TCONS_00019261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019261
Unique NameTCONS_00019261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019261 ID=TCONS_00019261|Name=TCONS_00019261|organism=Clytia hemisphaerica|type=transcript|length=1184bp
TCACATTGTTGCGGTCGATACCATTGAGAAGACTCCTGGCAGAACAAGAT
TGAATATTATTCAAAGATGCTCTTctcaagaagttgattttcctGCTATC
AGTTGGTGGCAGAAGTATCCTCTTCATAGAATCACTCAATGTTCCTTTTG
CCAATGGAAGTTTACGTTGATGATGAAACAAAATTGACCCTCCATGGTTT
GACACAGCATTACTGCAAACTGAAAGATAGCGAGAAGAACAGAAAATTAT
TCGATCTTCTTGATGCACTTGAATTTAACCAGgTCATCATCTTTGTTAAG
TCAGTTCAAAGATGCAGTGCCTTATCTGGATTGTTAGTCGAACAGAATTT
CCCAGCCATCGCCATTCATCGATCTATGCCTCAAGAAGAAAGAATCTCGA
GATACAGACAATTCAAAGATTTCCAGAAGAGAATTCTGGTTGCCACCAAT
TTATTTGGTCGTGGTATGGATATCGAAAGGGTCAACATCGTCGTCAATTA
TGACATGCCCGAAGATTCAGACACGTATTTGCACAGGGTTGCACGTGCTG
GTCGTTTCGGTACTAAAGGTCTTGCCATTTCCTTCGTCGCTGATGAAGAG
GACGCAAAAACTTTGAACGACGTTCAAGATCGATTTGAAGTGAATGTCAG
TGAGCTGCCAGTCGAAATTGATGTTTCCACGTACATTGAAGGTTATGAAG
CACAACGATAACTATTCACCATCTGGTGTTCCAAAACGATTAATTTATTA
AGATCATAAAATATGCGAACACTTGCAGACTTGCATCGGTGAAATCTATC
TGAAATTCTATCATCGGATGTAAGAACCAGTAGAATGACACGTTAATTTA
GGCATATGAATTGTCGCATTCATGCAATTTATGCATCGGTCAGCAAAATG
AGCTGGACAAGAAAGGCTGTCGACgttgatttattttattttgtaaatat
agtaacacatacgaaattttttttcacgaagATTAACTTGGCTCAACTTT
TTTAAATCAcaagaaatgaaagaaatgcgctttgtctttttttccttcct
ttttaCTGAAAGAAATGTTAAGTTCGTGCGTACTCtcaggttccaaataa
acggacgttaatttttcgaaaattttccaacccctcgGAGCTTATTAGGA
CCCCTCTTCCCATTTATTAAGGTATGTgtaaaag
Run BLAST on NCBI

transcript from alignment at sc0000323:128751..135215+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019261 ID=TCONS_00019261|Name=TCONS_00019261|organism=Clytia hemisphaerica|type=transcript|length=6465bp|location=Sequence derived from alignment at sc0000323:128751..135215+ (Clytia hemisphaerica)
TCACATTGTTGCGGTCGATACCATTGAGAAGACTCCTGGCAGAACAAGAT
TGAATATTATTCAAAGATGCTCTTctcaagaagttgattttcctGCTATC
AGTTGGTGGCAGAAGTATCCTCTTCATAGAATCACTCAATGTTCCTTTTG
GTAAAACTATGGCCTGGCTTGGAAAAGTGAAATTAGTCATTCTACAATAc
catattttgaccagttaacttaatatagctttttaaaatTTGCCTATTTT
AATCTTCTTGTACCTTTGAACTGAAAGCACAAAATCCCGAAAGTCACGTA
TGACAACCCTGACAACCTTATTGTGTCAGgagcaatttttaattttactt
tttttgtgtAGCCAATGGAAGTTTACGTTGATGATGAAACAAAATTGACC
CTCCATGGTTTGACACAGCATTACTGCAAACTGAAAGATAGCGAGAAGAA
CAGAAAATTATTCGATCTTCTTGATGCACTTGAATTTAACCAGGTAAGAA
ATATAATCATCTAAACAGCTTTTCAGCTACTATTAAAAGAGAATAACCAT
TTTTGCAGGCTTGTCAAAGAAGCTCTTTATTGTGGGAGGAATCGATGATT
TTTTTGCTTAGAAGTACTCTAAGATTTAAACGAAGCAGTGCTTAAATTTA
TCTCGTTCATGTGGTGTGATGTTTCTAGTTTAGAGACAGGTAAATCATTT
CTGTTTTGCCAGTAGGAGGGGTTTTGGTTTGAGGCAATCCATATAGCACC
TACACAGTGAAGGGAGAGAGAGGGGAGTTTAGCAAAAGTATATAATCTCC
ATTGTTTATTGTTCTCTTCGCACAAGGGCTTAGGGTGgcaaaaatctgga
aaatttttgcATAATATGCACTTTGTGGATAACCCCTTCGACGGGCTGCA
ACACTGGATATAGCATTAACGATGAAGTGTCGATTTTTTAAGACcggttt
