|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019352 ID=TCONS_00019352|Name=TCONS_00019352|organism=Clytia hemisphaerica|type=transcript|length=1932bp
ggtGGGTAATTTAAAGACAgaattttttaactgatatcaatttcaacaac
aaaaaagaaactttaacaattgaacacgtaaaataagaaccaataactta
caaaagggaaaattttaacaagttaaaggtctatctacactgtaataaaa
tattgaattatttggatttaattagcgggggcgGGGgtgtcttaataaga
gcgggaggggtggatttttttttctcttaacaagaGACAAGATAGTAACA
GTCATCCATTGTTTTGACCATTTCTTTGATGAactttttagtttattttt
gtttgaattttaacGATACTCTCCACGAACAAAGAAAACAACAGAATTGA
TTCCACTGTTTGTCACCAAAAACAACGATGCCCATAGCGGATGTTTCGTC
AGGGAaagattcaagatggcgtaaGGAAGTGTGAAAAACACAAATGCCAT
TGCAATCAATATACAAATAAGTAAGACGCGTTTTAAGTTCCCATCTTTTG
CCGCATTTAAGTGTTTATTGTTTCTATGGTGTTGTATGATGGCGAACATC
AAGATACTGTAGATTGTCACTAAAGCCACGTCTGCAAAAATGATGATGAA
CGACAaccattctttcattttttgttcaaacaTGTCAATAAAACGgatgt
tttttatctttggCGGTGCTTTGTGTGGTGGCTGAGACTTTGGTGTTCTG
GTTGGATGCATGGTGCTGGTTAACATGGATATCGGTTTTCTATTCATTAT
TTTCCGGAGTTTTCTTATAGGGTTGGTAGTTTGCTCTCCTTTGCTTTGTT
GTATGGGGTCCGCAGAAGGATTAATTTTTTGGACCAATAGGTCACTTGAA
TGAGACAAATTTTTATCCTGTTGTTTTACATCATGCTGAGTGAAAGTTTC
TTTTATATAGCTGGTAGAATTGAACACATTTGATTTATTGTGTTTGATGA
AAATCATCGATTGTGTGATTTCGTTACGGGGTACAACAGTAGTGTTTGTG
AATGTGATATTTTCTGCTTCGTATTcgatttcttctttttgaaaaacacg
TGAAAAAGAATTTGAGATGTAAAGTGAAGCTGATATAATGAACGAAATCG
ACCAAAGTATAAGAAGGATTCTGATGATGCATTTTCTACTGATTAAAATA
TTATGTTGGACAGGTTTGATGACCGCGAACAAACGATCACCAGCGATGAT
GAGTAGGTGTAAAATGGAGGacacaataaagaaaaaatacatGGTGTACC
AGAGACTGGTTAAAGAAGTCCATTGTCTCCAAGGAGGGTGAGCAAAATAC
ATGATCAGTAACGTCGAGCTTGAGAATCCAAAGGAAAAATCTGAAATGGA
CATGCTGAAGATTAGTAATTCGTAGATCTTCAACTTTCTTGGCAACTTCT
TGAGGAGTAGAATTTCAATCATGTTTAAGACCGATACGATATAGCCGAGA
ACTACATTGGATATGTTGATAAGGATGACTGAGGACGCGGGTGTTGGTGT
TGGTTGTGATACCAATCGTCTTGTGACACGCTGTCGTGTTGTGCGGTTCT
TTTGGTTCGGGTTGAACGGGTTTGTTGGTCGCCATGACGGTACTCGAGAA
GGTCTTGACGGTAATCGAGAANTGTTGTGCGGTTCTTTTGGTTCGGGTTG
AACGGGTTTGTTGGTCGCCATGACGGTACTCGAGAAGGTCTTGACGGTAA
TGGTTGTGACGGTACTCGAGAAGGTCGTGACGGTGCTCGAGAAGGTCGTG
ACGGTCGCTGGTTCTTTGATGGCCGTAGTGAAGGCCTCGATGGTCCGGTA
ACAAGAGGTAATGTCAAAACTAACAGGAATATTACCATTCTTGTCATCTT
CATTTATAGATTCCGAGTCCataagaaattaagaaaaactatgttaatct
ttttttagttctttttactttttgcaGCGAAA Run BLAST on NCBI protein sequence of TCONS_00019352-protein >TCONS_00019352-protein ID=TCONS_00019352-protein|Name=TCONS_00019352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
MDSESINEDDKNGNIPVSFDITSCYRTIEAFTTAIKEPATVTTFSSTVTT
FSSTVTTITVKTFSSTVMATNKPVQPEPKEPHNXSRLPSRPSRVPSWRPT
NPFNPNQKNRTTRQRVTRRLVSQPTPTPASSVILINISNVVLGYIVSVLN
MIEILLLKKLPRKLKIYELLIFSMSISDFSFGFSSSTLLIMYFAHPPWRQ
