TCONS_00019290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019290
Unique NameTCONS_00019290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019290 ID=TCONS_00019290|Name=TCONS_00019290|organism=Clytia hemisphaerica|type=transcript|length=2196bp
tgACAGTGAGAAACATTTGACAGATAAGCAACTTGGAAATGAAGTTCATG
ATATTATGGCTAACGGTGCCATCAAAGAAATGGATGTTTTATCGGATACC
TTGGAGAAGGAATTGGTCGATTCTCCTACAAGATCTGATTCTTTCACTCA
TAAATCCGAACTACCTCGAAAACCAGAAGGATTAACATTACAAGAAAACC
GAGAAAAACAAAGGATCCTACAAGAAAAAGGAAAACTTACACCACAATTC
AAGACAAGAATGCCGACACCGACTTTTCCAACAACGGACAACCAAATGGT
GACGTCGCCGACACAAGGTACCATGTCTCTTGACCGAAATGTCGGACGGC
AAGTGGGTAGCCAAGTTAAAAGCAAAGACTCAAATGAGAAGCTAAGGTCG
GAAAGTCTCACAGAAGAAGAGtCTCCTGGTGATAAACCAGAGCTGTCCTC
GCCGAATTCAACGAGCAGTCATACTTCATCAGACTCAAACCAAGCTGGTG
AAGTTGTATTCGAAGGCATCGCAAAACGTGGATCCTTGAAACAAAGGAAC
AataaaatattaaaagatgGCGCTTCTAATTACACAATGAGGCGCTTCTA
CGACGTCGCTAAAGAAGAATTCGAAAAGTTAGAAAAATTAAGAGAGGCAA
TGGAATCAAAACTGCGGATCAAATTACCGGACGACCTACCAGCCTCGTTA
TCGGACGGAATAGTATTATGTCATCTGATTAATCATTTACGGAAAGGAAC
TATACAAGTCATACACGTACCAAGCTCAGGAGTACCGAAACTAACGATGC
CAAAATGTCAAATGAATGTTGATGCGTTTTTAGATGCTTGTAGAAGGGTG
GGAGTTGAAAAGgtGGATGTTTGCACTGCACCAGACATTTTAGAGGAGAA
ATCACCAATAAAATTATGCAGGACTGTAGAGGCGTTAATGCAAGTCATGG
GCGTGGCTCCGCCCCAGATAAGCATCGCCAAACCTACAACGCCTAGATAG
GGTGGTCTATGTAATGGTTAATTAATATAGAGTATGATTTTATTGAATGG
AGAAATAACGGATCAATAGTTGGTACAATTTCACATTGCATTTTTTGGGG
GATGTCGTTCACTGGAGAATGGGAAAGCTAAGGGTTTCACGGTTTATGCT
TTGGAATCGGAATAAGTTAATTATACTTTCATGGCATTTGGTGGTTTTCA
TTGGATTTAACCATTCAATGTACGTTCAAGCCGTGGTGTGGCGACTGTTT
GTTCTTCAAGTGCAGATTTTCAATTCCGTCTAACTGGTTCAGGATATTCG
TCAACAACGCAATTAGCTAATCCTGGGATAGTATCACTTCTTATGTGGAG
GTCACTCTTTTTAGGCTTATGTTGTGACCTCtgttttttttaccaaaaaa
acaaATACACATGTATGACTCAATGCCTGAATAAAACTGTTTTACAAAAT
AACTTATCTTTAGAACTTTTCAAACCAATTAAgattcacttttgattttt
ttgagcATCACTACAATAACAAATgatgaacattttaaaaaggtttcTTA
AAAGACGGTTATTAGTTATCTAGCACTGAATACAAATTGCGATAGAAATA
TTGCTACAAATAAATTCTAAGCGCCGaatgatttttatttatttttattt
tctggttgaacttcgtttaaaaattttttgataatattgatgatgatgat
gtttaatttttttacaatttactTTTCAATTCCACGCTCTATTACACCTT
ATAGAAAGTTATAGCTAATTATGAGAttatttttaagctttttacgTTTG
TACTTTCTCCGTTAATTGATGCGTCGTCGttacaattttaaaataatttt
gatttccctTGCTAGTTTTAGCCGTAATTCATTCATACAGTATTGAATAA
GGTCAACTTCCCAAGAAGTTCAATACTATTTTCATAGAAACTTGAAACCT
TGATTCGCGCTATTCCAAGATAGATGTTGATCGACATGTAAAATAAAGGA
CCTTAACTTACGCATATATCAATAATTTGGTCGTCCCCTtcattttttca
caaaacttATTCTACAACTAATGAACGAAAGATGATGTTATAACTAATGT
TAGTATTTTTTATACCACAATGAACGAGAACACCACGAGTATTATATTTC
CTAGCTAGAATACTATTTTGATAGCCTTCTTATCTATCTAAGTGCC
Run BLAST on NCBI

