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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019247 ID=TCONS_00019247|Name=TCONS_00019247|organism=Clytia hemisphaerica|type=transcript|length=2864bp
actcgtaaaatatttctcatattgtactcgcaactgtccaaTAACTATTA
CATAAATAGTAGGGAGAGGTATAAAAGTACAGAAAGAGAGTACAAATCAA
TTTTCGTATTCATTATTGTGTATTTTCATAGATTGAAGCATATCTTTTTA
CAAAGTAGTGGTGTTGATAGTGTGtgcacaattttttttcttagaaaaat
ataatttctattttAGTCGTGGTGGTGTTGTATGATGGTTCTccctaaga
aaataaaatattacgaTAAATTATGTGTCAAATATAATATACAATTTTAA
TTCTTGTGTCCCTAGATGTAAAGTTGAACTCTctgaattaaaattttaaa
tacaGAACTCGGAAAATGGAATTTACACAGCAAATGTTTCATATTTTACC
GACAATTTTTGGGGACTACAGAAGTCCTTTCCAGAAAAATTGTAAGATTA
ATTAGAATAAattgaattttacaaaaaaatctcaattcaaAGAGGTATTT
TTTATGATTGGACACACAAAAGAATTATAAACGGTGCATTTAAAAGTGAA
ACATGTATAGAAATTATCTTGCAAAAGTGCATATCATATACGGTAAAAAC
ataatttgaaattcaaaatagtTCGTACGTTTGTTGGCAAAATGCACAAT
GATGTATCAAGTACCGTGTGCTAAAATTTcctatttaaaaaattcattat
AATATAATTTTCAGAGTAATTAAACATCTCTAAAATTATAGGAAAGCACG
AGTCAAATTAAAGTGGACAAAACTAAAATATAGGATATATAATTTgtgtc
aaaatattaaaaaatattatctaAATTTCCGTATATTGTCTTAAAAGTGC
TTCCAAGGATACTGTTAAAAAAGTTTGTATTGAAATTATGAATTGACTCA
TACTCCAATAACAATCAACAGACACTTCTTATTCGGGATTAATCAATAAG
CTACTGTCGTAGTTGAAAACATTTATTCCGAAAATCGATCAAATTTAAGA
ACACCCTGTACAACCACCGATACAATCAATCTCTCCTTAAAAATACTCAA
CAcccttttaaagtttgaaaagattcttattttgataaaatggaTTAAAA
ATTCTTTATGTACAgtgttgacaaaaaaaattcaataaaataaaaaatga
ctaGAGATTAATCATAATCAATTGtcataaaaaattctaaatgaaaaatt
ttgtcaaattaaaaaatttgctTTCGCCAGTCAAACAAGACTGTCCATTC
ATAATTAGCTCCCAAAAGTTCTCCATTATATCAGTATCATTAAAATCAAT
ATCCTTTTTATTATGGTAATCCAAATGCTGGCATCTGAGTTTTAGAATCT
CCATTAAAGGGAGTTCCACAAGGGATCTTGTCCCTACCAATTTAACAGTC
CACATCTCCCAAACAATAACACCTTTCTCACATTGATAAAACCTCTAAGG
ACTTAGTAAGCCTTAGATCTTGTGAAGGTGAGGTTGGTATATGTTCCACC
GATTCACGAACGTATGGAGGCTTAAAGAACTGATGTCCATTATTATCCTG
TTTGAAAACATAACCATTACGTGAAGCCGTATTTCTACGCGTCTCCAAAT
ATTTGGCTGGGCATGAAGGCGGTCTCTCACCCAAGAAGGTATTACCATAC
ATGGTAGAGAAATCTTGGGGACCTTGGAAAGCCAATCCACTACCTTTAGG
GATACATAGATCGCGACGATCACCTTGTCGTCCTTTGAAATCGGTTTGGA
AAGTGGTAGACCCATCAAACTTACCATGCGGGCTGTATGCTTCCTTTGGT
TTGCAGCTTTGACGTGCATTCACTTCCCATGGTTTAAACGCATCTTTATG
CGTTGTTCGATCTGCAAATTCTCCTGGCTCCATTCGGTTATAGTAAGGAC
GCATGCTTCGAGCTGGTGATGACGATTTGCCATCATAATCATGTTGGAAG
GTGGTCTTAGCATCGAATGGATCTTGGGGTGGTACCCAACCAGATTTAGG
