|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019218 ID=TCONS_00019218|Name=TCONS_00019218|organism=Clytia hemisphaerica|type=transcript|length=828bp
AATGTGGCAGAACTACAGTAGATTCACGAATCATTTCTGGTGAACTTGCC
AAGAAGGATGCATGGCCTTGGCAAATCAGTTTGTATTACAATGGCCAGTT
CATGTGTGGAGGTTCAATCTTGTCACCAAGATGGGTATTGACTGCTGCTC
ATTGTGTAGATGGGTTCGATTACCGTGCTTATCAGATCGTATTGGGAGAT
TATGATCGTCGCTCAACAGATGGTGATGAACAAGTCTATAGAGCTGTTCA
AGCATTCCATCATCCTCAATGGGATCCATCTCGATTGAACAACGATATCG
CTCTCATTGAATTGGACAGACCGGCAGTCTTTGATGATCACATCCAACCC
ATCTGTTTACCAACATTGGGTGAAAAGTTACCAACTGGGTCCTCTTGTTA
TATCACTGGTTGGGGTCAACACACTGTTGGACGATCAGGACCACCAGCTT
TAGTCTTGAAGCAAGCTTTAGTGAAAACAGTTTCACCACAAACATGTTAC
AACATGAACACACAAAACATGGGTATCCCTATTACCAACCAAATGATTTG
TGCGGGCCGTGGTCCACGTGATGCCACATCTGGTTGCCATGGTGATTCAG
GTGGTCCGTTTGTTTGTAAAAACAACGGCCGTTGGGTTTTATACGGTTCT
GTATCATGGGGATCCGGCTACTGCGATAGCTCTGAAGCTTACTCTGTTTT
TGCAAAGATAAGCTCCTTTAGAGATTGGATAGATTACTACGTTCAATAtt
agaaagaatttttcaattAGCATTTATATTTTCGTATCTTCAACAATATT
CGTATATTGCATGTATTTTTCATCATGG Run BLAST on NCBI transcript from alignment at sc0000321:174963..181286+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019218 ID=TCONS_00019218|Name=TCONS_00019218|organism=Clytia hemisphaerica|type=transcript|length=6324bp|location=Sequence derived from alignment at sc0000321:174963..181286+ (Clytia hemisphaerica)
AATGTGGCAGAACTACAGTAGATTCACGAATCATTTCTGGTGAACTTGCC
AAGAAGGATGCATGGCCTTGGCAAATCAGTTTGTATTACAATGGCCAGTT
CATGTGTGGAGGTTCAATCTTGTCACCAAGATGGGTATTGACTGCTGCTC
ATTGTGTAGATGGGTTCGATTACCGTGCTTATCAGATCGTATTGGGTAAG
GACTGTAAAATTTGATAACTTTCCTCGCAAATTTATGCTTGTTATAGTAG
CCGATCCTATCGTCTATCTACACATTATCACTGAAAAAGGCAATGATTCA
GGaagcgggataaatttgaaaacgagtttagttcggggcggagtaaacag
cggcggaggtgtttacagtgttccaaactctaccgccactatttTTACCG
TAAACCACCCTGACGNCCACGGTTCTTACGTCAAATTTctaatgttttca
tgctgaaaGTCAAAAACCTACATCTTGGATATTTCACCTTTGGAAAAGAG
TTAAGCTGAAGGATTCTGTAGGGAAAATATCTGATTCTCCCTTCAAATTC
ATCTTTAAAGGAGGTTATAGGCGATCAAAAATGAAACTCCCCTATTCATT
TTATCAGtttcctaattttttatttaaattcagATACTACTAATGCTGGT
GGAAACACAAAACATGGTCGTAAGTATGAAAATATTACAATATATCTatg
ttttcaaacttttaaaagcCGCTCTATAAAGAATAAAGGAACTATCTTCC
CGTCCAAACCAAAAATTAATTCGAACTTTATACCTCCATTGTGGCTCCAA
TAAAACGAATTTCAGGAAAATGATTTGGTAATTTCGGAAAGTTTAACAGC
AAAGGCCAAACAAACATGATGTGACTCGTGGTCTAACAAACTTTGACACA
AAACTTTAAAGTTTAATTAAAGAATCCATGCTAAAAACGTCACTCTACCA
TTTAGAATGTGGCAGAACTACAGTAGATTCACGAATCATTTCTGGTGAAC
TTGCCAAGAAGGATGCATGGCCTTGGCAAATCAGTTTGTATTACAATGGC
CAGTTCATGTGTGGAGGTTCAATCTTGTCACCAAGATGGGTATTGACTGC
TGCTCATTGTGTAGATGGGTTCGATTACCGTGCTTATCAGATCGTATTGG
GTAAGGACTGTAAAATTTGATAACTTTCCTCGCAAATTTATGCTTGTTAT