transcript from alignment at sc0000323:349437..360960-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019290 ID=TCONS_00019290|Name=TCONS_00019290|organism=Clytia hemisphaerica|type=transcript|length=11524bp|location=Sequence derived from alignment at sc0000323:349437..360960- (Clytia hemisphaerica)
TGACAGTGAGAAACATTTGACAGATAAGCAACTTGGAAATGAAGTTCATG
ATATTATGGCTAACGGTGCCATCAAAGAAATGGATGTTTTATCGGTATGT
TCAGTCTTAAAAATGCTTTAACACCATCACTGCCAACTACGAGTATACTC
GTAAAATACCAGTAGTTATTCAAAGGACCATAACTTTTGACACAGAAAAC
TTGTGTTTGCCTTTTCATTGTATTTTTGAAATCTACGTGGCATTTTGCGT
TGATTGGTGTACAATTAATTCACTTAAAGTAAAACTCAGACCATCGGAGC
CTCAGAAAGTCAAATTTTCGATAAAATTCCAAAAAGAATTCAATTTCTGA
AAAAAGGTAGTGTGCGTGTTAAACATATCAATTTTGTTGGCCGATGCGAA
AGAAAAAACAACCAAAAATATGTTAAGGAATTTTTAAATAATTACAGCAA
GAATTTCTCGAGTTTTCTTGATAAATTTTCAAAACCAAGCCGATAAATTA
ACCTGTGCAAAGCGCAATGTAACATTGTACTTGTATTTCATAGATCTATT
GAAATGATAAAAGATCTCTAAGATGACATGTTTTTAACTGAACGATGTAC
ACTTTTTTAATAAATAAACTGACCTCATTGCTTTGAAAATCGTGGAACAT
TACATTCTCAGCTCAGCTCAAGGATGATAGTGATGTGATTTTAAATCGAC
ATGAACATTATTACTATTATCAGTTGAATGAGTGAGTGAAACATAAAAAG
CCTTGTGATGTGTAACCAAATCAAAATAAAACACAATTTATAAAATAAAA
CACAACCTCTTCCGTGTCCTTTTTAAATTAAAATGCTTTAACAACTTTAA
CAACTAATCAGTTGAATGAATATGTTTTTAAATTTTGTATCTGTCTGACT
TTTTTAAGGATACCTTGGAGAAGGAATTGGTCGATTCTCCTACAAGATCT
GATTCTTTCACTCATAAATCCGAAGTAAGATTGCTATTTGATTAAAGTTT
TGATATAAGACCCATAGATACCTCTTAAAACAGTACATTGGGTTATTTGT
ATTCGGGTAAAGTTTATTTGGCAAAGGTAAAAAAACCCTATCCAGTGAAT
AAGCAAGGTATTTTGTGAATTCTCGGTTATCAGAAACTTTAATTGATGCT
CGTCACGTTTAATATAACAAGCTTTCTAAATTGTCAAACAACAATTAAGG
AAAAAATTCTATTTTACCTAGAGCTCCTAATATTTCATCAAAACTAATAT
TAGCGAGTTTATGTATCGGAGTAAATCGAGAGCGACGGTAAGAAGGCAAC
GGAAAATAAAGTCGATAGTTGATTCACGGCTTTTTACCGCCTTTGCTGAC
CTAAACAGACGGTATTTGGGTGTTTTTACAGTCGTCAAGCAAAGTGGACA
GCAATTTCGGGGACATGTCAACTTTACCGTCCTTCTTCGATCTATCTCAA
ATACATAAACTCGCTAGCTGGTGATACTTAGTTCTTAAATTATATCTTAT
GTAATGCCTCATAAAAATAGTGTAACTTACCTACTCAACTTGTTTAGTGC
AAGAGAGTTGATCTAAAGCTTCCATAATCTCTACTAACCTAGCCCAGGAT
CAACTTAAGGCTCTTTAATCGCGCTCTTCTTGTCTGCTTTACTAGAAGCG
ACTTCAAAAATTATCAGAAAACTAACTTCAGTCAGAAGAAGACTCAGGTC
TACTACTAACCTTCTACTAATCTCTTTTTCATTTAATCAACTAACACAGC
TGGGTATGATGTCTTCTTCTGATGGTAATGTTCTTCTTTCTCCAATCAAA
CCCAAGCTACCTCGAAAACCAGAAGGATTAACATTACAAGAAAACCGAGA
AAAACAAAGGATCCTACAAGAAAAAGGAAAACTTACACCACAATTCAAGT
ATGTGAAAGACAAGGATTAATATGTTACAGTTTGTCCAGAAAAAAGTGGA
GAAGAATATATAAATTAAAAATCCATAAAATAATTTATTTATTCTACAGT
GGAAACTCCATAATTCGAACCTCTACAACTCCAGTGTTTCCTGGACTCGA
ACAAGTTGTTTTGTCCCTTCAGTTAACACGCCTGATAAGACTTACTCCTT
TCTCTAAATCTGCATGTTTAAAATAGGGTTTACAAGATTGGTTTTATTGA
