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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019233 ID=TCONS_00019233|Name=TCONS_00019233|organism=Clytia hemisphaerica|type=transcript|length=7290bpRun BLAST on NCBI protein sequence of TCONS_00019233-protein >TCONS_00019233-protein ID=TCONS_00019233-protein|Name=TCONS_00019233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1691bp QFGSGLKSATDLLSNAITFMETLEQNEGLIEQLEELSQQLDSPAVLRELDRun BLAST on NCBI transcript from alignment at sc0000321:27240..76520- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019233 ID=TCONS_00019233|Name=TCONS_00019233|organism=Clytia hemisphaerica|type=transcript|length=49281bp|location=Sequence derived from alignment at sc0000321:27240..76520- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000321:27240..76520- >TCONS_00019233 ID=TCONS_00019233|Name=TCONS_00019233|organism=Clytia hemisphaerica|type=CDS|length=157356bp|location=Sequence derived from alignment at sc0000321:27240..76520- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019233 vs. Swiss-Prot (Human)
Match: ABCA1 (ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3) HSP 1 Score: 1415.59 bits (3663), Expect = 0.000e+0 Identity = 761/1698 (44.82%), Postives = 1050/1698 (61.84%), Query Frame = 1
Query: 223 SSTAEQLTMLTSFAKTAQASLQDFNSVFECYNLTDFFRPVDTEEEIITYATENRKSGFFLSSIVFMNLDNDDNIPFPKHAKYKIRYNPDYIPTTARIKSRYWKAGPGPWGRIGFQSYQYLNFGYVFLQDLIERSLMEMMTDKEVLEPGIFVQQFPYPCYIRDRFIAGLGNSMPLFMTLAWVYTISMIVKSVVYEKELRLKEVMKVMGLSNSVHWVAWFITSMATMSISVIALAILLKTGKILIHSDMSVIIFILFMFCCSSIALAFMISVFFGKANIAAACGGIIYFFTYLPYPITLWFEEQMNFSQKGLASLFSTTAFGMSFKYVARWEEQGIGAQWSNFYENPMPQDTFSLGWAVNFLVLDTFLYLILMWYFENVLPGEYGIPKPWYFPFTKTYWCGDNGKGSDRRPPYRQVRVSDSNMHLNNEGYSEMEDTRSQISGFDETFNAEPALHGKYEAEPTGLKLGVVIKELVKIYNRGKKKAVDRLNLKMFEGQVTALLGHNGAGKSTTMSILTGLFPPTSGTALVNGFDIRTQIDGVRKSLGLCPQHNVLYDYLTVEEHMWFYGRLKGMTEKELPQEIEKYLNDVGLPE-KRHDLSCNLSGGMKRKLSVAMAFIANSKTVILDEPTSGVDPYSRRAIWDLILKYKEDRSILLSTHYMDEADLLGDRINIISKGKLQCSGTSLFLKRQFGKGYFLTVTK--------------------------DQENADK------------FDIQAIGKFITSFIPGSKLHEDFETEITFLLPSAARLTGEFTNLFENLEKSLADFGIKNYGISDTTLEEVFLRACEDEQDDLLANDADSISMTGPVQSRRYGDTTSLASVNSQVRLMNAEDGLRANETNT---PRELDF--------STESKYWGPVLWIQQLKAILIKRFHHARRSRKGFFSQILLPAIFVVLSMFVSLIQPPREGLPSLTMTPEMFGEPHYVVVNNRDVNEFSERLLKNLVKNP---------SPVPCYNCSS-----TFKP--------FNHDNVTQWIPGIENECKCDNGKQQ---CPDDSYGPEPEIRSATFNDYVYDVTGRDMSDYLVKTTDEFIRQ-----------RYGAVTFG---------EHVISDIPDEMTRNFTLSGLVSAAA-------------VPRNVKVWFNHKGYHALPVYINVMNNAILRSSLSPSQNPDEYGITSINHPVDFNEEQLEDELVRRGVVNLFVAIFVILALAFVPASFVVYLIEDRVSKSKHLQLVSGLNPVVYWLANFIWDLINYLIPALCCIIIFFAFNQQAYVSAQNFPATFCLLLLYGWSMTPLMYPFSFVFDVPSTAYIVLIAINLFIGVIGTIATFILDFFGQGDQELHDINVILKKVFLIFPNYCLGRGMMDLAGNQIQADAYARFGASNFKDPFEWDITGRNILSMVFCGFLYMFITLLMQYRFFIKPWESAVDPNPKIGEEEDVKNEADKILNEERDGSSFILKTNNLTKVYKRPFLNKKLLAVDRLVFGIKPGECFGLLGVNGAGKTSTFKMLTGDTHITAGDAYVKGHSVRQKMNLVRQYMGYCPQFDALDSLLTGKELLVYYAQIRGMTHADGVKMADWAIKTLGLLPHKDKLSGDYSGGNKRKLSTALALVGSPPLIFLDEPTTGMDPGARRFLWNVVSDLLKQGKSVVLTSHSMEECETWST 4992
