|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019253 ID=TCONS_00019253|Name=TCONS_00019253|organism=Clytia hemisphaerica|type=transcript|length=976bp
GAAAATAAATAGTAGAGAGAGTAGATTTTGGCATTCCTCTCATTTGGTAT
AGCTTTTTAAGTTTAACACTAAAgctttttgtaactttttgaacATGGAC
ATCCCATTTCAATTCATCATCAATTATTACACCCAGACATTTTGTTGAGT
TTATCAATTCAATACTTTTGTTGCAGATTGACAAATTTTGAAGTGGACCG
ATGAAGCGGTTTTTGGACATAATCATAACTTTACATTTTCCTGGATGAAT
TGTTAATGAATTTTTCTTGGCAAAAAATTCTAATTCATTTGCATTTTGTT
GGATGTTTTTGATAACCGTGTCTGTGTCTAAACCCACAGTGTAGGCAGTA
GAGTCATCAGCAAGCTGGTCTAGTTCGCAAGTAACACTATCACTCATATC
ATTGACATTTACTGTGAAGCAACAGGGACCAATGAGTGATCCCTGAGGCA
CACCATATTCTACGTTTTCATGTTGGGAGTGAGCTCCATTAATGACTGTA
AATTGTTTGCGATTGGACAAGTAGCTTGtaagaaagtttagaaagtcTCC
TGAGACACCAAAAGCACTCAACTTTTTCAATAAGATGGGATGTGATACAC
TGTCGAAAGCTTTACGAAAATCAATAAAGAAGGTACCAACGGATTGACGT
GAGTCAATAGCTTTTCTCCATTTCTCTGTCATATATAGAAGTATGTCATC
AGTTGATCGTTGTGGTCTGAATCCCCACTGATGTTCTGATTCAAGATTGT
GCTGTCTAAGATGATCTGTTAGCTGAGAGCAGATGAGGTGTTCAACGATT
TTGCTTGGAATTGATAACAGAGATATTGGTCTGTAATTCGAGCAATCAGT
CTTTGATCCTTTCTTGAATACTGCTGTAACTTTTGAAGTTTTCCATTTGG
TGGGAAAGGAGTTTGACGATAAACTGCAACTAACAACGTGTTGTAGTCCC
TCAATTGAAGCTTCAGGGTTCAAAGA Run BLAST on NCBI protein sequence of TCONS_00019253-protein >TCONS_00019253-protein ID=TCONS_00019253-protein|Name=TCONS_00019253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
SLNPEASIEGLQHVVSCSLSSNSFPTKWKTSKVTAVFKKGSKTDCSNYRP
ISLLSIPSKIVEHLICSQLTDHLRQHNLESEHQWGFRPQRSTDDILLYMT
EKWRKAIDSRQSVGTFFIDFRKAFDSVSHPILLKKLSAFGVSGDFLNFLT
SYLSNRKQFTVINGAHSQHENVEYGVPQGSLIGPCCFTVNVNDMSDSVTC
ELDQLADDSTAYTVGLDTDTVIKNIQQNANELEFFAKKNSLTIHPGKCKV
MIMSKNRFIGPLQNLSICNKSIELINSTKCLGVIIDDELKWDVHVQKVTK
SFSVKLKKLYQMRGMPKSTLSTIYF Run BLAST on NCBI transcript from alignment at sc0000321:185161..186136 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019253 ID=TCONS_00019253|Name=TCONS_00019253|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at sc0000321:185161..186136 (Clytia hemisphaerica)
TCTTTGAACCCTGAAGCTTCAATTGAGGGACTACAACACGTTGTTAGTTG
CAGTTTATCGTCAAACTCCTTTCCCACCAAATGGAAAACTTCAAAAGTTA
CAGCAGTATTCAAGAAAGGATCAAAGACTGATTGCTCGAATTACAGACCA
ATATCTCTGTTATCAATTCCAAGCAAAATCGTTGAACACCTCATCTGCTC
TCAGCTAACAGATCATCTTAGACAGCACAATCTTGAATCAGAACATCAGT
GGGGATTCAGACCACAACGATCAACTGATGACATACTTCTATATATGACA
GAGAAATGGAGAAAAGCTATTGACTCACGTCAATCCGTTGGTACCTTCTT
TATTGATTTTCGTAAAGCTTTCGACAGTGTATCACATCCCATCTTATTGA
AAAAGTTGAGTGCTTTTGGTGTCTCAGGAgactttctaaactttcttaCA
