TCONS_00019308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019308
Unique NameTCONS_00019308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019308 ID=TCONS_00019308|Name=TCONS_00019308|organism=Clytia hemisphaerica|type=transcript|length=308bp
TTGTGTTCGATTGCAAAACGCCACAGTAAAGTCTTCTCTTTCAGACTTTG
AAGTCGAGGATTTGTTATTTCATCGAGTGAACGGTTGCCGAAGATGGCAA
CCAAAGGCTTGTGGTCGGTGATGACGAGGAGGTTGTCACAACCTTGGGTG
AAGTAGCGTGTCTGTTTCAAGGAGTAGGCAATAGCGAGTGCCTCTCCTTC
AACTGGAGCGTAACGTGACTCTTCTGGTTTAAGGAACCTGGACCCTGCGA
GCGTGATTTTCCAGCCGTCTTGACAGCATCCTGGGGATTGACTCGGACAG
GAGCAGTG
Run BLAST on NCBI

protein sequence of TCONS_00019308-protein

>TCONS_00019308-protein ID=TCONS_00019308-protein|Name=TCONS_00019308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
HCSCPSQSPGCCQDGWKITLAGSRFLKPEESRYAPVEGEALAIAYSLKQT
RYFTQGCDNLLVITDHKPLVAIFGNRSLDEITNPRLQSLKEKTLLWRFAI
EH
Run BLAST on NCBI

transcript from alignment at sc0000323:283770..284077

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019308 ID=TCONS_00019308|Name=TCONS_00019308|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0000323:283770..284077 (Clytia hemisphaerica)
CACTGCTCCTGTCCGAGTCAATCCCCAGGATGCTGTCAAGACGGCTGGAA
AATCACGCTCGCAGGGTCCAGGTTCCTTAAACCAGAAGAGTCACGTTACG
CTCCAGTTGAAGGAGAGGCACTCGCTATTGCCTACTCCTTGAAACAGACA
CGCTACTTCACCCAAGGTTGTGACAACCTCCTCGTCATCACCGACCACAA
GCCTTTGGTTGCCATCTTCGGCAACCGTTCACTCGATGAAATAACAAATC
CTCGACTTCAAAGTCTGAAAGAGAAGACTTTACTGTGGCGTTTTGCAATC
GAACACAA

Coding sequence (CDS) from alignment at sc0000323:283770..284077

>TCONS_00019308 ID=TCONS_00019308|Name=TCONS_00019308|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000323:283770..284077 (Clytia hemisphaerica)
CACTGCTCCTGTCCGAGTCAATCCCCAGGATGCTGTCAAGACGGCTGGAA
AATCACGCTCGCAGGGTCCAGGTTCCTTAAACCAGAAGAGTCACGTTACG
CTCCAGTTGAAGGAGAGGCACTCGCTATTGCCTACTCCTTGAAACAGACA
CGCTACTTCACCCAAGGTTGTGACAACCTCCTCGTCATCACCGACCACAA
GCCTTTGGTTGCCATCTTCGGCAACCGTTCACTCGATGAAATAACAAATC
CTCGACTTCAAAGTCTGAAAGAGAAGACTTTACTGTGGCGTTTTGCAATC
GAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010843XLOC_010843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019308-exon-sc0000323-1491911889:283770..284077TCONS_00019308-exon-sc0000323-1491911889:283770..284077Clytia hemisphaericaexon
TCONS_00019308-exon-sc0000323-1510915933:283770..284077TCONS_00019308-exon-sc0000323-1510915933:283770..284077Clytia hemisphaericaexon
TCONS_00019308-exon-sc0000323-1575043694:283770..284077TCONS_00019308-exon-sc0000323-1575043694:283770..284077Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019308-proteinTCONS_00019308-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:283770..284077 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.396749	2.89802	4.58011	2.30238	2.15546	0.603635	3.36465	6.53162	2.14681	2.38203	2.96852	2.44052	3.05557	3.76421	2.75585	1.14221	1.19524	0.346293	1.01346	0.410663	0	3.84544	2.40238	2.45557	1.04826	1.59013	0.405024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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