CATTGGACTTTTTACAGGACAAGAATGCCGACACCGACTTTTCCAACAAC
GGACAACCAAATGGTGACGTCGCCGACACAAGGTACCATGTCTCTTGACC
GAAATGTCGGACGGCAAGTGGGTAGCCAAGTTAAAAGCAAAGACTCAAAT
GAGAAGCTAAGGTATGAACATTTTTCTGTGATAGACAATAAAGAAATCTA
TTACAGTGACAGTGAGAAAGGTATTTGCTTAACGAAAGTTTTGAGAAAAG
GTTTGTCCCAAAAGGGTTATAGGGCCTTAAAAGTAAAGTACACTACTTCT
TCCGGCACAGACTTAAAACTCTATTCCAAACTTTCGTAGCAATCAACAGT
TAAGAGTTGAGTTATAGTATATAAAAGTTTAATCCAATTTTCAATTCTTT
GTTGTTTGTTTGTAATATTTTAGTAGAAAGAATAGTTTGATGCGAAGAAT
GTCATCCTTCTTTGGAAGAAACAAGAGGTAAATTAATGAGAAGGTTGTTT
ACTTTATAAATTTACCAAAGCTAGTATGTATCTTTGTATCAGGAATTTAG
GTTGCAGCTTTTTGTTCTCAGTTTAGAAGTACACGTGAAACAGTAAATTT
CGACTTTTTTTTGTCAGGCTTAATGCTTCCCTTATTCACTTTATTGGATC
AAATTCAGCATTCGGCTTTTTCTAAAATCTAAAGCTGGGGTGCTACTTAA
TTTGTTATTAAGCCAAAATTGAGCGACGCTTTCTTATAAGATTGTTCTTT
AAACAAGCATGTATAGGCTCTCAACAGAAAAATCTTGATGAATACAACTG
ATATTCTTTTTCATAATTTTATTGTTTCAGGTCGGAAAGTCTCACAGAAG
AAGAGGTTTGCTATGCTTATAATGTTCACGTTCTTTCCCATTATATACTA
TCTACTTTACCTATGCTTCGGCTTTTTCTTTGTGTTCTTCTAACTTCTAC
TAACATTAATTCTAAACCGTTGAATAACAGAAAATAACCGGAACTAAACC
TTACTAACTAAAATCTTACAACCACTAATTTACACATACTAATCGAAATT
TATTAACTGTCAATCAAACACACTACTACTAATTTTAAAACCAAAAATTG
TTACAGTTGCCTCGCTCTAATCCGAATTTCTATTATTCAAATCTTTCTGT
AATTTGAGCTAAAACATTGGTCCCCTTTCGCAGTTGAAAAGTAGTGTAAA
ATACTCTCTGTAATTCGACTATTTCTATAACTCAAAGAAACGTCTCACTT
TAAGATCGAATAAGAGAGAGTCAACAGTACGCAATTTATGTTTTTCAGTC
TCACTGAAACCCTATAGTTAGACATCACTGGGTGTTTACAAACGCTAATA
TAAACTAACCTGCTTACTAACCAAAATATTCATCGAAAAGAAATACATTT
TCAAATTTAACTCTAACTACCAAATCATACTACCAAAAGAAGTCAAAATC
TAAAAATGTTAAATTCTTTTTCCAGAAATTAAATAACATTGCAGCACGCA
AAGAACAACTGTTAAAAAATAAAGAAGAAATAATCAAGTCTAGACAACGC
TTAGAACTCATTAAATCCAAAACTTCACAACGAGATAATAATATGCTGGT
GAGTTTAAGCATAACCATAACTTTCAAATTCAAGAAAGCTTTCCCTATTG
GTGCATATGAAAGTGGCATCTCAAGAGAGTCATGTGTGTAAAAATCTCTA
TCTCAAAATGCCTTGTCTTACGAAAGACCAGAGAGTTTGAGTTTATCTTG
AGTATGCCAGAATTAATAATACTTTCCCCAACGGATAAATTTTCTTCATA
AAAAATTGTGTCAGTAATTTGCGCCACCTGACCCTTTAACTGTATCACTT
TTCTGCTCGTTTCCTTTAGAAAATGTAGATAAAAACGATCCGCCATCTTT
TTAAAAAAACAGTTTATTGTTCGGGTTAAAGGTCATAGAGGCCATGTAGA
GACATAGCGAAAATTCTTTTGACAGCGCTGTGTCATCCGGCCCCGGGTTT
AACATCTGAACCGTTATCGTCTTGGAAACAATTTGTGACAAATCTAATGA
AAATATTTTGAAAGTCTCACATACTTATTAATATTCTCATCCCTATATAA
ATTCTTTCTTTTTAGTCTCCTGGTGATAAACCAGAGCTGTCCTCGCCGGT
AAGAAATAAATCATTTTTTGGCTTTTTGAATGTTATGTACGGTTTTTACA
TCGTTCTTTCGGAAATTTTGGCTGATAAAAAGATTCTAACCTGTGCTCAA
AGCTACTTTTGCTAGAGCGAGGAATTTGAAGTTTCAACGTCGAGGCATAA
TTTTCAAATTCTTATAGGTATAGTTAAAATGTTTACTTTAAAGTTATGTT
AACTGTCATCTGTCTAGTAAAAGAAACTGAGCTCAATATAGAACTCCTTT
GATGTTAGTATGTGTCAAAGAAAATTTTCGGTCATCCGGTATAGATTGTA
