TCONS_00019287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019287
Unique NameTCONS_00019287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019287 ID=TCONS_00019287|Name=TCONS_00019287|organism=Clytia hemisphaerica|type=transcript|length=1876bp
ATTTCGCTTCATTTACCTAAAGATGctatttttagtttgaaaagaTGAAA
TTGTAATGCATAActccaaaaatatttaattCAAGGAAGTTTATATAGTA
GTTTTTGAAGGATGAAAGATGGAAAGtgatttaattttgttgaattCACA
CATATAGCTATAACAGACTCTGGCAAAAATGCTATTATAGTCATCAAtat
taaaatatcttttttgaacTTGTTGGCTCTCGTCACTGGGAGAGGGAGAC
ATCACAATTTCATTCCCAAGAAAGAAGAAACGAGACTATTTGGCGAAGAT
GATACTTGgtgataaaagaaaaatcaaatattgGCTTGATGGTAAACAAG
TCAGTGTAAATCATAGAAGGTTCGGCAGATGCGTTTGAAATACAAAGTCG
AATCCATTGAAACATCTGATCACGTTGTAACAAAAATCACACCATTCTTT
GTCCCCGCATCAAGCTCAAACCTTGTACGGCAAGATTCGCATGAAACTTT
CACAACAACTGAAGACCCTTATGAAAACTCACTAACACATAAACACACAC
CATCCCATGACCCATGTAAGGATGCTAACAAGCTCGATTCTTTGGATTTA
CTCACAGAGAGTGTTTCTCAAATCTATTTGTCTGGTTCATGGAGACAAAG
TGGTAAAGAAGAACTTAGCATTAACGAAGACAATAATATTAGTAGTCGAG
ACNACAGACTCTGGCAAAAATGCTATTATAGTCATCAAtattaaaatatc
ttttttgaacTTGTTGGCTCTCGTCACTGGGAGAGGGAGACATCACAATT
TCATTCCCAAGAAAGAAGAAACGAGACTATTTGGCGAAGATGATACTTGg
tgataaaagaaaaatcaaatattgGCTTGATGGTAAACAAGTCAGTGTAA
ATCATAGAAGGTTCGGCAGATGCGTTTGAAATACAAAGTCGAATCCATTG
AAACATCTGATCACGTTGTAACAAAAATCACACCATTCTTTGTCCCCGCA
TCAAGCTCAAACCTTGTACGGCAAGATTCGCATGAAACTTTCACAACAAC
TGAAGACCCTTATGAAAACTCACTAACACATATCCACGCACCATCCCATG
ACCCATGTAAGGATGCTAACAAGCTCGATTCTTCGGATTTACTCACAGAG
AGTGTTTCTCAAATCTATTTGTCTGGTTCATGGAGACAAAGTGGTAAAGA
AGAACTTAGCATTAACGAAGACAATAATATTAGTAGTCGAGACAAAAATA
ATTCGAGTTCTCGAGAAAATCAAGACACTCGTTATAAACTTCCAAGTGTT
CCCGTCTCCAATTTAACACAGCCTGCATTAGAAAGCCTCGATCATTCAAA
TGAGAATTACTTGTCTTTGAACGTCAAAAATTGGGTAAACGAGGTAGAAC
AATCATATTTTGGAGGAGGTGAACTACACCAAGGAGATGGGGAGCTCGCG
AAGTCATGGAGCATTTCTGACAAAAACACTTCAACGAGTTAAAAATGTAG
AATATACTTACGCGGATAGGGTAGAGTTGTTTCTTgggtgaattgaaaaa
atttccacgGGAGCCAACAACTAATTCAGCATTTATTTAGTtagtaaaaa
tcttttaatcGTAAAGCCTTATAGGGTCTTAATTTTTAGGCACGCAACTT
TTGAAGGCTTCGTTTTCACGACTtgatatgtaaaaaaaaaacagttcagg
attaaatttatttttcaattgtaTAATTTGACTGTGCTTGGTGATAAAAA
GTACCGTGttataaaaatgaataaatcttgaaaattcttaTTCAAATCAA
CAATGGAAAACCCAGCTGAAAGTTCTATAATATTTCAGACCTCTACTTAT
ATTTAGTTATACACCCCTTTTGCGTA
Run BLAST on NCBI

protein sequence of TCONS_00019287-protein

>TCONS_00019287-protein ID=TCONS_00019287-protein|Name=TCONS_00019287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MRLKYKVESIETSDHVVTKITPFFVPASSSNLVRQDSHETFTTTEDPYEN
SLTHIHAPSHDPCKDANKLDSSDLLTESVSQIYLSGSWRQSGKEELSINE
DNNISSRDKNNSSSRENQDTRYKLPSVPVSNLTQPALESLDHSNENYLSL
NVKNWVNEVEQSYFGGGELHQGDGELAKSWSISDKNTSTS
Run BLAST on NCBI

