTTTTTATC
AACATGGAAAATTTCCCCCGCACGTTTCTTCCTTTTCGAATCAAACTCAC
TCACATGTGCACGTTCTCGTCGAAATCACTTCAAAATGCCAAAGAAAACA
GAAGCAAACCAAGACTCCTTTAAAAAGCAGAAGACATCAGCAGACCCTAA
GGAGAAAAGTGAAGatCTCCCTGGAACtagcaaaaacaaagaaaatgatc
CAAAGGATGACAGCAAACCAAGTGAAGatctATACTTTGTTCACAATGTT
ACACCACTGAAAAGTTATGgaaatcagcaaaaagaatACTTCAACTGTGT
ATTGCAATCTCCAGTTTCCGCTCGTAAAGCTGTGTGCTGGTCACCAAAGA
AGCATAAACTTATGACCGATGTTTCCGAATCTCTATCACCTGTAAAGATA
ACAAAAGTCAATTCAGATATCAACAACAATGATGTTATTGTTAGAGATGA
TGCTGAAATAATCATTTCGAGGGCACCTTCTAGCTTCTCTCCAGATCCTC
GTCTTTCTGCTACTGCCATCAACACTGTCACCAACTTATTTTCCCTGGCC
CCAAAGCAGTTGGTACGCCAATTGAAGTGTCATGTGACTAGAGTCTTTCA
AACCACTGACCACAAGACTAGATCAAATTCGCTCATCCGACGCCAAGAAG
TTAGTGTAAGTGACAATCTCAATTCTGTCAAACTCATTTTGTATGGCGAT
GATGCAGAAACTCTATCAGCTGGTAAGTCATACATCTTGAAAAATGTACG
TCTCAATTCTTACAACAACACCATATATGTCAACACCACCTCTGAAAGGC
CATTCACATTTGAGAAATTGAAAAGATTGATGCAGTTGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019367-exon-sc0000326-1491911889:28513..28643 | TCONS_00019367-exon-sc0000326-1491911889:28513..28643 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1510915933:28513..28643 | TCONS_00019367-exon-sc0000326-1510915933:28513..28643 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1575043694:28513..28643 | TCONS_00019367-exon-sc0000326-1575043694:28513..28643 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1491911889:29977..30027 | TCONS_00019367-exon-sc0000326-1491911889:29977..30027 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1510915933:29977..30027 | TCONS_00019367-exon-sc0000326-1510915933:29977..30027 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1575043694:29977..30027 | TCONS_00019367-exon-sc0000326-1575043694:29977..30027 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1491911889:30330..30392 | TCONS_00019367-exon-sc0000326-1491911889:30330..30392 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1510915933:30330..30392 | TCONS_00019367-exon-sc0000326-1510915933:30330..30392 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1575043694:30330..30392 | TCONS_00019367-exon-sc0000326-1575043694:30330..30392 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1491911889:31423..32485 | TCONS_00019367-exon-sc0000326-1491911889:31423..32485 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1510915933:31423..32485 | TCONS_00019367-exon-sc0000326-1510915933:31423..32485 | Clytia hemisphaerica | exon |
| TCONS_00019367-exon-sc0000326-1575043694:31423..32485 | TCONS_00019367-exon-sc0000326-1575043694:31423..32485 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:28513..32485 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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