AACTGGTTCGTTTCATCACCAAATGATAAAGTGATTCGAGATACTAATAT
TTTTATCGTTTCCCATTTGTTTTAGAATTCAACGAGCAGTCATACTTCAT
CAGACTCAAACCAAGCTGGTGTAAGTCTTTTTATAAAACTCTTCAATGAT
TGCCTTTCCATTATTAAAACTGTCTGATAATTGGATGGGTCACAGGCAAG
AAACAACAAAAAAATTATTTATTGATATATTTTCTCTCTACTCTATGATC
TATCATCTTCAGATCTACCATAACCATTTGTAAATGCTAGATGTCATATG
ATAGGTTATGAGAGTTATGTTAGATCTGAAGATGCTATACCATAGAGTAG
AGAGGAAATTTATCAATAAATAATTTTTGGACCTACCTTAAGGTAGTCCT
TTAAATTAACCCTTGTCCGTCCGTTTGTTCGTCCGTTCGTCTGTTGCCAG
CTTTTCTCGGGATCGGCTTATTAGTTTTTTCAAATTTTTTGCACAAAGAT
GCAAAATGGCAATGCCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAA
AATTTTCCGGCCGAAAATGGCGGAAATATGCCGGAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTGGCATTTTCTCGAGATTTTATCATTAGTTTTT
TCTGACTTTTTGCTCAAAGATGCGTATTAACAATGCCCTAAACATGGCCG
AGTCCGAAAATTTTTTCCGGCGGAAAATGCCTGAAATATGCCGGAAAATC
GCCGTTTTTCTAGATTTTCATAGGACTTTTTCCTTATAATTGGTTGTTTT
TTCATTCAAAAACATTATTAATAGCAATGCCCACCATTAAGCATGTTTCA
ATTTTCAATAAAATTGTATTTTGAAGCCAGAACTATTTTAAAAGTCGCCG
GAACAACCTATTTTCGCCGGAAAGACAGTATTTCTTGAATTTCTCGAGCT
ATACTTTATATATTTTTATGAAATTTTGCACACTGATGCAATATGACAAT
ACCTAAAATGTGACGGAGCCCGATTTTCGAAAAACATTTTTTTCCGACCA
AAAATGCCGGAAATATGCCGGAAAAACCGGTTTTTTGACTTTTTCTCGAA
TTTTCATTTTTAGTTTTTTCTGATTTTTTGCAGAAAGATGCGTATTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATGCTCACCATCAAGCATGATTCAATTGTC
AATAAAACTGATTTTTTCGACCAGAACTTCCTATTTATTTTTTCCCTACA
ACCCTTCCCTCTCCCCCCATCAACAATCAATGATGAATTTATTGTGTTGT
GTAAATACTAAACGCTAAACGCTATATTTTCTGACTGATTTTTTTCATTT
TTCTTTTCGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGC
ATGTTGCTTGTTTTGTTGTTTCTTGCCTGTGATCCATTCAAATATTACAG
TTTTAATAAGTCTTTTTGTCTTTACAACACTTAGCATGTGCGCCCTTTTG
AGTTAAATGAGAAAATTATGTGCCATTATCTCCAATCGCGAAATAAGGTT
GTAGAACCATGCATTCTTACACTTAATCAAAGGGTTTGGGGAGTATATCA
GGTTCGTTAGTGACGTAGAATTTCTTAACCTTTCGCCATTCGTCCCTTTC
AAACCCAAACCCGATTCTCCCCAATAAACAAAAAAAGGTAATTGCCGTTG
CTCAGGGTAACCAAGGTATCATTTGGTTGCAAAACGCAGTTTATATATTC
AAACTTCAACGCGTTTTATGAAATGATGTAGAAAACCTACATTGCTTCCA
AAGTTTCAAACACTAAATAAACACATACATATATGAGTCTAGTATTCCTT
TTATTTATCTTGTCCTTTAATTTCTTCCGTAGGAAGTTGTATTCGAAGGC
ATCGCAAAACGTGGATCCTTGAAACAAAGGAACAGTAAGTTTTTCTTTAG
TTGAGTGTCTTATTTCAAAGCTCTTGAATTTCGCGAATGACAGAGAAGGA
ATCTTTATCCTATTAAAAGTAGTAAGGGCTTATCCGATAAATTTAGTTAC
CGCAGAAAATTTCTGTAGTAGTAAAAGTATTGGTATGTATAACATGTATA
GATTTAGCGGAGTGTACAGCGTCATTAGTCTTTTTTCAACCTTTCTGTTT
CTACATTCTTTGATGACCAGATTTTATATGAGATTTTATGAAGATAAAAG
ATATACTTCAGTTTTTTTGTGCTGTATTTGGAAGGTCTTTTTGGATCTAA
GGCATAGGGACCATTCAAAAGGTATGTACGCTCTGAGAGGGGGAGGGGGT
CTTTCGAAAAGCGTACGAAAACGTACGCGGGGAGAGGAAGGGTCAATCAA
GAAGTGTACGTACGCCTTGCAAACTTTTTCAAACTGTTTTTACAAGTTTT
