|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019266 ID=TCONS_00019266|Name=TCONS_00019266|organism=Clytia hemisphaerica|type=transcript|length=2134bp
CAGCGATATTAGACGAGATGTTGCCAAGAGGACAATTCTAAATATATTAC
ATGTTGAACTATAAGGGGGGCCATTAGTAATTTAAAGACTGAATAAATAA
TGTTGATAATAAACTTACAACAATTTCACTTAAAAATTACCGAAAATCTA
CATCATTtataatgaataaaaaaattactaTAATAATTTATTTCGATGAG
TGGCGAattattgggctgttccattaaaaatccGTACAGGGAGTGGAAGA
ACCTTCGtaagtcaaaataaaattcttgaGAATGTGAGGGTactccctgg
aaaatggcaaagttTGAAAGAAACCCTCGGAAAAATTTCCTTTTATACTT
TAAAGTGACGGTGGACGAACTGAAACCTGTCTTTTACCTCCTGAAAATTT
TAGTATAactatttaccccctggaaaatgaaaaaataaacactCCTTTAg
atcccctggaaattcttctaaGGTTACTTACCCCCTGGAAACGTTCGTCC
AatccctgtatggagataaaatggaatggcccatttacCACCTTCTTACT
CTCCGATCAAAGGATTCTACTCTGGACACTAAACATTTTCATAATGTATT
ACAACATAGACTTTTgattaaagatgaaaaaatttagaTAAAGCAAGGAA
TTATCATGCACTGGATATAAGATTTTTGCTAATTCCTCATATTCTAGTTA
TGTCGGCAATAAtaattattgttcactctcttTCCCTCAACAAATGATTT
TTTCGTATAGAAAACTCCCACGACAACAATAAAATGTTCCAAGCTGTCAC
AATGATCAAAAACCTCAAACCCCCTGATAAGCTACTAATCAAAGGAAAAA
ATCGACTTTTCGCAAACCCTGCTGAACAAAGTGAAATCAtagcaaaatac
ttcaaaaacCAAGAATAACCAATGCCCATGAGAGACCCTTTTACTGCCAG
CGAAATTAGTAAAACagtcagaaaaatgaaaagaaacaatATTTGGTTGC
GATGAAGTCCCTATAGAACTCATTAAATATGCACTAGAATCAATTCACCA
AAAAAGTGCTACATAAACCTAGCTGAAACAGGGGACGCTCCGAAGGAAAT
AACATATGGTATCCTCAAACCCCTCCAAAAACCCAACAAATCGAAAGGAA
CCCCTGCATACCTAAGACCGATCATTCTCCTATCAGCACTCTTTCAGAGA
TAGATTAGACTACGACATCTCATCATCACAAGCTGCCTACCGAGCAAACA
GATCCACTACTGAACATGTTTTTGCATTGAAATTAGTAATTCCATGTACC
ATAacatcaaaaagtgaagctgtATATCTGCTACTTCTCGACATGAGTCA
AGCCTTTGATAGCCTAAATCGAAACAAGCTATTGAACGATCTTGGAAACA
CCATTACACCAGACGAACTTCACATCGGATCAAAGCTCCTACAAGTATCC
CTCAGCGTCAAAGTAGATAATGCCCTTAGCCAAGAGTTCCAAACCGACAC
TGGAGCACCCCAGTACCTAGCAAAAGCTCTCGAACCAGTGAATAACAAAA
ACCAATTACCAGACCACCCATATGCCCCACACCAAATTACAACGACTGTC
AATGATCATCTATCAGAACATAACTATGTATTAATACCCCAGACGGACCA
ACTGGACATAAAGCTAGAATATGCAGACGACAGACTTAGTACCAGAACAC
CTCAACGACAAAGACCTAACATAAACCAAGATAAAACCAAACAATTCACA
ATAAACAGAAAAGACAGTAGTTGGAAAAGATAAAGCCTCCTTGACACAAC
CGAAGACATCAAAAGACGTGAAACCCTTACCATCACCACCGCTAATAAAC
TGTAAATAATATTCTTCAGTAAAAAGCTGACGTTACAGACCAAAATATCA
GCTCTTCTCGCATACATTGAACCCATCTTCCTATATAATTGCGAAATTTG
GAGTGTGACAAACTAGCAATGTGAAAACATAATCGATCCATTTCAAAGAG
GACTCCTAAGAACATATGTCTTTAATGTCAGGTGGCCGGAGATAGTCACA
AATGAGAACGTACATGGTTTCTACCCCCTACATTTAGGGGAatcttgggt