SS T +F +T QA ++ + EC NL P+ TE +I + E F + IVF + +I P H KYKIR + D + T +IK YW GP F+ +Y+ G+ +LQD++E++++ ++T E + G+++QQ PYPCY+ D F+ + SMPLFMTLAW+Y++++I+K +VYEKE RLKE M++MGL NS+ W +WFI+S+ + +S L ++LK G +L +SD SV+ L +F +I F+IS F +AN+AAACGGIIYF YLPY + + +++ + F+ K ASL S AFG +Y A +EEQGIG QW N +E+P+ +D F+L +V+ ++ DTFLY ++ WY E V PG+YGIP+PWYFP TK+YW G+ P Q R+S+ M E EPT LKLGV I+ LVK+Y G K AVD L L +EGQ+T+ LGHNGAGK+TTMSILTGLFPPTSGTA + G DIR+++ +R++LG+CPQHNVL+D LTVEEH+WFY RLKG++EK + E+E+ DVGLP K + LSGGM+RKLSVA+AF+ SK VILDEPT+GVDPYSRR IW+L+LKY++ R+I+LSTH+MDEAD+LGDRI IIS GKL C G+SLFLK Q G GY+LT+ K Q ++D D+ AI I + ++L ED E+T++LP A G F LF ++ L+D GI +YGIS+TTLEE+FL+ E+ D +D ++ R +GD S +R +D N+++ RE D S + K W L QQ A+L KR ARRSRKGFF+QI+LPA+FV +++ SLI PP PSL + P M+ E + V N+ + + LL L K+P +P+P C + T P F + N T P +C D K+ CP + G P R D + D+TGR++SDYLVKT + I + RYG + G ++D +M ++ L+ SA NVKVWFN+KG+HA+ ++NV+NNAILR++L +NP YGIT+ NHP++ ++QL + + V++ V+I VI A++FVPASFVV+LI++RVSK+KHLQ +SG+ PV+YWL+NF+WD+ NY++PA IIIF F Q++YVS+ N P LLLLYGWS+TPLMYP SFVF +PSTAY+VL ++NLFIG+ G++ATF+L+ F D +L++IN ILK VFLIFP++CLGRG++D+ NQ ADA RFG + F P WD+ GRN+ +M G ++ IT+L+QYRFFI+P +P E+EDV+ E +IL + G + IL+ LTK+Y+R K+ AVDR+ GI PGECFGLLGVNGAGK+STFKMLTGDT +T GDA++ +S+ ++ V Q MGYCPQFDA+ LLTG+E + ++A +RG+ + K+ +WAI+ LGL+ + +K +G+YSGGNKRKLSTA+AL+G PP++FLDEPTTGMDP ARRFLWN ++K+G+SVVLTSHSMEECE T
Sbjct: 476 SSNGSVYTWREAFNETNQA-IRTISRFMECVNLNKL-EPIATEVWLINKSMELLDERKFWAGIVFTGI-TPGSIELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRA---DPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEK-KTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTLKIFASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYWFGEESD-EKSHPGSNQKRISEICM----------------------------------EEEPTHLKLGVSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAETSDG---TLPARRNRRAFGDKQSC------LRPFTEDDAADPNDSDIDPESRETDLLSGMDGKGSYQVKGWK--LTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYNEQYTFVSNDAPEDTGTLELLNALTKDPGFGTRCMEGNPIPDTPCQAGEEEWTTAPVPQTIMDLFQNGNWTMQNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQNTADILQDLTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNTQALPPSQEVNDAIKQMKKHLKLAKDSSADRFLNSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGENPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELF--TDNKLNNINDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIRPRPVNAKLSPLNDEDEDVRRERQRIL--DGGGQNDILEIKELTKIYRR----KRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCT 2112 HSP 2 Score: 217.624 bits (553), Expect = 2.804e-56 Identity = 123/320 (38.44%), Postives = 182/320 (56.88%), Query Frame = 1
Query: 1624 IKELVKIYNRGKKKAVDRLNLKMFEGQVTALLGHNGAGKSTTMSILTGLFPPTSGTALVNGFDIRTQIDGVRKSLGLCPQHNVLYDYLTVEEHMWFYGRLKGMTEKELPQEIEKYLNDVGLPEKRHDLSCNLSGGMKRKLSVAMAFIANSKTVILDEPTSGVDPYSRRAIWDLILK-YKEDRSILLSTHYMDEADLLGDRINIISKGKLQCSGTSLFLKRQFGKGYFLTVTKDQENADKFDIQAIGKFITSFIPGSKLHEDFETEITFLLPSAARLTGEFTNLFENLEKSLADFGIKNYGISDTTLEEVFLRACEDEQDD 2580
IKEL KIY R +K AVDR+ + + G+ LLG NGAGKS+T +LTG T G A +N I + I V +++G CPQ + + + LT EH+ F+ L+G+ EKE+ + E + +GL + + N SGG KRKLS AMA I V LDEPT+G+DP +RR +W+ L KE RS++L++H M+E + L R+ I+ G+ +C G+ LK +FG GY + V N D++ + F PGS L E + + LPS+ +F L +S I++Y +S TTL++VF+ +D+ DD
Sbjct: 1914 IKELTKIYRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNP---DLKPVQDFFGLAFPGSVLKEKHRNMLQYQLPSS---LSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQSDD 2227 HSP 3 Score: 116.701 bits (291), Expect = 1.437e-25 Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 3
Query: 4971 RM*NMVNGRFQCLGSPQHLRSKFGTGYTIIIR-AKLNL-VNNVQDFITANFNEAVLKDRHLHMLEYQVPTDDLQLSQVFHKLEMLRKTGSIDDYSVTQTTLDQIFVNFARNQ 5300
RM MVNGRF+CLGS QHL+++FG GYTI++R A N + VQDF F +VLK++H +ML+YQ+P+ L+++F L +K I+DYSV+QTTLDQ+FVNFA++Q
Sbjct: 2113 RMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQDFFGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQ 2224 The following BLAST results are available for this feature:
BLAST of TCONS_00019233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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