WTSLTSLWYTMYFFFIVSSILHLLIIAGDRLFAVIKPVQHNILISRKCII
RILLILWSISFIISASLYISNSFSRVFQKEEIEYEAENITFTNTTVVPRN
EITQSMIFIKHNKSNVFNSTSYIKETFTQHDVKQQDKNLSHSSDLLVQKI
NPSADPIQQSKGEQTTNPIRKLRKIMNRKPISMLTSTMHPTRTPKSQPPH
KAPPKIKNIRFIDMFEQKMKEWLSFIIIFADVALVTIYSILMFAIIQHHR
NNKHLNAAKDGNLKRVLLICILIAMAFVFFTLPYAILNLSLTKHPLWASL
FLVTNSGINSVVFFVRGEYR Run BLAST on NCBI transcript from alignment at sc0000325:93668..95599 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019352 ID=TCONS_00019352|Name=TCONS_00019352|organism=Clytia hemisphaerica|type=transcript|length=1932bp|location=Sequence derived from alignment at sc0000325:93668..95599 (Clytia hemisphaerica)
TTTCGCtgcaaaaagtaaaaagaactaaaaaaagattaacatagtttttc
ttaatttcttatGGACTCGGAATCTATAAATGAAGATGACAAGAATGGTA
ATATTCCTGTTAGTTTTGACATTACCTCTTGTTACCGGACCATCGAGGCC
TTCACTACGGCCATCAAAGAACCAGCGACCGTCACGACCTTCTCGAGCAC
CGTCACGACCTTCTCGAGTACCGTCACAACCATTACCGTCAAGACCTTCT
CGAGTACCGTCATGGCGACCAACAAACCCGTTCAACCCGAACCAAAAGAA
CCGCACAACANTTCTCGATTACCGTCAAGACCTTCTCGAGTACCGTCATG
GCGACCAACAAACCCGTTCAACCCGAACCAAAAGAACCGCACAACACGAC
AGCGTGTCACAAGACGATTGGTATCACAACCAACACCAACACCCGCGTCC
TCAGTCATCCTTATCAACATATCCAATGTAGTTCTCGGCTATATCGTATC
GGTCTTAAACATGATTGAAATTCTACTCCTCAAGAAGTTGCCAAGAAAGT
TGAAGATCTACGAATTACTAATCTTCAGCATGTCCATTTCAGATTTTTCC
TTTGGATTCTCAAGCTCGACGTTACTGATCATGTATTTTGCTCACCCTCC
TTGGAGACAATGGACTTCTTTAACCAGTCTCTGGTACACCatgtattttt
tctttattgtgtCCTCCATTTTACACCTACTCATCATCGCTGGTGATCGT
TTGTTCGCGGTCATCAAACCTGTCCAACATAATATTTTAATCAGTAGAAA
ATGCATCATCAGAATCCTTCTTATACTTTGGTCGATTTCGTTCATTATAT
CAGCTTCACTTTACATCTCAAATTCTTTTTCAcgtgtttttcaaaaagaa
gaaatcgAATACGAAGCAGAAAATATCACATTCACAAACACTACTGTTGT
ACCCCGTAACGAAATCACACAATCGATGATTTTCATCAAACACAATAAAT
CAAATGTGTTCAATTCTACCAGCTATATAAAAGAAACTTTCACTCAGCAT
GATGTAAAACAACAGGATAAAAATTTGTCTCATTCAAGTGACCTATTGGT
CCAAAAAATTAATCCTTCTGCGGACCCCATACAACAAAGCAAAGGAGAGC
AAACTACCAACCCTATAAGAAAACTCCGGAAAATAATGAATAGAAAACCG
ATATCCATGTTAACCAGCACCATGCATCCAACCAGAACACCAAAGTCTCA
GCCACCACACAAAGCACCGccaaagataaaaaacatcCGTTTTATTGACA
tgtttgaacaaaaaatgaaagaatggtTGTCGTTCATCATCATTTTTGCA
GACGTGGCTTTAGTGACAATCTACAGTATCTTGATGTTCGCCATCATACA
ACACCATAGAAACAATAAACACTTAAATGCGGCAAAAGATGGGAACTTAA
AACGCGTCTTACTTATTTGTATATTGATTGCAATGGCATTTGTGTTTTTC
ACACTTCCttacgccatcttgaatcttTCCCTGACGAAACATCCGCTATG
GGCATCGTTGTTTTTGGTGACAAACAGTGGAATCAATTCTGTTGTTTTCT
TTGTTCGTGGAGAGTATCgttaaaattcaaacaaaaataaactaaaaagt
TCATCAAAGAAATGGTCAAAACAATGGATGACTGTTACTATCTTGTCtct
tgttaagagaaaaaaaaatccacccctcccgctcttattaagacacCCCc
gcccccgctaattaaatccaaataattcaatattttattacagtgtagat