tttgatgaaccaaaagcaaggtgggtgttaaaag Run BLAST on NCBI protein sequence of TCONS_00019266-protein >TCONS_00019266-protein ID=TCONS_00019266-protein|Name=TCONS_00019266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MSQAFDSLNRNKLLNDLGNTITPDELHIGSKLLQVSLSVKVDNALSQEFQ
TDTGAPQYLAKALEPVNNKNQLPDHPYAPHQITTTVNDHLSEHNYVLIPQ
TDQLDIKLEYADDRLSTRTPQRQRPNINQDKTKQFTINRKDSSWKR Run BLAST on NCBI transcript from alignment at sc0000323:332388..334580+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019266 ID=TCONS_00019266|Name=TCONS_00019266|organism=Clytia hemisphaerica|type=transcript|length=2193bp|location=Sequence derived from alignment at sc0000323:332388..334580+ (Clytia hemisphaerica)
CAGCGATATTAGACGAGATGTTGCCAAGAGGACAATTCTAAATATATTAC
ATGTTGAACTATAAGGGGGGCCATTAGTAATTTAAAGACTGAATAAATAA
TGTTGATAATAAACTTACAACAATTTCACTTAAAAATTACCGAAAATCTA
CATCATTtataatgaataaaaaaattactaTAATAATTTATTTCGATGAG
TGGCGAattattgggctgttccattaaaaatccGTACAGGGAGTGGAAGA
ACCTTCGtaagtcaaaataaaattcttgaGAATGTGAGGGTactccctgg
aaaatggcaaagttTGAAAGAAACCCTCGGAAAAATTTCCTTTTATACTT
TAAAGTGACGGTGGACGAACTGAAACCTGTCTTTTACCTCCTGAAAATTT
TAGTATAactatttaccccctggaaaatgaaaaaataaacactCCTTTAg
atcccctggaaattcttctaaGGTTACTTACCCCCTGGAAACGTTCGTCC
AatccctgtatggagataaaatggaatggcccatttacCACCTTCTTACT
CTCCGATCAAAGGATTCTACTCTGGACACTAAACATTTTCATAATGTATT
ACAACATAGACTTTTGATTAAAGATGNACTCTGGACACTAAACATTTTCA
TAATGTATTACAACATAGACTTTTgattaaagatgaaaaaatttagaTAA
AGCAAGGAATTATCATGCACTGGATATAAGATTTTTGCTAATTCCTCATA
TTCTAGTTATGTCGGCAATAAtaattattgttcactctcttTCCCTCAAC
AAATGATTTTTTCGTATAGAAAACTCCCACGACAACAATAAAATGTTCCA
AGCTGTCACAATGATCAAAAACCTCAAACCCCCTGATAAGCTACTAATCA
AAGGAAAAAATCGACTTTTCGCAAACCCTGCTGAACAAAGTGAAATCAta
gcaaaatacttcaaaaacCAAGAATAACCAATGCCCATGAGAGACCCTTT
TACTGCCAGCGAAATTAGTAAAACagtcagaaaaatgaaaagaaacaatA
TTTGGTTGCGATGAAGTCCCTATAGAACTCATTAAATATGCACTAGAATC
AATTCACCAAAAAAGTGCTACATAAACCTAGCTGAAACAGGGGACGCTCC
GAAGGAAATAACATATGGTATCCTCAAACCCCTCCAAAAACCCAACAAAT
CGAAAGGAACCCCTGCATACCTAAGACCGATCATTCTCCTATCAGCACTC
TTTCAGAGATAGATTAGACTACGACATCTCATCATCACAAGCTGCCTACC
GAGCAAACAGATCCACTACTGAACATGTTTTTGCATTGAAATTAGTAATT
CCATGTACCATAacatcaaaaagtgaagctgtATATCTGCTACTTCTCGA
CATGAGTCAAGCCTTTGATAGCCTAAATCGAAACAAGCTATTGAACGATC
TTGGAAACACCATTACACCAGACGAACTTCACATCGGATCAAAGCTCCTA
CAAGTATCCCTCAGCGTCAAAGTAGATAATGCCCTTAGCCAAGAGTTCCA
AACCGACACTGGAGCACCCCAGTACCTAGCAAAAGCTCTCGAACCAGTGA