TTTGTAACGTTTTATTTGAAAAAACTAAACAAAGTTTTAAGTCTTCTTTT
TTCATTTTAAAAATATCTAGAAGAAGTTTCAGCGCAAATGCGGGGATACG
TACGTACTTGAAGGGGGGGGGGCGTACAAGGGGATGGGGTAGTCAAATTT
TGCCTTCATTTAAGAGTACGTAGTTTATGAATGGTCCCATAGTAGCGAAA
ATTTTACAATTGATTTGAATGATTTCTTTTTGTAGCTGAAAGTTGTATAA
GGCATTGGCGAGCCTCCACCCCTAAGCATGAAAAGAAGTTGGGAACAGTT
CCTAAATAAATAGTAATGAAAGTGAATATTTTAGCTCTTAATTGAAGTAT
TTTTTTAGAAAAAGTCATTGCATTGCAGCAATAAAACCCAATTTATCTGA
AATCGAGTCTTAACAAAGTGGTATCTTACGGCAGTCCCAACTGCATCAGT
GGCCTTCAATAAAGAATCTTAGTGCGGTAATCAGCGTTGTCGAAGTTTTT
AATTAGATCATTAGCAACTCCTTAGTCATAATTTAGGCTATAACTCACTT
GAATAGTTTGTAAATAAGTTTTTATTGTTTTTTATACAAAATATAAAATG
TGAATAAAGATCTTGCTTCCTGGCAATTGTGTTTTGTTTTGCCTTATATT
TAGGTCTTAGCTGGAATCGCCTTGCTTTTAGTTTTTGTCTTGTCTTGTTT
TTTTCAGAATAGAAGCTAGATCGTTTTGATAAATAATTAACAATAATAGT
CTTTAGATATTAAAATTTTCAGCAACAAAGGCAGTACTGGAAGAAAAAAT
CGAGCTTTTTTTTACAAAGTTTCTTTCATCATTAATGGCATGATGTATGG
TTTAATTCTTGTTGTAGATAAAATATTAAAAGATGGCGCTTCTAATTACA
CAATGAGGCGCTTCTACGACGTCGCTAAAGAAGAATTCGAAAAGTTAGAA
AAATTAAGAGAGGTATGTATAATCACCACTGACCTTTATATATCTCTGGA
CCAAGCTATATCCGCCATCTTTGATCGAAGTTTTTTTTTTAAGTCGGTAC
CCGCAAACAAGGCATTGTAGTGTTTGAAACTTTGCCTAACGACAATCGGC
GCTACATCATTAGTGTACAAGTGAAACTAGATCTAGCGCTCTCTCCGCGG
GTACCAATTTCAAAAAAAACTCCGATCATAATATTTTGGTTGGCCAGGAT
TGAGTAACTTCGTCCAGAGATATATAAAAGTCAGTGATAATCACCATGTC
TGTTGATTTGACTTATTTGCCTTGTTGCTTCCATGGGCAACGCTGCTTCT
TTTAACAAAACTGTCAACGATTCAACACGCCATTTAGTCGTTAATAAATT
GCTATTTTCCAGTTTTATTGGATTGCTAATTTATTGATGCCGTTGAATCT
TTTTACGTATTTTGTAATTTAATTTGATTTTCAATTGAGTAACTGAAATA
CATATACAGATTTTATTTTGAAAAAGTCTCAACAAACTTCAGACCACATT
ACACTTCTAAAATGTAAGTATTTCAATACATGTTACTTCAATGTTCTGAA
CTCTTTCCTCGTAGGCAATGGAATCAAAACTGCGGATCAAATTACCGGAC
GACCTACCAGCCTCGTTATCGGACGGAATAGTATTATGTCATCTGATTAA
TCATTTACGGAAAGGAACTATACAAGTCATACACGTACCAAGCTCAGGAG
TAGTAAGTTTATAATTTTAAACCTTTTTTTTATCCTCCTGTTAGTCAATT
CATGTTTTTAATGTGTTACAGCTAAAAACATACCGGTCTTAACTTCTAGT
CTGAATTTCAAAACATTCGAATCCAAACATACAAGCATTATAGAAAGAAA
GATGGCGGACTAGTCAGCTCAACATGGACACGCTTTCTATTATGCATTAA
GGGAAATAATTTTCTCGGAACTTATTTTTGTGGAACTTATTTTCGCGGAG
CAAGGGTACTAAATTGGCGTATTTCCGGAACTAATTTTCGCGGTAGACGC
CCAAAAACGCGAAAATAGTTTCCTTAAGGTATAGGAAGCTCGATTCAGCC
AAATAGCCAAAAATCAGTGGTTATAGCCATATCGAAAACCTCGGTACTCT
CTCTACCTAGGAGACTTGATGCTGCTTGTCTCGCTTGGCATTTCAAGCCA
TGAATCCTTGACTTGCTTCTGCTTTCCTTCACTATGATTTCTAACTAAGT
TTTTTATATTCTTTTCTTCTATACAGCCGAAACTAACGATGCCAAAATGT
CAAATGAATGTTGATGCGTTTTTAGATGCTTGTAGAAGGGTGGGAGTTGA
AAAGGTATGGAATTTATTTATAATAAAAGAATTCATTCAAAATAAGAAAA
CGAACGATACTCGTCCGAAAGATTTATATTCTAGCCCAACAAAACATAAA
ATCTGTTTTATTCATGTTATTGGTATGGCATGTGATATACCGTAAGTCCT
