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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019273 ID=TCONS_00019273|Name=TCONS_00019273|organism=Clytia hemisphaerica|type=transcript|length=2658bp
CGCTACTTTTAATTGGCTCGcgtttttgattgacagatataaTTACGCCT
CCATTGTttgaatttcataaaaaaacaattaatgcTCAGTAAATAAATGT
TTCTTTTAAAAGACTATAAGTAATTACATAGCCTCGTTTTCGTGTTTGGA
AAACAAATATATGCAATGCGAAGGCTGATATCAGTTTTATATATCTCTTT
AACTACCTTTCCGAAAAGACCTCTCTAGGTCGAAAACAGGGTAAATCAGA
AAATAAGTAACACAAAGATTGATATAGAAGATTGAAGCAGTTactgtata
tttttgaaatattgatattACGTTTCTTGGTGACTGACACATGAAATTGA
TAATATAGTTTTTGGATCGAATTACTTTTCTGATCAACTGCTGCTTTTTG
GTCTATTGACATCATTGGTGAAACTGACCAAAGACCACGGACATTGGTTT
AGAATTGTTTGTTTGCTAATCATAACAATCTAAGGAAAATAAACAATCAT
TTTTTCAGACAATTTATAAATGAGGAAAGAAGAAGATAAAATGGCGGCAT
ACATACACACACGCAGTTCTTTTGGAAGTTCCTTTGATTTCCATGCAGGG
CTTAACTTTGATATGCCACACCGAAAACACTCAGCAACAACTTTAGAAGA
GTACAATTACAATAACAATTATCATATGTTCAATGACGAATCTAATCTTT
CAAATAAACATTCAGGAAATGTTGATGTCTTACGGAGCATTTCACAAAAT
TACCAACAACAAACTTCACCGAATGGTCCAGCCAATAATTTCACATTCAA
CCATAATGTTACACATGTTAACCTTATCAATAACAGATTCCAAATAGATA
TCCCAGCAGCACACCAATACAACAACAATACTTCAACACATGACTTCCCA
ATGAGTGATTCAACAACAGCTATGGGTATGAATATATCACCAGTATCACA
TCATACAACAAATAATCAATTCTCAAGATCTTCACCAAACAATGCTGTAG
TATCTCGCCTTAATTCAGCCAGTTCTTACACCGCCAGCAACCATGGAGAG
TCATATTCACCACCTCAACAAATGATGAACAACCAATCACCAAACGATCA
ATTCATGAGCATGTATCATTCATCCCAAGGATACAATCATTCTACCATGA
AATCATCACCAACCGAATATAACATTCCAAGCCTCACTAAATTCCCATCA
CCAGACCATCCGTTACCTATCACATCACCGATCAAATCAAACGAGGAATA
TCAAAACAGTTTATACCACGGGTACAACGAACAAACTAACTTAATGAACA
ATGTTAATGGTAGTATCTCGAACTCAATGCCAAACAACCTTTCCCGTGTA
CCACCAATCTTTACACAACCTTCGGAAAACAAACATCGCGATACAGATGT
TGAACAAGTCAACGATGCACAAAAATGCAAGAACACAATCGAAGGCACCA
AAACTTCAGTTCGCAGATTCAAGAGATGGTACAAAGAACGCTACAACAAA
GAAATTGATATGAACAGCGTGAACAGTTACAATGCACCTGAACTCTTAAA
AGACTTCTTCCTGGATATCCGCGATACACGTCCGGGACGAGTTGGTAACG
AATATGAACCGGTGACTCTGACAACTTACAGAAATGGTCTTCGTCGTTAC
TTTCTGTACCGAAAATGTCCACCAGCTCCAGATAATTTCGATTTAACTGA
TAAAACATTTGACATTGTCAATCGACATTTAGTTACCAAAAGAGACGATT
TAAAACGCAAGGGCAAAGGGAATCATCCGAATGCTATTGAAAGTATCACA
GCTGAACAGCTTGAGAAAATGTGGGCATCTGGCGCTATCGGGACACATGC