tgaatttgttttaggTCATCATCTTTGTTAAGTCAGTTCAAAGATGCAGT
GCCTTATCTGGATTGTTAGTCGAACAGAATTTCCCAGCCATCGCCATTCA
TCGATCTATGCCTCAAGAAGAAAGGtataaatttttgcttttttcgatGA
TTTGTAGAGAAGTAATTAACGCTAAACATAAAGATCTATCTATATTCTTC
GCCACGGCATGACATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtctaactgaaagctgacaggatga
aatattttacctccctccctccctgcagttatggttgtaggcgatcctca
cttatttatactaatattgtaGTTATCAGGATAAACTTTCCCCAAAACTT
CTTATTCTTATTATAATTtcatgccaaacttatatctaacgactcacact
tacttctaagccgtctgactacttgattggtttctacccctaatgtaggt
cataggcaaatggaaagttaaacatatgtaatatattgcatcttcatatt
accgtaaagaaattttgttttgttcctcgaattagtatattttttttgtt
tttagctgggatctgggagtctgggctgaaggtgggaattttaggataag
atgggacctgaattttcaggtgggacctggaacccccttgcacactatga
cACTGGAGAAAAAGATTGATACTTGATtatacttgaaattttgatgttat
tgttatttttcaagTATATACTGGAAATGAAAATCTCTAGTACTGGAATA
TACTTGATTTTATCATTCATGATGCCGCGGAGGTCAAATCCTGGATTGAT
GTCCAGCGCGGGATAACTCGCCACCCTTTTTCTTTATATTGTTTGTGAAT
ATCCTTTTTCGTCGAGTCAATTTTAGTCGAGTATGTACTTGAATTAGCAG
TGGGCTATagagacttttttttcaaaattaagtttgcataattttttttg
gtaggTTGGGACTCAAATAACATAAATCTAagatatttttggatatttcc
aaaAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAcctaaaatctgttctatttgtgctacaaacctcaaat
taggcttaaaatgttccttgggaaaAAGCAGGAATCGAATATAGCAATTA
CATACCTCTACAAAATAAACtctataaaattcaaaaattagctATTTAGG
CCAAAATGGACCGTGTCTTCCCGGTTTCCGTCCATTTTGACCTGGaaacc
taatttttttaattttatatacatGGTTAGAGGTACATAATTGCTACATT
CTTATCctgcttttttccaaggaacattttaagcctaNgatccttggaaa
aaagtaggattagaatgtaacaattatatacctctgccatatatataaac
ttaaaaagttaggtttttcggccaaaattgacaaaaattgcgaaaaaaca
gggttttgtctggaaaaaaatctaaaatctgttctgtttgtgctacaagc
ctcaaattagggtcaaaatattcgttggaaaaaagtaggattagaatgta
aNacatattttatgttttatttcCAGGCAAAAACAAGTGTCTTCCTGGTT
TCGGTCCATTTCGGCCTAAATagctaatttttgaattttatagaGTTTAT
TTTGTAGAGGTATGTAATTGCTACATTTGATTCCTACTTtttcccaagga
acattttaagcctaatttgaggtttgtagcacaaatagaacagattttag
gttttatttccagGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCctaaatactt
aattttttaaatttatatatatggtagaggtatatatttgttacattcta
atcctactttcctCCAAGGAATATATTAAGCATAATTTGAGGTTCATAGC
Accaacagaacagattttagattttttttcctaggcaaacccttttttcc
ccagtttcggtcaattttggcccaatttccaaattttttgaagtttacat
ATATGGTAgaagtatataattgttacattctaatcctacttttttccaac
gaaTATTTTGACCCTAATTTGAGGTTCATAGCAcaaacagaacagatttt
agatttttttccaggcaaaaccctgtttttcgcaattttggtcaattttg
gccgaaaaacctaattttttaaatttatatatatggcagaggtatataat
tgttacattctaacccttcttttttccaaggatcattttgagcctaattt
gatggttgtagcaccaacacagcaggttttagattttttttccaagcaaa
atggcCCGAAAATGGCTCATTTTGGGCGGAGAACcgccattttttggaaa
tatccaaaaatatcttagatttatgttatttgggtcccaaccaaccaaaa
aaaattatgcaaacttaattttgaaaaaaaggtctCTATAGCCCACTGCT
ACTTGAATATACTCATTTTTCTTAGTCCAAGatacttgaaaattttgaaa
aatggaaaaaatgtgtgaaaatgTACTTGATTATACTGGAAATTGGATTC
CCGAAATCGCTGGCCACCCTGTGTAGAGAAGTAATTAACGCCAAACATAA
AGATCTATatacagggtgtctacgggaccttgaaaaccttgaaaatgaac