transcript from alignment at sc0000323:328269..331112-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019287 ID=TCONS_00019287|Name=TCONS_00019287|organism=Clytia hemisphaerica|type=transcript|length=2844bp|location=Sequence derived from alignment at sc0000323:328269..331112- (Clytia hemisphaerica)
ATTTCGCTTCATTTACCTAAAGATGCTATTTTTAGTTTGAAAAGATGAAA
TTGTAATGCATAACTCCAAAAATATTTAATTCAAGGAAGTTTATATAGTA
GTTTTTGAAGGATGAAAGATGGAAAGTGATTTAATTTTGTTGAATTCACA
CATATAGCTATAACAGACTCTGGCAAAAATGCTATTATAGTCATCAATAT
TAAAATATCTTTTTTGAACTTGTTGGCTCTCGTCACTGGGAGAGGGAGAC
ATCACAATTTCATTCCCAAGAAAGAAGAAACGAGACTATTTGGCGAAGAT
GATACTTGGTGATAAAAGAAAAATCAAATATTGGCTTGATGGTATGATAG
TTACACATTACGCCTGATTGCGTCTCCTTTAATGAACTCTCCCAGCCACA
TTGCCAATTTCTCGGTACAGAGTTTCCTCTTTCTCGTGCTTAATGATTTC
AGAATGTTCTGAACCATATTTTACTGAAGAAAGTCTATTATAGTGGGGGT
TATAGTTATAGAGACTATTTTATGAGGCTTTACCTAAAGGTAACACAGAC
CTGGCGACGGGGAGACTGGGGAGACTTTAGCCTCCTCACTTTTTACGATT
GTTCCACTGGGCATGTAAGAAGCTTGTTAAAGTTATAAAGATATTCCATT
TATAGAGGATCGTGTTAGGAAACTACTGTATATTGTCTCAAGCACTGAAT
TGACTTTTCCAAGCGCATGCTGTTGTTTCTAAAACTAGTTTTTTTTCTCT
CTCTTTTAGGTAAACAAGTCAGTGTAAATCATAGAAGCGGNTCGTGTTAG
GAAACTACTGTATATTGTCTCAAGCACTGAATTGACTTTTCCAAGCGCAT
GCTATTGTTTCTAAAACTAGTTTTTTTTCTCTCTCTTTTAGGTAAACAAG
TCAGTGTAAATCATAGAAGGTTCGGCAGATGCGTTTGAAATACAAAGTCG
AATCCATTGAAACATCTGATCACGTTGTAACAAAAATCACACCATTCTTT
GTCCCCGCATCAAGCTCAAACCTTGTACGGCAAGATTCGCATGAAACTTT
CACAACAACTGAAGACCCTTATGAAAACTCACTAACACATAAACACACAC
CATCCCATGACCCATGTAAGGATGCTAACAAGCTCGATTCTTTGGATTTA
CTCACAGAGAGTGTTTCTCAAATCTATTTGTCTGGTTCATGGAGACAAAG
TGGTAAAGAAGAACTTAGCATTAACGAAGACAATAATATTAGTAGTCGAG
ACNACAGACTCTGGCAAAAATGCTATTATAGTCATCAATATTAAAATATC
TTTTTTGAACTTGTTGGCTCTCGTCACTGGGAGAGGGAGACATCACAATT
TCATTCCCAAGAAAGAAGAAACGAGACTATTTGGCGAAGATGATACTTGG
TGATAAAAGAAAAATCAAATATTGGCTTGATGGTATGATAGTTACACATT
ACGCCTGATTGCGTCTCCTTTAATGAACTCTCCCAGCCACATTGCCAATT
TCTCGGTACAGAGTTCCCTCTTTCTCGTGCTTAATGATTTCAGAATGTTC
TGAACCATATTTTACTGAAGAAAGTCTATTATAGTGGGGGTTATAGTTAT
AGAGACTATTTTATGAGGCTTTACCTAAAGGTAACACAGACCTGGCGACG
GGGAGACTGGGGAGACTTTAGCCTCCTCACTTTTTACGATTGTTCCACTG
GGCATGTAAGAAGCTTGTTAAAGTTATAAAGATATTCCATTTATAGAGGA
TCGTGTTAGGAAACTACTGTATATTGTCTCAAGCACTGAATTGACTTTTC
CAAGCGCATGCTATTGTTTCTAAAACTAGTTTTTTTTCTCTCTCTTTTAG
GTAAACAAGTCAGTGTAAATCATAGAAGGTTCGGCAGATGCGTTTGAAAT
ACAAAGTCGAATCCATTGAAACATCTGATCACGTTGTAACAAAAATCACA
CCATTCTTTGTCCCCGCATCAAGCTCAAACCTTGTACGGCAAGATTCGCA
TGAAACTTTCACAACAACTGAAGACCCTTATGAAAACTCACTAACACATA
TCCACGCACCATCCCATGACCCATGTAAGGATGCTAACAAGCTCGATTCT
TCGGATTTACTCACAGAGAGTGTTTCTCAAATCTATTTGTCTGGTTCATG
GAGACAAAGTGGTAAAGAAGAACTTAGCATTAACGAAGACAATAATATTA
GTAGTCGAGACAAAAATAATTCGAGTTCTCGAGAAAATCAAGACACTCGT
TATAAACTTCCAAGTGTTCCCGTCTCCAATTTAACACAGCCTGCATTAGA
AAGCCTCGATCATTCAAATGAGAATTACTTGTCTTTGAACGTCAAAAATT
GGGTAAACGAGGTAGAACAATCATATTTTGGAGGAGGTGAACTACACCAA
GGAGATGGGGAGCTCGCGAAGTCATGGAGCATTTCTGACAAAAACACTTC
AACGAGTTAAAAATGTAGAATATACTTACGCGGATAGGGTAGAGTTGTTT
CTTGGGTGAATTGAAAAAATTTCCACGGGAGCCAACAACTAATTCAGCAT
TTATTTAGTTAGTAAAAATCTTTTAATCGTAAAGCCTTATAGGGTCTTAA
TTTTTAGGCACGCAACTTTTGAAGGCTTCGTTTTCACGACTTGATATGTA
AAAAAAAAACAGTTCAGGATTAAATTTATTTTTCAATTGTATAATTTGAC
TGTGCTTGGTGATAAAAAGTACCGTGTTATAAAAATGAATAAATCTTGAA
AATTCTTATTCAAATCAACAATGGAAAACCCAGCTGAAAGTTCTATAATA
TTTCAGACCTCTACTTATATTTAGTTATACACCCCTTTTGCGTA