TCCTCGGCCCCTACTGCGACTCCAATGGTGGTATAACACTGTTTATCACG
GGGTCAGAGGACGCATGGCTCATCATGATTTAACCACCGAGGACTTTGCA
ATCTCCAGAGCAATGGATGGGAAGATTCTTATGGAATACACCAAGAACGG
CCAAAACGATCCTGCATCAATCTCACCAAAGCTTGAACCaccgaaaaaga
agaaattcaaaggtGTCGTTAAGGAAACGGATGGAGGCGAACGTGATCCT
ATTAGAGCGTTCGAAATCTACAAAGCGCATCGTCCAGAAGGGATTTCATC
GTTTTACTTAACTCCCAAACACAAACCGAAAGGAAACGTCTGGTTCAATA
AAGTCCCAATGGGAAAGAACTCTATCGGTAGGATAATGCGAGAGATTAAA
GCAATTGCTggtatttgaattttaaaagatACattaacaacaacaaaaac
agaaaaaaacatataaattaTTATGCAATGACATACATAGTCTTTTATGT
TTACGTTACatcgtttgtttgtttgtttgtttttaattcttaagtttgta
attttgattttttttaagaaaagaatattttatcCAATGCTTTAGTTTAT
CTTCATTGGAAATGATTGTAAATaattatattgaatattttagaaatgca
aaaattttaatcttgaaaatttaatgatgaaaaatattaacaaatgaaaa
taaagatacTTTCTATTCTTTTTCTTGTCTGGAATTTcagcttttcaatt
tttttttgtctttttcagtCAATAATTGTAACAAGTTATAATTATACCTC
GATGCAGG Run BLAST on NCBI protein sequence of WegA-I protein >TCONS_00019273-protein ID=TCONS_00019273-protein|Name=WegA-I protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp
MRKEEDKMAAYIHTRSSFGSSFDFHAGLNFDMPHRKHSATTLEEYNYNNN
YHMFNDESNLSNKHSGNVDVLRSISQNYQQQTSPNGPANNFTFNHNVTHV
NLINNRFQIDIPAAHQYNNNTSTHDFPMSDSTTAMGMNISPVSHHTTNNQ
FSRSSPNNAVVSRLNSASSYTASNHGESYSPPQQMMNNQSPNDQFMSMYH
SSQGYNHSTMKSSPTEYNIPSLTKFPSPDHPLPITSPIKSNEEYQNSLYH
GYNEQTNLMNNVNGSISNSMPNNLSRVPPIFTQPSENKHRDTDVEQVNDA
QKCKNTIEGTKTSVRRFKRWYKERYNKEIDMNSVNSYNAPELLKDFFLDI
RDTRPGRVGNEYEPVTLTTYRNGLRRYFLYRKCPPAPDNFDLTDKTFDIV
NRHLVTKRDDLKRKGKGNHPNAIESITAEQLEKMWASGAIGTHAPRPLLR
LQWWYNTVYHGVRGRMAHHDLTTEDFAISRAMDGKILMEYTKNGQNDPAS
ISPKLEPPKKKKFKGVVKETDGGERDPIRAFEIYKAHRPEGISSFYLTPK
HKPKGNVWFNKVPMGKNSIGRIMREIKAIAGI Run BLAST on NCBI transcript from alignment at sc0000323:73754..77158- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019273 ID=TCONS_00019273|Name=TCONS_00019273|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at sc0000323:73754..77158- (Clytia hemisphaerica)
CGCTACTTTTAATTGGCTCGCGTTTTTGATTGACAGATATAATTACGCCT
CCATTGTTTGAATTTCATAAAAAAACAATTAATGCTCAGTAAATAAATGT
TTCTTTTAAAAGACTATAAGTAATTACATAGCCTCGTTTTCGTGTTTGGA
AAACAAATATATGCAATGCGAAGGCTGATATCAGTTTTATATATCTCTTT
AACTACCTTTCCGAAAAGACCTCTCTAGGTCGAAAACAGGGTAAATCAGA