cacccaaccttgaaaaccttgaaaactatcaattttctgggaaaagcctt
gaaaaccttgaaaaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgttaaaaaccttgaaaagcactatccaga
cattcgaaaagtaagaataagtaaaaaaccgcctgcggcgctaaacctTT
ATAACATTTAGAGAACTCCTCCATATTCCCCTGTTTCTGTTGCGATTCTG
TCGCAACGAATGCAacatattcttttatcattagctgagtttttgtcact
aattttccgtttgcatgagccctaagaaatcgaaggttccccaattttca
aatcgcttcagggtgtcttggaataatggccattcatcaataaaattttg
aggattccttaaaacaactcttttggcaattgatttttgtaaaaaacaaa
atcaaaaacaaggcgttttttagccatttgaataagtcaaaatcaaaatt
ttctctcgtcggcgcaaaccatggttgcgcctcttCGGGCAGTGTAAACA
ATTGGTTttgcttctaattctttatttctacagttgggagactagggagc
tggagtttttctttttctggtattgttctcgagagggagataggaattta
actgtggaagtaattccccgggcaccaaaagcgagtaaattttatttgct
gtcctctatttttctttcacctaccactctgaaaaaaaataaaaaattcc
tgtaaagagccatgtcaaaaaaccttgaaaagtgccaaagtttttgccaa
aaaaccttgaaaaaccactttaaaatgaccaaaaaaaccttgaaaacctt
gaaaatcccgaaaaaaaatccgtagacaccctgatATAGCAACATGTTAC
ATAGCCCGTATCTCCATCTAACACCTTGAGTGTTTTAACTCCTGTTAact
cttaaatttttttaatgtgtCCAACAATTCTTCTCGACAGAATCTCGAGA
TACAGACAATTCAAAGATTTCCAGAAGAGAATTCTGGTTGCCACCAATTT
ATTTGGTCGTGGTATGGATATCGAAAGGGTCAACATCGTCGTCAATTATG
ACATGCCCGAAGATTCAGACACGTATTTGCACAGGGTAAGTGAACTTAAA
TTCACCACTGATAGGAGATTGACCTATCTTAGCACAACATACTCCATATA
GTGATTTTACGCTATATACGTAAGAAGAAACTacttaaagttgaaaagtt
ggAATTTATGGATTGGGATAACAGATTTTGAATCCGTTATTTTCGATTGA
AAACTGCTTCATCCTATTTTCAACTTCCAAAAAAACTAAAAGGCTACGTC
TGTCACTATCTCATTCTAGAAGACGGTTCTACTTTAAAGTTACTCATTac
tcatttttcatttctcagGTTGCACGTGCTGGTCGTTTCGGTACTAAAGG
TCTTGCCATTTCCTTCGTCGCTGATGAAGAGGACGCAAAAACTTTGAACG
ACGTTCAAGATCGATTTGAAGTGAATGTCAGTGAGCTGCCAGTCGAAATT
GATGTTTCCACGTACATTGAAGGTTATGAAGCACAACGATAACTATTCAC
CATCTGGTGTTCCAAAACGATTAATTTATTAAGATCATAAAATATGCGAA
CACTTGCAGACTTGCATCGGTGAAATCTATCTGAAATTCTATCATCGGAT
GTAAGAACCAGTAGAATGACACGTTAATTTAGGCATATGAATTGTCGCAT
TCATGCAATTTATGCATCGGTCAGCAAAATGAGCTGGACAAGAAAGGCTG
TCGACgttgatttattttattttgtaaatatagtaacacatacgaaattt
tttttcacgaagATTAACTTGGCTCAACTTTTTTAAATCAcaagaaatga
aagaaatgcgctttgtctttttttccttcctttttaCTGAAAGAAATGTT
AAGTTCGTGCGTACTCtcaggttccaaataaacggacgttaatttttcga
aaattttccaacccctcgGAGCTTATTAGGACCCCTCTTCCCATTTATTA
AGGTATGTgtaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010813XLOC_010813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019261-exon-sc0000323-1491911889:128751..128900TCONS_00019261-exon-sc0000323-1491911889:128751..128900Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1510915933:128751..128900TCONS_00019261-exon-sc0000323-1510915933:128751..128900Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1575043694:128751..128900TCONS_00019261-exon-sc0000323-1575043694:128751..128900Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1491911889:129112..129243TCONS_00019261-exon-sc0000323-1491911889:129112..129243Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1510915