agacctttaacttgttaaaattttcccttttgtaagttattggttcttat
tttacgtgttcaattgttaaagtttcttttttgttgttgaaattgatatc
agttaaaaaattcTGTCTTTAAATTACCCacc Coding sequence (CDS) from alignment at sc0000325:93668..95599 >TCONS_00019352 ID=TCONS_00019352|Name=TCONS_00019352|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at sc0000325:93668..95599 (Clytia hemisphaerica)
atGGACTCGGAATCTATAAATGAAGATGACAAGAATGGTAATATTCCTGT
TAGTTTTGACATTACCTCTTGTTACCGGACCATCGAGGCCTTCACTACGG
CCATCAAAGAACCAGCGACCGTCACGACCTTCTCGAGCACCGTCACGACC
TTCTCGAGTACCGTCACAACCATTACCGTCAAGACCTTCTCGAGTACCGT
CATGGCGACCAACAAACCCGTTCAACCCGAACCAAAAGAACCGCACAACA
NTTCTCGATTACCGTCAAGACCTTCTCGAGTACCGTCATGGCGACCAACA
AACCCGTTCAACCCGAACCAAAAGAACCGCACAACACGACAGCGTGTCAC
AAGACGATTGGTATCACAACCAACACCAACACCCGCGTCCTCAGTCATCC
TTATCAACATATCCAATGTAGTTCTCGGCTATATCGTATCGGTCTTAAAC
ATGATTGAAATTCTACTCCTCAAGAAGTTGCCAAGAAAGTTGAAGATCTA
CGAATTACTAATCTTCAGCATGTCCATTTCAGATTTTTCCTTTGGATTCT
CAAGCTCGACGTTACTGATCATGTATTTTGCTCACCCTCCTTGGAGACAA
TGGACTTCTTTAACCAGTCTCTGGTACACCatgtattttttctttattgt
gtCCTCCATTTTACACCTACTCATCATCGCTGGTGATCGTTTGTTCGCGG
TCATCAAACCTGTCCAACATAATATTTTAATCAGTAGAAAATGCATCATC
AGAATCCTTCTTATACTTTGGTCGATTTCGTTCATTATATCAGCTTCACT
TTACATCTCAAATTCTTTTTCAcgtgtttttcaaaaagaagaaatcgAAT
ACGAAGCAGAAAATATCACATTCACAAACACTACTGTTGTACCCCGTAAC
GAAATCACACAATCGATGATTTTCATCAAACACAATAAATCAAATGTGTT
CAATTCTACCAGCTATATAAAAGAAACTTTCACTCAGCATGATGTAAAAC
AACAGGATAAAAATTTGTCTCATTCAAGTGACCTATTGGTCCAAAAAATT
AATCCTTCTGCGGACCCCATACAACAAAGCAAAGGAGAGCAAACTACCAA
CCCTATAAGAAAACTCCGGAAAATAATGAATAGAAAACCGATATCCATGT
TAACCAGCACCATGCATCCAACCAGAACACCAAAGTCTCAGCCACCACAC
AAAGCACCGccaaagataaaaaacatcCGTTTTATTGACAtgtttgaaca
aaaaatgaaagaatggtTGTCGTTCATCATCATTTTTGCAGACGTGGCTT
TAGTGACAATCTACAGTATCTTGATGTTCGCCATCATACAACACCATAGA
AACAATAAACACTTAAATGCGGCAAAAGATGGGAACTTAAAACGCGTCTT
ACTTATTTGTATATTGATTGCAATGGCATTTGTGTTTTTCACACTTCCtt
acgccatcttgaatcttTCCCTGACGAAACATCCGCTATGGGCATCGTTG
TTTTTGGTGACAAACAGTGGAATCAATTCTGTTGTTTTCTTTGTTCGTGG
AGAGTATCgttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019352-exon-sc0000325-1491911889:93668..95599 | TCONS_00019352-exon-sc0000325-1491911889:93668..95599 | Clytia hemisphaerica | exon |
| TCONS_00019352-exon-sc0000325-1510915933:93668..95599 | TCONS_00019352-exon-sc0000325-1510915933:93668..95599 | Clytia hemisphaerica | exon |
| TCONS_00019352-exon-sc0000325-1575043694:93668..95599 | TCONS_00019352-exon-sc0000325-1575043694:93668..95599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:93668..95599 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