AAATAAGTAACACAAAGATTGATATAGAAGATTGAAGCAGTTACTGTATA
TTTTTGAAATATTGATATTACGTTTCTTGGTGACTGACACATGAAATTGA
TAATATAGTTTTTGGATCGAATTACTTTTCTGATCAACTGCTGCTTTTTG
GTCTATTGACATCATTGGTGAAACTGACCAAAGACCACGGACATTGGTTT
AGAATTGTTTGTTTGCTAATCATAACAATCTAAGGAAAATAAACAATCAT
TTTTTCAGACAATTTATAAATGAGGAAAGAAGAAGATAAAATGGCGGCAT
ACATACACACACGCAGTTCTTTTGGAAGTTCCTTTGATTTCCATGCAGGG
CTTAACTTTGATATGCCACACCGAAAACACTCAGCAACAACTTTAGAAGA
GTACAATTACAATAACAATTATCATATGTTCAATGACGAATCTAATCTTT
CAAATAAACATTCAGGAAATGTTGATGTCTTACGGAGCATTTCACAAAAT
TACCAACAACAAACTTCACCGAATGGTCCAGCCAATAATTTCACATTCAA
CCATAATGTTACACATGTTAACCTTATCAATAACAGATTCCAAATAGATA
TCCCAGCAGCACACCAATACAACAACAATACTTCAACACATGACTTCCCA
ATGAGTGATTCAACAACAGCTATGGGTATGAATATATCACCAGTATCACA
TCATACAACAAATAATCAATTCTCAAGATCTTCACCAAACAATGCTGTAG
TATCTCGCCTTAATTCAGCCAGTTCTTACACCGCCAGCAACCATGGAGAG
TCATATTCACCACCTCAACAAATGATGAACAACCAATCACCAAACGATCA
ATTCATGAGCATGTATCATTCATCCCAAGGATACAATCATTCTACCATGA
AATCATCACCAACCGAATATAACATTCCAAGCCTCACTAAATTCCCATCA
CCAGACCATCCGTTACCTATCACATCACCGATCAAATCAAACGAGGAATA
TCAAAACAGTTTATACCACGGGTACAACGAACAAACTAACTTAATGAACA
ATGTTAATGGTAGTATCTCGAACTCAATGCCAAACAACCTTTCCCGTGTA
CCACCAATCTTTACACAACCTTCGGAAAACAAACATCGCGATACAGATGT
TGAACAAGTCAACGATGCACAAAAATGCAAGAACACAATCGAAGGCACCA
AAACTTCAGTTCGCAGATTCAAGAGATGGTACAAAGAACGCTACAACAAA
GAAATTGATATGAACAGCGTGAACAGTTACAATGCACCTGAACTCTTAAA
AGACTTCTTCCTGGATATCCGCGATACACGTCCGGGACGAGTTGGTAACG
AATATGAACCGGTGACTCTGACAACTTACAGAAATGGTCTTCGTCGTTAC
TTTCTGTACCGAAAATGTCCACCAGCTCCAGATAATTTCGATTTAACTGA
TAAAACATTTGACATTGTCAATCGACATTTAGTTACCAAAAGAGACGATT
TAAAACGCAAGGGCAAAGGGAATCATCCGAATGCTATTGAAAGTATCACA
GCTGAACAGCTTGAGAAAATGTGGGCATCTGGCGCTATCGGGACACATGC
TCCTCGGCCCCTACTGCGACTCCAATGGTGGTATAACACTGTTTATCACG
GGGTCAGAGGACGCATGGCTCATCATGATTTAACCACCGAGGACTTTGCA
ATCTCCAGAGCAATGGATGGGAAGATTCTTATGGAATACACCAAGAACGG
CCAAAACGATCCTGCATCAATCTCACCAAAGCTTGAACCACCGAAAAAGA
AGAAATTCAAAGGTGTCGTTAAGGAAACGGATGGAGGCGAACGTGATCCT
ATTAGAGCGTTCGAAATCTACAAAGCGCATCGTCCAGAAGGGATTTCATC
GTTTTACTTAACTCCCAAACACAAACCGAAAGGAAACGTCTGGTTCAATA
AAGTCCCAATGGGAAAGAACTCTATCGGTAGGATAATGCGAGAGATTAAA
GCAATTGCTGGTATTTGAATTTTAAAAGATACATTAGCAACAACAAAAAC
