TCONS_00019234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019234
Unique NameTCONS_00019234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019234 ID=TCONS_00019234|Name=TCONS_00019234|organism=Clytia hemisphaerica|type=transcript|length=804bp
AACACATTGACTGGTTTGATTTGCAATCCAGTATTTGATTTTCAAGTCTT
TGAAGAACTTTCAACTCTGAGCAGTAGGAATATGAGCTCTATCAGGAGAA
CAATACAGGCGATAGAAGATATTCAGGAAAGATTGAATAGAATTATCCCA
GAAGCTCAAGATGCATTCTCAGAGATTCAACAACTCGAAGGTTATGACAG
TATTCAAAAGATATTCCAAGACTTGCAAAACATTAGTCGAGATTATTCTT
TCACATACAACAACGTATCAGTCATGGAATTTTCGTACGTCATATGCGGT
GGTGTACCAAACATGACACAATTTTTAAATACCACAACACAAAAACTGCC
ACAATCAAAATCGCCAAGCACTGCACCACTCAACATGTCAACCAATGGAC
CAACCCACACAACCACAACAGCGACCACTACAACTCAAAAACCCATGACA
ACAACCACAAAACGATCTACTACTGCTAATGACTTGAATGATGCATCGAC
TACGACGCCTGGCAAAATCACCTTTAAACCTACAAATCCATTTACTTCAT
CTACCAAAGGCAAAGAAACGTGTAGTTCGATAGACCCATCAGATCGTGTA
GATTGTGGATGGGGTGGCATCAGTGCAAACGAATGTCGAAAACAAGGCTG
TTGCTATGATAGCACCATACCGAAAGCCAAATACTGTTTTTGTGCTACTA
GTAAGATTTATACTCCAATTCTTAAAAGTAttattttacataagtgttcc
cgtaaCGAAAAACAAAAGCCGCAAAGATGTAGATAATTTCTTGAGATATA
TGAG
Run BLAST on NCBI

transcript from alignment at sc0000321:78726..85229-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019234 ID=TCONS_00019234|Name=TCONS_00019234|organism=Clytia hemisphaerica|type=transcript|length=6504bp|location=Sequence derived from alignment at sc0000321:78726..85229- (Clytia hemisphaerica)
AACACATTGACTGGTTTGATTTGCAATCCAGTATTTGATTTTCAAGTCTT
TGAAGAACTTTCAACTCTGAGCAGTAGGAATATGAGCTCTATCAGGAGAA
CAATACAGGTATTTATTTGTTGCTGAAGAGCTCAATCCAGGGGTACTAGA
TTTGCAAGGCAGCTGATACAGTATGTCAAATTTAGAAAATTTACCCTATG
AGAGATATTTCTCAATTTTCAACAGAAATTTTTCAACTTTGGTCCCAATT
TATGACTCCCAATTTATGAAGGAGTCAACTTTTGAATTTCGTACTTTTCG
GGACCTATCAGAGACTCAATTGTTGTTTTATGGCTTTTCTACCCCTGTGA
GAGACTTTTGAGGGTGTGAAAAAGGGACACTCGCACATACCTGACATCCA
TTCTGCCTGAATACCACACCCCCGAAGCTCAATGTATTGAACAATCGGCT
TCTCCATCTAATATGCTTACATCTCTTTTCTTCCATAATTATGGATCTTT
TTTAATCCAAAATACCCTGTTTGTCATTCTTATGCCTATGCGTCAGTTGC
TTTAGTGTTTGAGTCCAAAGTCCGACACTGTTCTAAGAATGAATTTGCAG
CATGGACTGGAGAATCTCACATTAGTCCCCAGTTATGGAATTGAGGTCGT
TGTGCCATATCTGTGTTGACATCCTAAATATGATAAGTGTAAATTTGTAC
AAATGCTCATCTTACTATATTTTTTAAAGTTTTTTCTCAACCTCTGCTTC
ACTACAGGCGATAGAAGATATTCAGGAAAGATTGAATAGAATTATCCCAG
AAGCTCAAGATGCATTCTCAGAGGTTGGTTAAATTGAAGTTGATTTTCGT
AGCACTTNTTTTCTTGTTGCCCAATATTTCTCATATTGGATGAGACTGCG
TCCAAATAAATTGTTTACTATCCATTCATTCAAATATTTCTCGCTTTCAA
GAATAATTCAATTTATAAGCTCATAAATCTGGTGGTCTCTTTGTATGTTT
TGATACTTTCTATTTTGTGACCTAACGTCAAAAAGAAGATGCACAATTGT
CATCAAATTGGTTGCGTGGCGTCAATTCTTGAAATGTATAGCCCCACACC