AATTCTGACACCCTTCTTTAGAGATAGAAATAATAGGAAGATTGGGATCA
CTTATAGACAAAAAATTTTTTCTTCTCTGATTGCTAAGCACAGAAAAATA
GTTTCCATCAGCGATTCCAACATTCTGATTATTCCTATCTTTAAAGAAGG
GTGTCGAAATTAGAAGGGGGATGTCGATATTAGACCAACTTACGGTACGT
TAGAGGAAATTTTCGATTCAATTCTCTCGAGCTTTGTACAGTGCCTTTGA
AAGAAAGTTCGAAATAAGTTAGAAAAATAGTGAGATATTTTGAGAATATT
TATATAATTCGTGTTCCGCTTTTTATGAATCGATTTGAAATTTACGTTTT
AAGTAAGATAGATTCATCAAATTTTTCTATACAAACATTAAGAATACCTA
GATTTGCAGATTAGTTTGATGTATCTTTCATTTTTTTCAGGTGGATGTTT
GCACTGCACCAGACATTTTAGAGGAGAAATCACCAATAAAATTATGCAGG
ACTGTAGAGGCGTTAATGCAAGTCATGGGCGTGGCTCCGCCCCAGATAAG
CATCGCCAAACCTACAACGCCTAGATAGGGTGGTCTATGTAATGGTTAAT
TAATATAGAGTATGATTTTATTGAATGGAGAAATAACGGATCAATAGTTG
GTACAATTTCACATTGCATTTTTTGGGGGATGTCGTTCACTGGAGAATGG
GAAAGCTAAGGGTTTCACGGTTTATGCTTTGGAATCGGAATAAGTTAATT
ATACTTTCATGGCATTTGGTGGTTTTCATTGGATTTAACCATTCAATGTA
CGTTCAAGCCGTGGTGTGGCGACTGTTTGTTCTTCAAGTGCAGATTTTCA
ATTCCGTCTAACTGGTTCAGGATATTCGTCAACAACGCAATTAGCTAATC
CTGGGATAGTATCACTTCTTATGTGGAGGTCACTCTTTTTAGGCTTATGT
TGTGACCTCTGTTTTTTTTACCAAAAAAACAAATACACATGTATGACTCA
ATGCCTGAATAAAACTGTTTTACAAAATAACTTATCTTTAGAACTTTTCA
AACCAATTAAGATTCACTTTTGATTTTTTTGAGCATCACTACAATAACAA
ATGATGAACATTTTAAAAAGGTTTCTTAAAAGACGGTTATTAGTTATCTA
GCACTGAATACAAATTGCGATAGAAATATTGCTACAAATAAATTCTAAGC
GCCGAATGATTTTTATTTATTTTTATTTTCTGGTTGAACTTCGTTTAAAA
ATTTTTTGATAATATTGATGATGATGATGTTTAATTTTTTTACAATTTAC
TTTTCAATTCCACGCTCTATTACACCTTATAGAAAGTTATAGCTAATTAT
GAGATTATTTTTAAGCTTTTTACGTTTGTACTTTCTCCGTTAATTGATGC
GTCGTCGTTACAATTTTAAAATAATTTTGATTTCCCTTGCTAGTTTTAGC
CGTAATTCATTCATACAGTATTGAATAAGGTCAACTTCCCAAGAAGTTCA
ATACTATTTTCATAGAAACTTGAAACCTTGATTCGCGCTATTCCAAGATA
GATGTTGATCGACATGTAAAATAAAGGACCTTAACTTACGCATATATCAA
TAATTTGGTCGTCCCCTTCATTTTTTCACAAAACTTATTCTACAACTAAT
GAACGAAAGATGATGTTATAACTAATGTTAGTATTTTTTATACCACAATG
AACGAGAACACCACGAGTATTATATTTCCTAGCTAGAATACTATTTTGAT
AGCCTTCTTATCTATCTAAGTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010829XLOC_010829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019290-exon-sc0000323-1575043694:360867..360960TCONS_00019290-exon-sc0000323-1575043694:360867..360960Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:359987..360052TCONS_00019290-exon-sc0000323-1575043694:359987..360052Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:359063..359154TCONS_00019290-exon-sc0000323-1575043694:359063..359154Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:358650..358793TCONS_00019290-exon-sc0000323-1575043694:358650..358793Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:357956..357980TCONS_00019290-exon-sc0000323-1575043