AGAAAAAAAACATAAATTATTATGCAATGACATACATAGTCCTTTTTTTG
TTTACGTTACATCGTTTGTTTGTTTGTTTGTTTGTTTTTAATTCTTAAGT
TTGTAATTTTGATTTTTTTTTTTAAGAAAAAGAATATTTTATCCAATGCT
TTATCTTCATTGGAAATGATTGTAAATAATTATATTGAATATTTTAGAAA
TGCAAAAATTTTAATCTTGAAAATTTAATGATGAAAAATATTAACAAATG
AAAATAAAGATACTTTCTATTCTTTTTCTTGTCTGGAATTTCAGCTTTTC
AATTTTTTTTTGTCTTTTTCAGTCAATAATTGTAACAAGTTATAATTATA
CCTCGATGCAGGCCATTTAAAACAAACTGNCACCGAGGACTTTGCAATCT
CCAGAGCAATGGATGGGAAGATTCTTATGGAATACACCAAGAACGGCCAA
AACGATCCTGCATCAATCTCACCAAAGCTTGAACCACCGAAAAAGAAGAA
ATTCAAAGGTGTCGTTAAGGAAACGGATGGAGGCGAACGTGATCCTATTA
GAGCGTTCGAAATCTACAAAGCGCATCGTCCAGAAGGGATCTCATCGTTT
TACTTAACTCCCAAACACAAACCGAAAGGAAACGTCTGGTTCAATAAAGT
CCCAATGGGAAAGAACTCTATCGGTAGGATAATGCGAGAGATTAAAGCAA
TTGCTGGTATTTGATTCTTTAAAAGAAACATTAACAACAACAAAAACAGA
AAAAAACATATAAATTATTATGCAATGACATACATAGTCTTTTATGTTTA
CGTTACATCGTTTGTTTGTTTGTTTGTTTTTAATTCTTAAGTTTGTAATT
TTGATTTTTTTTAAGAAAAGAATATTTTATCCAATGCTTTAGTTTATCTT
CATTGGAAATGATTGTAAATAATTATATTGAATATTTTAGAAATGCAAAA
ATTTTAATCTTGAAAATTTAATGATGAAAAATATTAACAAATGAAAATAA
AGATACTTTCTATTCTTTTTCTTGTCTGGAATTTCAGCTTTTCAATTTTT
TTTTGTCTTTTTCAGTCAATAATTGTAACAAGTTATAATTATACCTCGAT
GCAGG Coding sequence (CDS) from alignment at sc0000323:73754..77158- >TCONS_00019273 ID=TCONS_00019273|Name=TCONS_00019273|organism=Clytia hemisphaerica|type=CDS|length=1749bp|location=Sequence derived from alignment at sc0000323:73754..77158- (Clytia hemisphaerica)
ATGAGGAAAGAAGAAGATAAAATGGCGGCATACATACACACACGCAGTTC
TTTTGGAAGTTCCTTTGATTTCCATGCAGGGCTTAACTTTGATATGCCAC
ACCGAAAACACTCAGCAACAACTTTAGAAGAGTACAATTACAATAACAAT
TATCATATGTTCAATGACGAATCTAATCTTTCAAATAAACATTCAGGAAA
TGTTGATGTCTTACGGAGCATTTCACAAAATTACCAACAACAAACTTCAC
CGAATGGTCCAGCCAATAATTTCACATTCAACCATAATGTTACACATGTT
AACCTTATCAATAACAGATTCCAAATAGATATCCCAGCAGCACACCAATA
CAACAACAATACTTCAACACATGACTTCCCAATGAGTGATTCAACAACAG
CTATGGGTATGAATATATCACCAGTATCACATCATACAACAAATAATCAA
TTCTCAAGATCTTCACCAAACAATGCTGTAGTATCTCGCCTTAATTCAGC
CAGTTCTTACACCGCCAGCAACCATGGAGAGTCATATTCACCACCTCAAC
AAATGATGAACAACCAATCACCAAACGATCAATTCATGAGCATGTATCAT
TCATCCCAAGGATACAATCATTCTACCATGAAATCATCACCAACCGAATA
TAACATTCCAAGCCTCACTAAATTCCCATCACCAGACCATCCGTTACCTA
TCACATCACCGATCAAATCAAACGAGGAATATCAAAACAGTTTATACCAC