933:129112..129243TCONS_00019261-exon-sc0000323-1510915933:129112..129243Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1575043694:129112..129243TCONS_00019261-exon-sc0000323-1575043694:129112..129243Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1491911889:129715..129824TCONS_00019261-exon-sc0000323-1491911889:129715..129824Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1510915933:129715..129824TCONS_00019261-exon-sc0000323-1510915933:129715..129824Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1575043694:129715..129824TCONS_00019261-exon-sc0000323-1575043694:129715..129824Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1491911889:134141..134285TCONS_00019261-exon-sc0000323-1491911889:134141..134285Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1510915933:134141..134285TCONS_00019261-exon-sc0000323-1510915933:134141..134285Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1575043694:134141..134285TCONS_00019261-exon-sc0000323-1575043694:134141..134285Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1491911889:134569..135215TCONS_00019261-exon-sc0000323-1491911889:134569..135215Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1510915933:134569..135215TCONS_00019261-exon-sc0000323-1510915933:134569..135215Clytia hemisphaericaexon
TCONS_00019261-exon-sc0000323-1575043694:134569..135215TCONS_00019261-exon-sc0000323-1575043694:134569..135215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:128751..135215 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.8453	12.8496	13.848	12.6125	24.3204	14.0682	20.5259	24.6647	17.7077	14.5819	7.21787	13.8153	9.10484	9.71999	10.3656	15.1146	20.5061	20.2918	2.74442	5.97037	10.3659	13.5436	48.4716	29.9253	4.95653	11.8761	5.67213	4.80884	20.5481	29.7517
Blast
[Close]
BLAST of TCONS_00019261 vs. Swiss-Prot (Human)
Match: DX39A (ATP-dependent RNA helicase DDX39A OS=Homo sapiens GN=DDX39A PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.373e-109
Identity = 159/180 (88.33%), Postives = 169/180 (93.89%), Query Frame = 1 
Query:  151 PMEVYVDDETKLTLHGLTQHYCKLKDSEKNRKLFDLLDALEFNQVIIFVKSVQRCSALSGLLVEQNFPAIAIHRSMPQEERISRYRQFKDFQKRILVATNLFGRGMDIERVNIVVNYDMPEDSDTYLHRVARAGRFGTKGLAISFVADEEDAKTLNDVQDRFEVNVSELPVEIDVSTYIE 690
            PMEV+VDDETKLTLHGL Q+Y KLKDSEKNRKLFDLLD LEFNQVIIFVKSVQRC AL+ LLVEQNFPAIAIHR M QEER+SRY+QFKDFQ+RILVATNLFGRGMDIERVNIV NYDMPEDSDTYLHRVARAGRFGTKGLAI+FV+DE DAK LNDVQDRFEVNV+ELP EID+STYIE
Sbjct:  245 PMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
The following BLAST results are available for this feature:
BLAST of TCONS_00019261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DX39A4.373e-10988.33ATP-dependent RNA helicase DDX39A OS=Homo sapiens ... [more]
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