TCONS_00019350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019350
Unique NameTCONS_00019350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019350 ID=TCONS_00019350|Name=TCONS_00019350|organism=Clytia hemisphaerica|type=transcript|length=352bp
CCGCCAATATTTATCGCAAGCTTTATGCTACTTGATACCTATAATACTTC
ATCTGATTGGTGTATACCTGCTCCACGCTACACGCTGGTTGCATAGCAAC
AAAATACAACGACTCTACTTACTGAATTTGAGTATTGTCGAGATAGTTCG
CGGTCTTTTGAAATTCATATACCCATTGGTGTTAATATGGACGGAAGATT
CTCGCAATTGTGTCGCTTTCTATCTCTGGCTGATCCAAACGAGTGGTGGC
TTCTTGTGGTATATTTTGGTCATGGTTCAGTTGACTGTTGATAGGTTTCT
AGAAGTATATTTGAGCTTGAGATATCAGTTATACTGTACTGAGGAACGAA
TC
Run BLAST on NCBI

protein sequence of TCONS_00019350-protein

>TCONS_00019350-protein ID=TCONS_00019350-protein|Name=TCONS_00019350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
RQYLSQALCYLIPIILHLIGVYLLHATRWLHSNKIQRLYLLNLSIVEIVR
GLLKFIYPLVLIWTEDSRNCVAFYLWLIQTSGGFLWYILVMVQLTVDRFL
EVYLSLRYQLYCTEERI
Run BLAST on NCBI

transcript from alignment at sc0000325:55208..55559

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019350 ID=TCONS_00019350|Name=TCONS_00019350|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0000325:55208..55559 (Clytia hemisphaerica)
GATTCGTTCCTCAGTACAGTATAACTGATATCTCAAGCTCAAATATACTT
CTAGAAACCTATCAACAGTCAACTGAACCATGACCAAAATATACCACAAG
AAGCCACCACTCGTTTGGATCAGCCAGAGATAGAAAGCGACACAATTGCG
AGAATCTTCCGTCCATATTAACACCAATGGGTATATGAATTTCAAAAGAC
CGCGAACTATCTCGACAATACTCAAATTCAGTAAGTAGAGTCGTTGTATT
TTGTTGCTATGCAACCAGCGTGTAGCGTGGAGCAGGTATACACCAATCAG
ATGAAGTATTATAGGTATCAAGTAGCATAAAGCTTGCGATAAATATTGGC
GG

Coding sequence (CDS) from alignment at sc0000325:55208..55559

>TCONS_00019350 ID=TCONS_00019350|Name=TCONS_00019350|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000325:55208..55559 (Clytia hemisphaerica)
GATTCGTTCCTCAGTACAGTATAACTGATATCTCAAGCTCAAATATACTT
CTAGAAACCTATCAACAGTCAACTGAACCATGACCAAAATATACCACAAG
AAGCCACCACTCGTTTGGATCAGCCAGAGATAGAAAGCGACACAATTGCG
AGAATCTTCCGTCCATATTAACACCAATGGGTATATGAATTTCAAAAGAC
CGCGAACTATCTCGACAATACTCAAATTCAGTAAGTAGAGTCGTTGTATT
TTGTTGCTATGCAACCAGCGTGTAGCGTGGAGCAGGTATACACCAATCAG
ATGAAGTATTATAGGTATCAAGTAGCATAAAGCTTGCGATAAATATTGGC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010870XLOC_010870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019350-exon-sc0000325-1491911889:55208..55559TCONS_00019350-exon-sc0000325-1491911889:55208..55559Clytia hemisphaericaexon
TCONS_00019350-exon-sc0000325-1510915933:55208..55559TCONS_00019350-exon-sc0000325-1510915933:55208..55559Clytia hemisphaericaexon
TCONS_00019350-exon-sc0000325-1575043694:55208..55559TCONS_00019350-exon-sc0000325-1575043694:55208..55559Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019350-proteinTCONS_00019350-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:55208..55559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.06025	1.24317	0	0	0.0569581	0.190895	0.791194	2.38042	0.479746	0.555089	0.284462	0.775851	1.56096	0.713185	0	0	1.64289	1.16991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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