TCONS_00019300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019300
Unique NameTCONS_00019300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019300 ID=TCONS_00019300|Name=TCONS_00019300|organism=Clytia hemisphaerica|type=transcript|length=620bp
aaaatatcaagaaatttgattttgattttgtgtactggaaaaaaattgaa
tttgaagaaCCACGAATATATCAATATAAAAAACCATTatggagaaaaat
aaaaacaataaaattttacaatatAAATAATTCGTATCAGGAATGTATTA
GCTAAAAGGTATCAAAGACGGTTGACGAAGAAGATCACTTAGAATATAGA
AATAAACTCTACGAACTGAAACCTACGAATAAGCTGTCGACCAATCAAAT
TAACATTCTTCGTAGAtacagccaacaccagggtatacTCTTGCGTCCAG
TAGCGTAATAAAAAAACCTGGAATACAAGGGAACAAAGTCGAACAGTCTT
CGTCTGTCTGAACTTTCAGATCCTTGTTTTAAGAACAGTTTGGTACAGTT
TGTAACATCAGATCAGCAAAGCTGAAAGAAATCTTTGAATTATGACGGAA
GTTCACGAGCACGAAGACGAGGGCCAAAGAACTGGAGAAATAGTGAATGC
GGTGTTCAGTTTCATATATTTATTAATCCATTTCGCTATTATCGTTGTTA
TACTGACTTCATCACGAATCAGATCTAAGAAACCAATCCAGTTGATTCTA
AGCTTAAGCATTGGTCATTT
Run BLAST on NCBI

transcript from alignment at sc0000323:113926..114545

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019300 ID=TCONS_00019300|Name=TCONS_00019300|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at sc0000323:113926..114545 (Clytia hemisphaerica)
AAATGACCAATGCTTAAGCTTAGAATCAACTGGATTGGTTTCTTAGATCT
GATTCGTGATGAAGTCAGTATAACAACGATAATAGCGAAATGGATTAATA
AATATATGAAACTGAACACCGCATTCACTATTTCTCCAGTTCTTTGGCCC
TCGTCTTCGTGCTCGTGAACTTCCGTCATAATTCAAAGATTTCTTTCAGC
TTTGCTGATCTGATGTTACAAACTGTACCAAACTGTTCTTAAAACAAGGA
TCTGAAAGTTCAGACAGACGAAGACTGTTCGACTTTGTTCCCTTGTATTC
CAGGTTTTTTTATTACGCTACTGGACGCAAGAgtataccctggtgttggc
tgtaTCTACGAAGAATGTTAATTTGATTGGTCGACAGCTTATTCGTAGGT
TTCAGTTCGTAGAGTTTATTTCTATATTCTAAGTGATCTTCTTCGTCAAC
CGTCTTTGATACCTTTTAGCTAATACATTCCTGATACGAATTATTTatat
tgtaaaattttattgtttttatttttctccatAATGGTTTTTTATATTGA
TATATTCGTGGttcttcaaattcaatttttttccagtacacaaaatcaaa
atcaaatttcttgatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010835XLOC_010835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019300-exon-sc0000323-1491911889:113926..114545TCONS_00019300-exon-sc0000323-1491911889:113926..114545Clytia hemisphaericaexon
TCONS_00019300-exon-sc0000323-1510915933:113926..114545TCONS_00019300-exon-sc0000323-1510915933:113926..114545Clytia hemisphaericaexon
TCONS_00019300-exon-sc0000323-1575043694:113926..114545TCONS_00019300-exon-sc0000323-1575043694:113926..114545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:113926..114545 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0863205	0	0	0	0.116408	0	0	0.207794	0	0.090101	0.524726	0.057489	0.229636	0.476959	0	0.0526013	0	0.265674	0.917606	0.960209	0	0	0.29692	0.0899812	0.278036	0.24814	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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