Coding sequence (CDS) from alignment at sc0000323:328269..331112-

>TCONS_00019287 ID=TCONS_00019287|Name=TCONS_00019287|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000323:328269..331112- (Clytia hemisphaerica)
ATGCGTTTGAAATACAAAGTCGAATCCATTGAAACATCTGATCACGTTGT
AACAAAAATCACACCATTCTTTGTCCCCGCATCAAGCTCAAACCTTGTAC
GGCAAGATTCGCATGAAACTTTCACAACAACTGAAGACCCTTATGAAAAC
TCACTAACACATATCCACGCACCATCCCATGACCCATGTAAGGATGCTAA
CAAGCTCGATTCTTCGGATTTACTCACAGAGAGTGTTTCTCAAATCTATT
TGTCTGGTTCATGGAGACAAAGTGGTAAAGAAGAACTTAGCATTAACGAA
GACAATAATATTAGTAGTCGAGACAAAAATAATTCGAGTTCTCGAGAAAA
TCAAGACACTCGTTATAAACTTCCAAGTGTTCCCGTCTCCAATTTAACAC
AGCCTGCATTAGAAAGCCTCGATCATTCAAATGAGAATTACTTGTCTTTG
AACGTCAAAAATTGGGTAAACGAGGTAGAACAATCATATTTTGGAGGAGG
TGAACTACACCAAGGAGATGGGGAGCTCGCGAAGTCATGGAGCATTTCTG
ACAAAAACACTTCAACGAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010827XLOC_010827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019287-exon-sc0000323-1575043694:330772..331112TCONS_00019287-exon-sc0000323-1575043694:330772..331112Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1575043694:329681..330221TCONS_00019287-exon-sc0000323-1575043694:329681..330221Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1575043694:328269..329262TCONS_00019287-exon-sc0000323-1575043694:328269..329262Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1510915933:330772..331112TCONS_00019287-exon-sc0000323-1510915933:330772..331112Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1510915933:329681..330221TCONS_00019287-exon-sc0000323-1510915933:329681..330221Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1510915933:328269..329262TCONS_00019287-exon-sc0000323-1510915933:328269..329262Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1491911889:330772..331112TCONS_00019287-exon-sc0000323-1491911889:330772..331112Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1491911889:329681..330221TCONS_00019287-exon-sc0000323-1491911889:329681..330221Clytia hemisphaericaexon
TCONS_00019287-exon-sc0000323-1491911889:328269..329262TCONS_00019287-exon-sc0000323-1491911889:328269..329262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019287-proteinTCONS_00019287-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:328269..331112 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35881	2.30495	1.21983	1.37116	0.459208	0.444694	0.383066	0.230543	0.807042	0.649488	0.366553	0.68035	3.07196	3.13488	2.53271	1.55035	0.431368	0.744991	2.03112	1.18776	1.06689	0.967832	5.76448	4.3049	3.38499	1.40671	0.291824	0.249154	1.96061	2.22854
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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