TCCAAGGACGCTATATATTCGAAAATACTGGAAATTAAAAAAGCCAATCA
AATGTCGCTATTTTTGTGTGTCAGATAATAAATGAATATATATCTTTTAC
TCAGCTTTTGTACGTTTTGCGTTTACACAAATCTTCAAATTAGGACATAA
TCCTATGTTTTTTTACATCTTTCAGTTTCGAAATGTGGTTGAAATAGTAT
GGCCACTTGCTATTTTCATCATCTTGGCTGCTGTTCGTAAGAAAAGATTA
CCAGAAAAAATGCCTCTTGAACACGCAGGTATGATAAATTTTATAAGAAT
GGGTGATTTTGAACCTTTGTTGTAGATAGAAATCAGCCTAGTCAAGAGAC
TTCTTAAAACATGGATTCTTTTCTTGATAAGTAAGCATTGTACAATTCAG
AACTTTGCTGAAATTTCAGTTTTTAATTCCAGCCATTCTGTCCTGATTCA
CCAAAGCCAATCACAACACTCACTCTAATTTGAGAATCTTGGTTATCATA
AGAAAATTTTTGAAGTTGGTGTAGAAAAGATTTTTTAAATGTTTTTCAGG
TTTTGAAGGTGCTATCCATTACAACCCAAGAGCCTTACCATCTGCTGGTG
CTTTGCCTTTTCTTCAATCTCTTTACTGCAATTATCGTGTTGATGAAATG
TTGGAGGAACCCCAGGAACTACCACAGTTTACTTCATCAATGTGAGTAAA
TCTTTGTTGTTTATTTATTACTATGTACTAAAGATTTTTATTGTTCGCCA
TTTATTATACTTTTCAGAGAGTCTTTAAAAATTGGACTTAAATACACCTT
TTCGACCGTAGCCGCCAATTGCCGCGCGGGCTTGTCTGCTTTATCCTACT
AAAACCGTCCCAGTCCTTTTTTCGCGTACCTATAGACAATAGAAAAATGA
GTCAAAACAAAAGAGGATTGGATCGAGTTTATGGAGATACTTGAATAATT
AAGTGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGTTGTATTGAAT
CTAAAGAAAGATATTACCCTATTATAGTTATAATCAGATGTGAATAAAAA
TTTAGTTTTCAAATGATTAATATTTTTATCTCAAGTGGCTACCAATTATT
AAATGACCTACAAGCATTTGCATCAAATCAAACACAAGTGGACATGTTCA
ACCGTTTACAAAACAATGTGACTCAACTTTTGCCGGAGTTGTCAGCTGTT
TTCAATGATTTGAATGTATCAGGATTGCTGGTCAACGGGTCATTTAATAC
AGGTAATCTTTCTCTTGATAACATTTTATTTTTGTATATTTGGTATGTGA
TGATATTTTGTTTTATTAAAAATGGAATATTGATCAGAATTACAGTATTG
GATGACCATGATTAAGATCAAAACATGTCTCAGAAATAAAAATTGATCTA
CGTTGGTCAAGTTTCTTGGTTATGTTTTGTCACTATGGTTTATGGTTTTA
ATTCATTACAGTGCTCACAGTTCTGTAGTCTCACGCAAAATTCATCAAAT
AATTGGAAGTCTGGTCTAATTTGTTTTGTTGAATTCATGTTCTGTTAGAG
ATTTTAAAGATTTATTGCAGACTCAATGCTAGCACAATGAATATCCTAAA
TTTGTTAGTTTTTTAATGTCTAACAATTTTTAGGCCAATTCCCCTTAGGG
GATTGTCCAATTTATTTATTATTATTTTAAAGACTTTGCTGTGACCACTG
ATACCATCAATTTGATCAAACTAAATCAGTGCAAAGGTTTAACATTATTG
ATAAAAGGAATATTCAGTAATAATAAACTTTTCATTATAATGCTTTAATT
TATATTTGAAACTGTCAATTTAAATCTTCTAGACATCACACTTCAAACTT
TGCTTGGGAATGACGCACAAGAGTTCTTAGACTTTCTGGTGAATACAACC
AATGTCCCTTTAAACACATCTGAAGCACTTATTCAAAGTAGAATCAATGT
AAGTTGTTGGGCTCTTATGATAAATTAATCACATTCATTGAATTGAATAT
GATTGCATGGCCAACTGTCACTATCAATCTGTTTTAAAAATAGATTTAAG
AAAACTTTAATGAACAAGTGTGACTCAATTCAACTACAAAATATTTGATG
GCAGGGTTTGTGCCCCTCTTTGGTCTTTCATTTGTTTACATTCGACTTTC
CTGGTCAGCATAAACTAAAAACAACATTAGCAAGCCTTTTTTAATTTTCA
TAATTTTGTTTTTTTCCTTTGAGTATATGGACAATTTCAAAAATTTCAAT
AAAATTTTATATGCAGAAATTAAAAAGCGCCATTAAAATGGGATTTGATT
GTTTCTTTGATTTTAATTGTGTGATGTTTATACCAAGGAGATATAATGTT
TTTCTTACTCATTAGGTGACAGGTAGTGTTGAGTTGGTTGAAGAATTTTT
CCCAAACCTGACAATTTCTTCAATACCTGAACTTCTTCAAAAATTACAGG
TAAGAGTTTCAATATTATCACAACCCTATTAAACGGAAGTTGAAAAAAGC