TTTCCAGCCTTTTGTCTTAGCAACTTCCCAAGGCTTATAGGTCATGTTAT
GAGTTGTTAGCCCATCTAATGGCATACTGGAGCGTCTTACCATCTGTTGT
GGTTTACAACTTTCAGCTGGATGTCCCTTAGGCCATGGAAAGTTATGTTG
GAATGTGGTTTTATGATCAAATGGGTCTGTATTGTGAAGCACATATTGGG
GTGGTCTGGCTGATTTCTCAGGGCGGGCATCCTTGGGTGTGTAATCACGA
CGGGTGGTGGTTTCATCTGAGAATTTACCAGCACCCATCGAAAGAGTTGG
GCCTTTTGGTATGATGGGTTGTCGACCAGCGTGTCCTGGATATCCAGTAA
AATCTTTTTGGAAAGTGGTTTTATGGTCAAATTTTCCTGATGGTAATTTG
ATAGCTGATTGATGACGAATACCCTGGGTAAATGGAACTTCCCACGGTTT
GTATGTTTCTTGATGAACGGTCGTTCCACTGAAAGGACGGTCTGATGTAG
CTGGTTGGTAAGGTGGTCGagctgatttcattttttcagcaGATTTCTCA
GTATAATCATGTTGGTAGCTTGAGGTGCCATCAAAATTTCCTCCAGGCTT
GACATATTTAGCCTGTTCTCGTTTCTTACGTGCTTCTAATGGATGTTTTG
TATACTCTAATTCGTATAATGTTCTAGCATCGAGTGGGACATCACTCCTT
TTGGTAGCAGAATCTGGTTTGATGGGTTTTTGTGGTGCATAGTTGTCAAA
TTTGCGATATGTTTCTTTGTATTCGGATAAAGCACATGGGCCGCTTGGTT
TGTTTGTTTTCGGACGGTGGACACAGTGATGGCGactaaaaagaaatcaa
attaaattttaaat Run BLAST on NCBI transcript from alignment at sc0000321:338497..341413- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019247 ID=TCONS_00019247|Name=TCONS_00019247|organism=Clytia hemisphaerica|type=transcript|length=2917bp|location=Sequence derived from alignment at sc0000321:338497..341413- (Clytia hemisphaerica)
ACTCGTAAAATATTTCTCATATTGTACTCGCAACTGTCCAATAACTATTA
CATAAATAGTAGGGAGAGGTATAAAAGTACAGAAAGAGAGTACAAATCAA
TTTTCGTATTCATTATTGTGTATTTTCATAGATTGAAGCATATCTTTTTA
CAAAGTAGTGGTGTTGATAGTGTGTGCACAATTTTTTTTCTTAGAAAAAT
ATAATTTCTATTTTAGTCGTGGTGGTGTTGTATGATGGTTCTCCCTAAGA
AAATAAAATATTACGATAAATTATGTGTCAAATATAATATACAATTTTAA
TTCTTGTGTCCCTAGATGTAAAGTTGAACTCTCTGAATTAAAATTTTAAA
TACAGAACTCGGAAAATGGAATTTACACAGCAAATGTTTCATATTTTACC
GACAATTTTTGGGGACTACAGAAGTCCTTTCCAGAAAAATTGTAAGATTA
ATTAGAATAAATTGAATTTTACAAAAAAATCTCAATTCAAAGAGGTATTT
TTTATGATTGGACACACAAAAGAATTATAAACGGTGCATTTAAAAGTGAA
ACATGTATAGAAATTATCTTGCAAAAGTGCATATCATATACGGTAAAAAC
ATAATTTGAAATTCAAAATAGTTCGTACGTTTGTTGGCAAAATGCACAAT
GATGTATCAAGTACCGTGTGCTAAAATTTCCTATTTAAAAAATTCATTAT
AATATAATTTTCAGAGTAATTAAACATCTCTAAAATTATAGGAAAGCACG
AGTCAAATTAAAGTGGACAAAACTAAAATATAGGATATATAATTTGTGTC
AAAATATTAAAAAATATTATCTAAATTTCCGTATATTGTCTTAAAAGTGC
TTCCAAGGATACTGTTAAAAAAGTTTGTATTGAAATTATGAATTGACTCA
TACTCCAATAACAATCAACAGACACTTCTTATTCGGGATTAATCAATAAG
CTACTGTCGTAGTTGAAAACATTTATTCCGAAAATCGATCAAATTTAAGA
