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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019319 ID=TCONS_00019319|Name=TCONS_00019319|organism=Clytia hemisphaerica|type=transcript|length=631bp
AGCCACGCCTGTCTTCGGTGTATGGTTGAAAACAGGTGACAAAGGAATAT
ATGGCATTCAACTCTTGAAAAATAATGGTGAAGTTGAGTATGTGACATTC
GAAGATAAAGTCTCTGGTCGGTATGATAACGAGGCTTGGAGGTCAGTGGT
TTTTCACTTTCATCAGGGGAAAGCAAATGAATTAAAGATCGACTTATTTG
TCAATTGTCACCATGTGGGCAATCATACTGTTCAAAACCTCGAGCTGAGA
AATTTGCGTTCAAATGACAACTTGGAATTGAGATTGGCACAGAGAGAAAT
AGCTGGCAAAATTTTTTCCACATACAAGGGATGGCTGCGagactttcatt
tcattttcaatcgAGACATTCACCAATTCATTGACCGATCGAATTGCCGG
CAACCGATACCAAGAAATCGTCAATATTCACCGGCTTACAGTGCAAGAAA
TGTGAATTCTTCACCAAATTTTCAGATGGACCCGAATGATATTATCACTA
TGTTAAATTTCGCTCAAAAGAAATCTCCTGTTGATTCAAAGCAACCTTTT
GGTAGTGAAACCGAAAACTCTGCAATCAAAAAGATTCTAAATATTGTACA
GGATGTCCGGTACAATCAAGATAACCAGGTG Run BLAST on NCBI protein sequence of TCONS_00019319-protein >TCONS_00019319-protein ID=TCONS_00019319-protein|Name=TCONS_00019319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
ATPVFGVWLKTGDKGIYGIQLLKNNGEVEYVTFEDKVSGRYDNEAWRSVV
FHFHQGKANELKIDLFVNCHHVGNHTVQNLELRNLRSNDNLELRLAQREI
AGKIFSTYKGWLRDFHFIFNRDIHQFIDRSNCRQPIPRNRQYSPAYSARN
VNSSPNFQMDPNDIITMLNFAQKKSPVDSKQPFGSETENSAIKKILNIVQ
DVRYNQDNQV Run BLAST on NCBI transcript from alignment at sc0000325:268543..270523+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019319 ID=TCONS_00019319|Name=TCONS_00019319|organism=Clytia hemisphaerica|type=transcript|length=1981bp|location=Sequence derived from alignment at sc0000325:268543..270523+ (Clytia hemisphaerica)
AGCCACGCCTGTCTTCGGTGTATGGTTGAAAACAGGTGACAAAGGAATAT
ATGGCATTCAACTCTTGAAAAATAATGGTGAAGTTGAGTATGTGACATTC
GAAGATAAAGgtgaaacaataaatttcttTTGCCTAAATCTGTTATGTCC
TTTGTGAAACCTCTGGATGGATAGATTCTTTGTCTTTCGCAAGTCATgac
aaaataaagcaaaataatgcgccatgTTTATAAAAAGTAGTAGACCACAG
TTCGGCGCAGATTTGGTCAATCCAAACAAATGCCGGCACCAAGCAGTGgt
taacttttcaatatattacaATATTTAGCTTCATCCAGAGACAGATTAGC
CCTCTCTAGTGTTTTATATCAGACTGCAAACGCTGGGGTCAGAGGAATGT
TATTGATTTCAATTCTCTGTCGTTCCCTTTCAAGTTATTTTTGGAGACTG
ATCAGGGTGAACTGATCTGGAAATTTTTCACGAAAATAGTTGAAAGCTAT
TAcagtagaaaaatataaaacattagCCACTGGAAACGATTAATGGCAGG
TTAAGATAGCTAGAGAAAATCAAAATGCTAAAGACACGTATGTGTGAATC
ACATACACCACACCGAGCCACCGATAAGTTGGAGAAAAACCAAAGCTTGC
TCTTATCTCATTTGATTCATTCTAGTCTCTGGTCGGTATGATAACGAGGC
TTGGAGGTCAGTGGTTTTTCACTTTCATCAGGGGAAAGCAAATGAATTAA
AGATCGACTTATTTGTCAATTGTCACCATGTGGGCAATCATACTGTTCAA
AACCTCGAGCTGAGAAATTTGCGTTCAAATGACAACTTGGAATTGAGATT
GGCACAGAGAGAAATAGCTGGCAAAATTTTTTCCACATACAAGGTATCtt
catttgttttgtttttttattgaaaagttagGCTGATTAGGGTGATTTTG
GCTCGCGTTCAAATATGGTGAAAATatagaacacccctgtctcacagccc
cgatgaGACATTTTCCCACAGCACGGATaaaattttctatcaaaatacca
atggggataaaaattctattaatCTTCAATCGTAAAACGTggtgggatgg
ttttgaacTGCTATGTTTTTTCACTTTGAATTTCGGATGGGGATGAATTA