ATAACAAAAACCAATTACCAGACCACCCATATGCCCCACACCAAATTACA
ACGACTGTCAATGATCATCTATCAGAACATAACTATGTATTAATACCCCA
GACGGACCAACTGGACATAAAGCTAGAATATGCAGACGACAGACTTAGTA
CCAGAACACCTCAACGACAAAGACCTAACATAAACCAAGATAAAACCAAA
CAATTCACAATAAACAGAAAAGACAGTAGTTGGAAAAGATAAAGCCTCCT
TGACACAACCGAAGACATCAAAAGACGTGAAACCCTTACCATCACCACCG
CTAATAAACTGTAAATAATATTCTTCAGTAAAAAGCTGACGTTACAGACC
AAAATATCAGCTCTTCTCGCATACATTGAACCCATCTTCCTATATAATTG
CGAAATTTGGAGTGTGACAAACTAGCAATGTGAAAACATAATCGATCCAT
TTCAAAGAGGACTCCTAAGAACATATGTCTTTAATGTCAGGTGGCCGGAG
ATAGTCACAAATGAGAACGTACATGGTTTCTACCCCCTACATTTAGGGGA
atcttgggttttgatgaaccaaaagcaaggtgggtgttaaaag Coding sequence (CDS) from alignment at sc0000323:332388..334580+ >TCONS_00019266 ID=TCONS_00019266|Name=TCONS_00019266|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0000323:332388..334580+ (Clytia hemisphaerica)
ATGAGTCAAGCCTTTGATAGCCTAAATCGAAACAAGCTATTGAACGATCT
TGGAAACACCATTACACCAGACGAACTTCACATCGGATCAAAGCTCCTAC
AAGTATCCCTCAGCGTCAAAGTAGATAATGCCCTTAGCCAAGAGTTCCAA
ACCGACACTGGAGCACCCCAGTACCTAGCAAAAGCTCTCGAACCAGTGAA
TAACAAAAACCAATTACCAGACCACCCATATGCCCCACACCAAATTACAA
CGACTGTCAATGATCATCTATCAGAACATAACTATGTATTAATACCCCAG
ACGGACCAACTGGACATAAAGCTAGAATATGCAGACGACAGACTTAGTAC
CAGAACACCTCAACGACAAAGACCTAACATAAACCAAGATAAAACCAAAC
AATTCACAATAAACAGAAAAGACAGTAGTTGGAAAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019266-exon-sc0000323-1491911889:332388..332971 | TCONS_00019266-exon-sc0000323-1491911889:332388..332971 | Clytia hemisphaerica | exon |
| TCONS_00019266-exon-sc0000323-1510915933:332388..332971 | TCONS_00019266-exon-sc0000323-1510915933:332388..332971 | Clytia hemisphaerica | exon |
| TCONS_00019266-exon-sc0000323-1575043694:332388..332971 | TCONS_00019266-exon-sc0000323-1575043694:332388..332971 | Clytia hemisphaerica | exon |
| TCONS_00019266-exon-sc0000323-1491911889:333031..334580 | TCONS_00019266-exon-sc0000323-1491911889:333031..334580 | Clytia hemisphaerica | exon |
| TCONS_00019266-exon-sc0000323-1510915933:333031..334580 | TCONS_00019266-exon-sc0000323-1510915933:333031..334580 | Clytia hemisphaerica | exon |
| TCONS_00019266-exon-sc0000323-1575043694:333031..334580 | TCONS_00019266-exon-sc0000323-1575043694:333031..334580 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000323 | supercontig | sc0000323:332388..334580 + |
Blast
The following BLAST results are available for this feature:
|