ACACCCTGTACANAGTTGAAAACATTTATTCCGAAAATCGATCAAATTTA
AGAACACCCTGTACAACCACCGATACAATCAATCTCTCCTTAAAAATACT
CAACACCCTTTTAAAGTTTGAAAAGATTCTTATTTTGATAAAATGGATTA
AAAATTCTTTATGTACAGTGTTGACAAAAAAAATTCAATAAAATAAAAAA
TGACTAGAGATTAATCATAATCAATTGTCATAAAAAATTCTAAATGAAAA
ATTTTGTCAAATTAAAAAATTTGCTTTCGCCAGTCAAACAAGACTGTCCA
TTCATAATTAGCTCCCAAAAGTTCTCCATTATATCAGTATCATTAAAATC
AATATCCTTTTTATTATGGTAATCCAAATGCTGGCATCTGAGTTTTAGAA
TCTCCATTAAAGGGAGTTCCACAAGGGATCTTGTCCCTACCAATTTAACA
GTCCACATCTCCCAAACAATAACACCTTTCTCACATTGATAAAACCTCTA
AGGACTTAGTAAGCCTTAGATCTTGTGAAGGTGAGGTTGGTATATGTTCC
ACCGATTCACGAACGTATGGAGGCTTAAAGAACTGATGTCCATTATTATC
CTGTTTGAAAACATAACCATTACGTGAAGCCGTATTTCTACGCGTCTCCA
AATATTTGGCTGGGCATGAAGGCGGTCTCTCACCCAAGAAGGTATTACCA
TACATGGTAGAGAAATCTTGGGGACCTTGGAAAGCCAATCCACTACCTTT
AGGGATACATAGATCGCGACGATCACCTTGTCGTCCTTTGAAATCGGTTT
GGAAAGTGGTAGACCCATCAAACTTACCATGCGGGCTGTATGCTTCCTTT
GGTTTGCAGCTTTGACGTGCATTCACTTCCCATGGTTTAAACGCATCTTT
ATGCGTTGTTCGATCTGCAAATTCTCCTGGCTCCATTCGGTTATAGTAAG
GACGCATGCTTCGAGCTGGTGATGACGATTTGCCATCATAATCATGTTGG
AAGGTGGTCTTAGCATCGAATGGATCTTGGGGTGGTACCCAACCAGATTT
AGGTTTCCAGCCTTTTGTCTTAGCAACTTCCCAAGGCTTATAGGTCATGT
TATGAGTTGTTAGCCCATCTAATGGCATACTGGAGCGTCTTACCATCTGT
TGTGGTTTACAACTTTCAGCTGGATGTCCCTTAGGCCATGGAAAGTTATG
TTGGAATGTGGTTTTATGATCAAATGGGTCTGTATTGTGAAGCACATATT
GGGGTGGTCTGGCTGATTTCTCAGGGCGGGCATCCTTGGGTGTGTAATCA
CGACGGGTGGTGGTTTCATCTGAGAATTTACCAGCACCCATCGAAAGAGT
TGGGCCTTTTGGTATGATGGGTTGTCGACCAGCGTGTCCTGGATATCCAG
TAAAATCTTTTTGGAAAGTGGTTTTATGGTCAAATTTTCCTGATGGTAAT
TTGATAGCTGATTGATGACGAATACCCTGGGTAAATGGAACTTCCCACGG
TTTGTATGTTTCTTGATGAACGGTCGTTCCACTGAAAGGACGGTCTGATG
TAGCTGGTTGGTAAGGTGGTCGAGCTGATTTCATTTTTTCAGCAGATTTC
TCAGTATAATCATGTTGGTAGCTTGAGGTGCCATCAAAATTTCCTCCAGG
CTTGACATATTTAGCCTGTTCTCGTTTCTTACGTGCTTCTAATGGATGTT
TTGTATACTCTAATTCGTATAATGTTCTAGCATCGAGTGGGACATCACTC
CTTTTGGTAGCAGAATCTGGTTTGATGGGTTTTTGTGGTGCATAGTTGTC
AAATTTGCGATATGTTTCTTTGTATTCGGATAAAGCACATGGGCCGCTTG
GTTTGTTTGTTTTCGGACGGTGGACACAGTGATGGCGACTAAAAAGAAAT
CAAATTAAATTTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019247-exon-sc0000321-1575043694:340403..341413 | TCONS_00019247-exon-sc0000321-1575043694:340403..341413 | Clytia hemisphaerica | exon |
| TCONS_00019247-exon-sc0000321-1575043694:338497..340349 | TCONS_00019247-exon-sc0000321-1575043694:338497..340349 | Clytia hemisphaerica | exon |