694:357956..357980Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:356663..356695TCONS_00019290-exon-sc0000323-1575043694:356663..356695Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:356241..356285TCONS_00019290-exon-sc0000323-1575043694:356241..356285Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:354127..354178TCONS_00019290-exon-sc0000323-1575043694:354127..354178Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:352699..352793TCONS_00019290-exon-sc0000323-1575043694:352699..352793Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:351959..352096TCONS_00019290-exon-sc0000323-1575043694:351959..352096Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:351357..351434TCONS_00019290-exon-sc0000323-1575043694:351357..351434Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1575043694:349437..350770TCONS_00019290-exon-sc0000323-1575043694:349437..350770Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:360867..360960TCONS_00019290-exon-sc0000323-1510915933:360867..360960Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:359987..360052TCONS_00019290-exon-sc0000323-1510915933:359987..360052Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:359063..359154TCONS_00019290-exon-sc0000323-1510915933:359063..359154Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:358650..358793TCONS_00019290-exon-sc0000323-1510915933:358650..358793Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:357956..357980TCONS_00019290-exon-sc0000323-1510915933:357956..357980Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:356663..356695TCONS_00019290-exon-sc0000323-1510915933:356663..356695Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:356241..356285TCONS_00019290-exon-sc0000323-1510915933:356241..356285Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:354127..354178TCONS_00019290-exon-sc0000323-1510915933:354127..354178Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:352699..352793TCONS_00019290-exon-sc0000323-1510915933:352699..352793Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:351959..352096TCONS_00019290-exon-sc0000323-1510915933:351959..352096Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:351357..351434TCONS_00019290-exon-sc0000323-1510915933:351357..351434Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1510915933:349437..350770TCONS_00019290-exon-sc0000323-1510915933:349437..350770Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:360867..360960TCONS_00019290-exon-sc0000323-1491911889:360867..360960Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:359987..360052TCONS_00019290-exon-sc0000323-1491911889:359987..360052Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:359063..359154TCONS_00019290-exon-sc0000323-1491911889:359063..359154Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:358650..358793TCONS_00019290-exon-sc0000323-1491911889:358650..358793Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:357956..357980TCONS_00019290-exon-sc0000323-1491911889:357956..357980Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:356663..356695TCONS_00019290-exon-sc0000323-1491911889:356663..356695Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:356241..356285TCONS_00019290-exon-sc0000323-1491911889:356241..356285Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:354127..354178TCONS_00019290-exon-sc0000323-1491911889:354127..354178Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:352699..352793TCONS_00019290-exon-sc0000323-1491911889:352699..352793Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:351959..352096TCONS_00019290-exon-sc0000323-1491911889:351959..352096Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:351357..351434TCONS_00019290-exon-sc0000323-1491911889:351357..351434Clytia hemisphaericaexon
TCONS_00019290-exon-sc0000323-1491911889:349437..350770TCONS_00019290-exon-sc0000323-1491911889:349437..350770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:349437..360960 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.4646e-10	0	0	7.43858e-09	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00019290 vs. Swiss-Prot (Human)
Match: LRCH2 (Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Homo sapiens GN=LRCH2 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.641e-28
Identity = 64/155 (41.29%), Postives = 102/155 (65.81%), Query Frame = 2 
Query:  515 GIAKRGSLKQRNNKILKDGASNYTMRRFYDVAXXXXXXXXXXXXAMESKLRIKLPDDLPASLSDGIVLCHLINHLRKGTIQVIHVPSSGVPKLTMPKCQMNVDAFLDACRRVGVEKVDVCTAPDILEEKSPIKLCRTVEALMQVMGVAPPQISIA 979
            G+  R +  + + +        +TMRR  +  +EE E++ +LR  +ES+L++ LPDD+ A+L DG+VLCHL NH+R  ++  IHVPS  VPKL+M KC+ NV+ FLDAC+++GV +  +C    ILEE+  +K+  TV+AL+++      Q+S+A
Sbjct:  611 GLKPRSAFSRSSRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSVA 765
The following BLAST results are available for this feature:
BLAST of TCONS_00019290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRCH21.641e-2841.29Leucine-rich repeat and calponin homology domain-c... [more]
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