AAGTCGATTTGCCAGGGGGTTGAAGTTGTATTAGGTTATTTTTCcaaccg
gggacgaaattttggcctaatttttcagtggggctggggtcccatcCGGT
CTGTGACACAAGGCTGTTACAAAGGTTATTCTTCGACTTACGTTTGACGG
TTTGATAATCTTGATCTTCTTCTCTTTATCCTTTTAGGGATGGCTGCGag
actttcatttcattttcaatcgAGACATTCACCAATTCATTGACCGATCG
AATTGCCGGCAACCGATACCAAGAAATCGTCAATATTCACCGGCTTACAG
TGCAAGTTAGCTGATACTTTTGCAGAAAAATGTTATTGCAATAATTCGCG
AAAAAAGATATTCTTCCGGAAAATCATGCCCTTTTTTACGAAAGAACTAA
TTCCAACTTATAATATCTTTAATATTGGTGAATTCGGAAACTTCAGGTTA
TAGTAgatctttcacaaaaatttttgagaatCTTGGATACAGAAGTTCGA
ATCAAATTGCCAAAGTATTTATTTCGTGAAATATTATGAGAAAATATAAC
CACGACATTCAATTTTCGTAAATTACAATATTTTAATCAGATTGTTAGAC
TCCCCTAAAATCACCCTAAAATATATTTTACGTCTTTTTCTACCAGGAAA
TGTGAATTCTTCACCAAATTTTCAGATGGACCCGAATGATATTATCACTA
TGTTAAATTTCGCTCAAAAGAAATCTCCTGTTGATTCAAAGCAACCTTTT
GGTAGTGAAACCGAAAACTCTGCAATCAAAAAGATTCTAAATATTGTACA
GGATGTCCGGTACAATCAAGATAACCAGGTG Coding sequence (CDS) from alignment at sc0000325:268543..270523+ >TCONS_00019319 ID=TCONS_00019319|Name=TCONS_00019319|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at sc0000325:268543..270523+ (Clytia hemisphaerica)
GCCACGCCTGTCTTCGGTGTATGGTTGAAAACAGGTGACAAAGGAATATA
TGGCATTCAACTCTTGAAAAATAATGGTGAAGTTGAGTATGTGACATTCG
AAGATAAAGTCTCTGGTCGGTATGATAACGAGGCTTGGAGGTCAGTGGTT
TTTCACTTTCATCAGGGGAAAGCAAATGAATTAAAGATCGACTTATTTGT
CAATTGTCACCATGTGGGCAATCATACTGTTCAAAACCTCGAGCTGAGAA
ATTTGCGTTCAAATGACAACTTGGAATTGAGATTGGCACAGAGAGAAATA
GCTGGCAAAATTTTTTCCACATACAAGGGATGGCTGCGagactttcattt
cattttcaatcgAGACATTCACCAATTCATTGACCGATCGAATTGCCGGC
AACCGATACCAAGAAATCGTCAATATTCACCGGCTTACAGTGCAAGAAAT
GTGAATTCTTCACCAAATTTTCAGATGGACCCGAATGATATTATCACTAT
GTTAAATTTCGCTCAAAAGAAATCTCCTGTTGATTCAAAGCAACCTTTTG
GTAGTGAAACCGAAAACTCTGCAATCAAAAAGATTCTAAATATTGTACAG
GATGTCCGGTACAATCAAGATAACCAGGTGGCCACGCCTGTCTTCGGTGT
ATGGTTGAAAACAGGTGACAAAGGAATATATGGCATTCAACTCTTGAAAA
ATAATGGTGAAGTTGAGTATGTGACATTCGAAGATAAAGTCTCTGGTCGG
TATGATAACGAGGCTTGGAGGTCAGTGGTTTTTCACTTTCATCAGGGGAA
AGCAAATGAATTAAAGATCGACTTATTTGTCAATTGTCACCATGTGGGCA
ATCATACTGTTCAAAACCTCGAGCTGAGAAATTTGCGTTCAAATGACAAC
TTGGAATTGAGATTGGCACAGAGAGAAATAGCTGGCAAAATTTTTTCCAC
ATACAAGGGATGGCTGCGagactttcatttcattttcaatcgAGACATTC
ACCAATTCATTGACCGATCGAATTGCCGGCAACCGATACCAAGAAATCGT
CAATATTCACCGGCTTACAGTGCAAGAAATGTGAATTCTTCACCAAATTT
TCAGATGGACCCGAATGATATTATCACTATGTTAAATTTCGCTCAAAAGA
AATCTCCTGTTGATTCAAAGCAACCTTTTGGTAGTGAAACCGAAAACTCT
GCAATCAAAAAGATTCTAAATATTGTACAGGATGTCCGGTACAATCAAGA
TAACCAGGTGGCCACGCCTGTCTTCGGTGTATGGTTGAAAACAGGTGACA
AAGGAATATATGGCATTCAACTCTTGAAAAATAATGGTGAAGTTGAGTAT
GTGACATTCGAAGATAAAGTCTCTGGTCGGTATGATAACGAGGCTTGGAG
GTCAGTGGTTTTTCACTTTCATCAGGGGAAAGCAAATGAATTAAAGATCG
ACTTATTTGTCAATTGTCACCATGTGGGCAATCATACTGTTCAAAACCTC
GAGCTGAGAAATTTGCGTTCAAATGACAACTTGGAATTGAGATTGGCACA
GAGAGAAATAGCTGGCAAAATTTTTTCCACATACAAGGGATGGCTGCGag
actttcatttcattttcaatcgAGACATTCACCAATTCATTGACCGATCG