| TCONS_00019247-exon-sc0000321-1510915933:340403..341413 | TCONS_00019247-exon-sc0000321-1510915933:340403..341413 | Clytia hemisphaerica | exon |
| TCONS_00019247-exon-sc0000321-1510915933:338497..340349 | TCONS_00019247-exon-sc0000321-1510915933:338497..340349 | Clytia hemisphaerica | exon |
| TCONS_00019247-exon-sc0000321-1491911889:340403..341413 | TCONS_00019247-exon-sc0000321-1491911889:340403..341413 | Clytia hemisphaerica | exon |
| TCONS_00019247-exon-sc0000321-1491911889:338497..340349 | TCONS_00019247-exon-sc0000321-1491911889:338497..340349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000321 | supercontig | sc0000321:338497..341413 - |
Blast
BLAST of TCONS_00019247 vs. Swiss-Prot (Human)
Match: SAXO1 (Stabilizer of axonemal microtubules 1 OS=Homo sapiens GN=SAXO1 PE=1 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 2.108e-27 Identity = 123/455 (27.03%), Postives = 187/455 (41.10%), Query Frame = -1
Query: 1518 RHHCVHRPKT--NKPSGPCALSEYKETYRKFDNYAPQKPIKPDSATKRSDVPLDARTLYELEYTKHPLEARKKREQAKYVKPGGNFDGTSSYQHDYTEKSAEKMKSARPPYQPATSDRPFSGTTVHQETYK----PWEVPFTQGIRHQSAIKLPSGKFDHKTTFQKDF--TGYPGHAGRQPI-IPKGPTLSMGAGKFSDETTTRRDYT--PKDARPEKSA---RPPQYVLHNTDPFDHKTTFQHNFPWPKGHPAESCKPQQMVRRSSMPLDGLTTHNMTYKPWEVAKTKGWKPKSGWVPPQDPFDAKTTFQHDYDGKSSSPARSMRPYYNRMEPGEFADRTTHKDAFKPWEVNARQSCKPK-EAYSPHGKFDGSTTFQTDFKGRQGDRRDLCIPKGSGLAFQGPQDFSTMYGNTFLGERPPSCPAKYLETRRNTASRNGYVFKQ-DNNGHQFFKP 2834
RHHC H P +K PC LSEY E Y + +Y P++ KP ++ +P++ T ++ H + K + ++V N D ++Y+ DY ++ P +P S P S TYK PW P + +R + + S +FD++TT Q D+ G +P+ +PK + D T + Y P + R A RP + PF+ TT + ++ G PA+S KP MP T Y+ W + + P + +VPP+D D TT Q Y +PA+S RP + G F +T KD +K W + KP + P D TT + + C P SG P + T Y +F + C A Y E GY F++ D GH+ +KP
Sbjct: 14 RHHCPHLPTKIYDKTEKPCLLSEYTENYPFYHSYLPRESFKPRREYQKGPIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVD----PIKPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTISCKPLAMPK-----LCNIPLEDVTNYKMSYVAHPVEKRFVHEAEKFRPCEI------PFESLTTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPIT-YVPPEDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYPEP-------PGYTFEEVDALGHRIYKP 445
The following BLAST results are available for this feature:
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