CCTTTTATAATGAAAACTAGAAATATGACATTTGGTAACCTGTCTCACTC
CAAACATTAAAACATTTTCAATGAAATTCAACATTAGAGGAGGCTAATAG
AAGCGTACCAGATTTCCTTTTTTTAAACATTGTTGTACAATCAATACTCT
CTCTAATTCGAACCTGTACTTTACGAATCTTTCATAAATAAATAATAATC
CCCTGAGCTGGAAACCAGTATATAGCTGTAATTTGATTTTTTTTTAAATC
GAATTCGAAGACCGAATTAGAGAACGTAGTATTTTAGAGTACGAGACTTA
ACTTATAACTTTTTTCAAATCACATTGTTTATTTTAGGAGATAAGTAATG
AAACATGCACAAACAAACGAATCAATAACATTTTGATCTTCCCAGATGGA
TCGGACCCTGTAAGTTCTTTTAAACAACTTAAAAAAAAAACATTTTTATT
CATCTTGACGTTTCGATGTTTGCTTTACATTAAAATATTAAAAGCAATGA
AAATTGTATCAAAATTTAGATCTCTATAGTTTACTATTTTATTTCAGCAT
GATTCGTTTCGTTAGGGAAAAGCTGGGGGTGGCTCTTCAATACACGTTTT
TTTATAAGAACAGACTATATAAGAACATTATGTTTATATGGCCAAAATAT
TACGAGCAAGTTCAGAAGATTTCTTACGCAATCACACAAACAACTCACAA
AAACGTGAAAATAAGAACATTTTTAGGTTTAAAAATTATGCATGCTCTTA
AAAAAAAAAGAGGGAAACCTTTCAATCTGTTTGCACTTTCACTATTATGA
GTAAACTATGAATCTTTATTTCATAGAACACATTGACTGGTTTGATTTGT
AATCCAGTATTTGATTTTCAAGTCTTTGAAGAACTTTCAACTCTGAGCAG
TAGGAATATGAGCTCTATCAGGAGAACAATACAGGTATTTATTTGTTGCT
GAAGAGCTCAATCCAGGGGTACTAGATTTGCAAGGTAGCTGATACAGTAT
GTCAAATTTAGAAAATTTACCCTATGAGAGATATTTCTCAATTTTCAACA
GAAATTTTCAACTTTGGTCCCAATTTATGACTCCCAATTTATGAAGGAGG
CAACTTTTGAATTTCGTACTTTTCGGGACCTATTAGAGACTCAATTGTTG
TTTTATGGCTTTTCTACCCCTGTGGGAGACTTTTGAGGGTGTAAAAAAAG
GACACTCGTTGTGCTATATCTGTGTTGACACCCTAAATATAATAAGTGTA
AATTTGTACAATTGCTCATCGTACTATATTTTTAAAAGTTTTTTCTCAAC
CTCTGCTTCACTACAGGCGATAGAAGATATTCAGGAAAGATTGAATAGAA
TTATCCCAGAAGCTCAAGATGCATTCTCAGAGGTTGGTTAAATTGAAGTT
GATTTTCGTAGCACTTTTTTGACTAGTATCCATCCATGCTCAAAATTTTC
GAAAAAAAACAATTACCTCAGATTACACAGTTTCACGCATGTCTTAATTG
GTCTGATACAAAATGTTTAATACAATCTTGTTGACAGAACCTTTAAAAAC
TTTGGAAACCTATGCAGACACGTATAATTGTGCTACTATAAAATGTTTTT
AATAAGCTCGAAATGCTAAGTTAGCATTTAGCATGAATATGCGTGCGCAA
GGAAAACTATCAAAATGCGCGAAAGTTACCTGCACCATGAGTAGTAAGTC
AGTAACAAAAACATCAAAAACTTATCGTGAACAAAGTTTTTTGCTTGGTC
TTCCTGGCCATTCTTTCGTCCAAACAGCTATCATATATTCTTGAAACAAA
ATGGTCGTAGAGATTCGAGGTTTGATTTTCGAAACTTTTTAGAAATTTTC
ACAATTACAATAATTATTGTTCTATATAGATTCAACAACTCGAAGGTTAT
GACAGTATTCAAAAGATATTCCAAGACTTGCAAAACATTAGTCGAGATTA
TTCTTTCACATACAACAACGTATCAGTCATGGAATTTTCGTACGTCATAT
GCGGTGGTGTACCAAACATGACACAATTTTTAAATACCACAACACAAAAA
CTGCCACAATCAAAATCGCCAAGCACTGCACCACTCAACATGTCAACCAA
TGGACCAACCCACACAACCACAACAGCGACCACTACAACTCAAAAACCCA
TGACAACAACCACAAAACGATCTACTACTGCTAATGACTTGAATGATGCA
TCGACTACGACGCCTGGCAAAATCACCTTTAAACCTACAAATCCATTTAC
TTCATCTACCAAAGGCAAAGGTATTATGAAAATTATCTAATCTTATTTTA
TAAAACTGAAAACCAAATAAAGCTTGGTATGAGATTTATTTATTTTCTAT
TTACATGTTTCTCACAATCTTTTTAAATTTAAATTTTCAAAATTTAAAGG
AATTACTTTTTCTGTTCTAACGCATTTTTGGTAGAGGTGTAAAAGTAAAG