GGGTACAACGAACAAACTAACTTAATGAACAATGTTAATGGTAGTATCTC
GAACTCAATGCCAAACAACCTTTCCCGTGTACCACCAATCTTTACACAAC
CTTCGGAAAACAAACATCGCGATACAGATGTTGAACAAGTCAACGATGCA
CAAAAATGCAAGAACACAATCGAAGGCACCAAAACTTCAGTTCGCAGATT
CAAGAGATGGTACAAAGAACGCTACAACAAAGAAATTGATATGAACAGCG
TGAACAGTTACAATGCACCTGAACTCTTAAAAGACTTCTTCCTGGATATC
CGCGATACACGTCCGGGACGAGTTGGTAACGAATATGAACCGGTGACTCT
GACAACTTACAGAAATGGTCTTCGTCGTTACTTTCTGTACCGAAAATGTC
CACCAGCTCCAGATAATTTCGATTTAACTGATAAAACATTTGACATTGTC
AATCGACATTTAGTTACCAAAAGAGACGATTTAAAACGCAAGGGCAAAGG
GAATCATCCGAATGCTATTGAAAGTATCACAGCTGAACAGCTTGAGAAAA
TGTGGGCATCTGGCGCTATCGGGACACATGCTCCTCGGCCCCTACTGCGA
CTCCAATGGTGGTATAACACTGTTTATCACGGGGTCAGAGGACGCATGGC
TCATCATGATTTAACCACCGAGGACTTTGCAATCTCCAGAGCAATGGATG
GGAAGATTCTTATGGAATACACCAAGAACGGCCAAAACGATCCTGCATCA
ATCTCACCAAAGCTTGAACCACCGAAAAAGAAGAAATTCAAAGGTGTCGT
TAAGGAAACGGATGGAGGCGAACGTGATCCTATTAGAGCGTTCGAAATCT
ACAAAGCGCATCGTCCAGAAGGGATTTCATCGTTTTACTTAACTCCCAAA
CACAAACCGAAAGGAAACGTCTGGTTCAATAAAGTCCCAATGGGAAAGAA
CTCTATCGGTAGGATAATGCGAGAGATTAAAGCAATTGCTGGTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019273-exon-sc0000323-1575043694:74877..77158 | TCONS_00019273-exon-sc0000323-1575043694:74877..77158 | Clytia hemisphaerica | exon |
| TCONS_00019273-exon-sc0000323-1575043694:73754..74129 | TCONS_00019273-exon-sc0000323-1575043694:73754..74129 | Clytia hemisphaerica | exon |
| TCONS_00019273-exon-sc0000323-1510915933:74877..77158 | TCONS_00019273-exon-sc0000323-1510915933:74877..77158 | Clytia hemisphaerica | exon |
| TCONS_00019273-exon-sc0000323-1510915933:73754..74129 | TCONS_00019273-exon-sc0000323-1510915933:73754..74129 | Clytia hemisphaerica | exon |
| TCONS_00019273-exon-sc0000323-1491911889:74877..77158 | TCONS_00019273-exon-sc0000323-1491911889:74877..77158 | Clytia hemisphaerica | exon |
| TCONS_00019273-exon-sc0000323-1491911889:73754..74129 | TCONS_00019273-exon-sc0000323-1491911889:73754..74129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000323 | supercontig | sc0000323:73754..77158 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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