AATTGCCGGCAACCGATACCAAGAAATCGTCAATATTCACCGGCTTACAG
TGCAAGAAATGTGAATTCTTCACCAAATTTTCAGATGGACCCGAATGATA
TTATCACTATGTTAAATTTCGCTCAAAAGAAATCTCCTGTTGATTCAAAG
CAACCTTTTGGTAGTGAAACCGAAAACTCTGCAATCAAAAAGATTCTAAA
TATTGTACAGGATGTCCGGTACAATCAAGATAACCAGGTGGCCACGCCTG
TCTTCGGTGTATGGTTGAAAACAGGTGACAAAGGAATATATGGCATTCAA
CTCTTGAAAAATAATGGTGAAGTTGAGTATGTGACATTCGAAGATAAAGT
CTCTGGTCGGTATGATAACGAGGCTTGGAGGTCAGTGGTTTTTCACTTTC
ATCAGGGGAAAGCAAATGAATTAAAGATCGACTTATTTGTCAATTGTCAC
CATGTGGGCAATCATACTGTTCAAAACCTCGAGCTGAGAAATTTGCGTTC
AAATGACAACTTGGAATTGAGATTGGCACAGAGAGAAATAGCTGGCAAAA
TTTTTTCCACATACAAGGGATGGCTGCGagactttcatttcattttcaat
cgAGACATTCACCAATTCATTGACCGATCGAATTGCCGGCAACCGATACC
AAGAAATCGTCAATATTCACCGGCTTACAGTGCAAGAAATGTGAATTCTT
CACCAAATTTTCAGATGGACCCGAATGATATTATCACTATGTTAAATTTC
GCTCAAAAGAAATCTCCTGTTGATTCAAAGCAACCTTTTGGTAGTGAAAC
CGAAAACTCTGCAATCAAAAAGATTCTAAATATTGTACAGGATGTCCGGT
ACAATCAAGATAACCAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019319-exon-sc0000325-1491911889:268543..268652 | TCONS_00019319-exon-sc0000325-1491911889:268543..268652 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1510915933:268543..268652 | TCONS_00019319-exon-sc0000325-1510915933:268543..268652 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1575043694:268543..268652 | TCONS_00019319-exon-sc0000325-1575043694:268543..268652 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1491911889:269218..269435 | TCONS_00019319-exon-sc0000325-1491911889:269218..269435 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1510915933:269218..269435 | TCONS_00019319-exon-sc0000325-1510915933:269218..269435 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1575043694:269218..269435 | TCONS_00019319-exon-sc0000325-1575043694:269218..269435 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1491911889:269880..269997 | TCONS_00019319-exon-sc0000325-1491911889:269880..269997 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1510915933:269880..269997 | TCONS_00019319-exon-sc0000325-1510915933:269880..269997 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1575043694:269880..269997 | TCONS_00019319-exon-sc0000325-1575043694:269880..269997 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1491911889:270339..270523 | TCONS_00019319-exon-sc0000325-1491911889:270339..270523 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1510915933:270339..270523 | TCONS_00019319-exon-sc0000325-1510915933:270339..270523 | Clytia hemisphaerica | exon |
| TCONS_00019319-exon-sc0000325-1575043694:270339..270523 | TCONS_00019319-exon-sc0000325-1575043694:270339..270523 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:268543..270523 + |
Blast
The following BLAST results are available for this feature:
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