ACAGTGAAATCATTGTGAAAAAACTTTTGCAAGGTTTATTCAACAATCCC
TTAGAAAAAGAAAATCTAAAATATTTCTACAAGATGACAATAGGTAGCTC
GACGTTGAAAATTATTTTCTTAAAGTAGCTCAATAACTCAGCTATTGTTA
AGGACGAAATTTTGTAATGGTTCTTTTTTTTTAAATCTTCATGCATGAAA
TATTTTTTTCTCTAGAAACGTGTAGTTCGATAGACCCATCAGATCGTGTA
GATTGTGGATGGGGTGGCATCAGTGCAAACGAATGTCGAAAACAAGGCTG
TTGCTATGATAGCACCATACCGAAAGCCAAATACTGTTTTTGTGCTACTA
GTAAGATTTATACTCCAATTCTTAAAAGTATTATTTTACATAAGTGTTCC
CGTAACGAAAAACAAAAGCCGCAAAGATGTAGATAATTTCTTGAGATATA
TGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010797XLOC_010797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019234-exon-sc0000321-1575043694:85122..85229TCONS_00019234-exon-sc0000321-1575043694:85122..85229Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1575043694:84407..84472TCONS_00019234-exon-sc0000321-1575043694:84407..84472Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1575043694:79360..79750TCONS_00019234-exon-sc0000321-1575043694:79360..79750Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1575043694:78726..78964TCONS_00019234-exon-sc0000321-1575043694:78726..78964Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1510915933:85122..85229TCONS_00019234-exon-sc0000321-1510915933:85122..85229Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1510915933:84407..84472TCONS_00019234-exon-sc0000321-1510915933:84407..84472Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1510915933:79360..79750TCONS_00019234-exon-sc0000321-1510915933:79360..79750Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1510915933:78726..78964TCONS_00019234-exon-sc0000321-1510915933:78726..78964Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1491911889:85122..85229TCONS_00019234-exon-sc0000321-1491911889:85122..85229Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1491911889:84407..84472TCONS_00019234-exon-sc0000321-1491911889:84407..84472Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1491911889:79360..79750TCONS_00019234-exon-sc0000321-1491911889:79360..79750Clytia hemisphaericaexon
TCONS_00019234-exon-sc0000321-1491911889:78726..78964TCONS_00019234-exon-sc0000321-1491911889:78726..78964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:78726..85229 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.281133	0.352482	0.366292	0.468575	1.71091e-09	0	0	0	1.38632	2.06688	2.7712	0.682295	2.31735	2.08376	0.660306	0.665923	0.562796	0.906391	0.507345	1.95426	0.877187	1.05553	0	0.641375	1.79682	1.34583	0.170202	0.450206	0	0.342264
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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