AGCTACTTGTCCAATCGCAAACAATTTACAGTCATTAATGGAGCTCACTC
CCAACATGAAAACGTAGAATATGGTGTGCCTCAGGGATCACTCATTGGTC
CCTGTTGCTTCACAGTAAATGTCAATGATATGAGTGATAGTGTTACTTGC
GAACTAGACCAGCTTGCTGATGACTCTACTGCCTACACTGTGGGTTTAGA
CACAGACACGGTTATCAAAAACATCCAACAAAATGCAAATGAATTAGAAT
TTTTTGCCAAGAAAAATTCATTAACAATTCATCCAGGAAAATGTAAAGTT
ATGATTATGTCCAAAAACCGCTTCATCGGTCCACTTCAAAATTTGTCAAT
CTGCAACAAAAGTATTGAATTGATAAACTCAACAAAATGTCTGGGTGTAA
TAATTGATGATGAATTGAAATGGGATGTCCATgttcaaaaagttacaaaa
agcTTTAGTGTTAAACTTAAAAAGCTATACCAAATGAGAGGAATGCCAAA
ATCTACTCTCTCTACTATTTATTTTC Coding sequence (CDS) from alignment at sc0000321:185161..186136 >TCONS_00019253 ID=TCONS_00019253|Name=TCONS_00019253|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at sc0000321:185161..186136 (Clytia hemisphaerica)
TCTTTGAACCCTGAAGCTTCAATTGAGGGACTACAACACGTTGTTAGTTG
CAGTTTATCGTCAAACTCCTTTCCCACCAAATGGAAAACTTCAAAAGTTA
CAGCAGTATTCAAGAAAGGATCAAAGACTGATTGCTCGAATTACAGACCA
ATATCTCTGTTATCAATTCCAAGCAAAATCGTTGAACACCTCATCTGCTC
TCAGCTAACAGATCATCTTAGACAGCACAATCTTGAATCAGAACATCAGT
GGGGATTCAGACCACAACGATCAACTGATGACATACTTCTATATATGACA
GAGAAATGGAGAAAAGCTATTGACTCACGTCAATCCGTTGGTACCTTCTT
TATTGATTTTCGTAAAGCTTTCGACAGTGTATCACATCCCATCTTATTGA
AAAAGTTGAGTGCTTTTGGTGTCTCAGGAgactttctaaactttcttaCA
AGCTACTTGTCCAATCGCAAACAATTTACAGTCATTAATGGAGCTCACTC
CCAACATGAAAACGTAGAATATGGTGTGCCTCAGGGATCACTCATTGGTC
CCTGTTGCTTCACAGTAAATGTCAATGATATGAGTGATAGTGTTACTTGC
GAACTAGACCAGCTTGCTGATGACTCTACTGCCTACACTGTGGGTTTAGA
CACAGACACGGTTATCAAAAACATCCAACAAAATGCAAATGAATTAGAAT
TTTTTGCCAAGAAAAATTCATTAACAATTCATCCAGGAAAATGTAAAGTT
ATGATTATGTCCAAAAACCGCTTCATCGGTCCACTTCAAAATTTGTCAAT
CTGCAACAAAAGTATTGAATTGATAAACTCAACAAAATGTCTGGGTGTAA
TAATTGATGATGAATTGAAATGGGATGTCCATgttcaaaaagttacaaaa
agcTTTAGTGTTAAACTTAAAAAGCTATACCAAATGAGAGGAATGCCAAA
ATCTACTCTCTCTACTATTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019253-exon-sc0000321-1491911889:185161..186136 | TCONS_00019253-exon-sc0000321-1491911889:185161..186136 | Clytia hemisphaerica | exon |
| TCONS_00019253-exon-sc0000321-1510915933:185161..186136 | TCONS_00019253-exon-sc0000321-1510915933:185161..186136 | Clytia hemisphaerica | exon |
| TCONS_00019253-exon-sc0000321-1575043694:185161..186136 | TCONS_00019253-exon-sc0000321-1575043694:185161..186136 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000321 | supercontig | sc0000321:185161..186136 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