AGTAGCCGATCCTATCGTCTATCTACACATTATCACTGAAAAAGGCAATG
ATTCAGGaagcgggataaatttgaaaacgagtttagttcggggcggagta
aacagcggcggaggtgtttacagtgttccaaactctaccgccactatttT
TACCGTAAACCACCCTGACGCCCTGACTCTGCGCATATACTTTCtcgcgt
ttactgaccctctaaacGGATGATAGCATCGTCTATTGTTATAGTAACTA
AGAATTCTGGTCTCCTGTTTATGCAGATCAGAAATTATTTTATACTAGAC
GTGTCGTGTTTTCAAGTACGTGAAATACATGAATATTTGGTAAGGTGTTC
ACTAGCAAATAATGtgtaatgaataatgaataagtGAACAcaaagggact
gggttcgagtttgaaaaaatcttcttttttttcttgttcagGAGATTATG
ATCGTCGCTCAACAGATGGTGATGAACAAGTTNAAAATGATTTGGTAATT
TCAGAAAGTTTAACAGCAAAGGCCAAACAAACATGATGTGACTCGTGGTC
TAACAAACTTTGACACAAAACTTTAAAGTTTAATTAAAGAATCCATGCTA
AAAACGTCACTCTACCATTTAGAATGTGGCAGAACTACAGTAGATTCACG
AATCATTTCTGGTGAACTTGCCAAGAAGGATGCATGGCCTTGGCAAATCA
GTTTGTATTACAATGGCCAGTTCATGTGTGGAGGTTCAATCTTGTCACCA
AGATGGGTATTGACTGCTGCTCATTGTGTAGATGGGTTCGATTACCGTGC
TTATCAGATCGTATTGGGTAAGGACTGTAAAATTTGATAACTTTCCTCGC
AAATTTATGCTTGTTATAGTAGCCGATCCTATCGTCTATCTACACATTAT
CACTGAAAAAGGCAATGATTCAGGaagcgggataaatttgaaaacgagtt
tagttcggggcggagtaaacagcggcggaggtgtttacagtgttccaaac
tctaccgccactatttTTACCGTAAACCACCCTGACGCCCTGACTCTGCG
CATATACTTTCtcgcgtttactgaccctctaaacGGATGATAGCATCGTC
TATTGTTATAGTAACTAAGAATTCTGGTCTCCTGTTTATGCAGATCAGAA
ATTATTTTATACTAGACGTGTCGTGTTTTCAAGTACGTGAAATACATGAA
TATTTGGTAAGGTGTTCACTAGCAAATAATGtgtaatgaataatgaataa
gtGAACAcaaagggactgggttcgagtttgaaaaaatcttcttttttttc
ttgttcagGAGATTATGATCGTCGCTCAACAGATGGTGATGAACAAGTCT
ATAGAGCTGTTCAAGCATTCCATCATCCTCAATGGGATCCATCTCGATTG
AACAACGATATCGCTCTCATTGAATTGGACAGACCGGCAGTCTTTGATGA
TCACATCCAACCCATCTGTTTACCAACATTGGGTGAAAAGTTACCAACTG
GGTCCTCTTGTTATATCACTGGTATGTATTACGTATATGTCTCTATTTAA
TAGGATTCGTGCATCTGTTACATACTATTTAATGTTATCCAATTTAAAGG
gggaaaatgaatgaaataagAACTGAATCTCTAGGTAGGATTTGAAGTCA
TTAAAAGTTGCGCTGTCCGTGTGTATTTCACACAaatgccagattgaaag
taaaatttccaccagattttcaaaaaacaaaggaatcgctagGTTCAAAC
CGTCaacaaaaatacggcgcatattttaaaggcttcactttttcttgcct
gagcaaggttaaagattcgcctCTTACTCTTTGGgtttctacagggtgtc
cctaattaaagtatcgagtcgaaacacaactatgagtagaaagttttatg
tgcgtgttcacaaaattgtattttaagctctccctctttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatacgttgtaactaccttt
tgtaataagcctgtgtgatggagaacgttcttatattttagcgataacac
acacaaacttttctactcaatcgcatgttcaaaccacagatatctgtaaa
gcccgaagggctagataggcaactttaagctttctcgagcaaaaaaaagt
gaagctaaaatttgactttttaaattttgtgccgatggataggatctagc
attttaattgttttcagagCGCGAGATctaaaaaagtaggcggcaaacac
tatttcacatctctcaaaccggtgaaattgcatattttagtcacgtgact
ttggtagaggaaatccttccaaacctaggcttcacttttcgataaaagcc
gcaaatctagcccttcgggctttagaGATCTGtggttcaaactcgatact
ttaattagggacaccctgtattacGTTGGGAAAAATGCACAAATATGTGC
AGCTTTCCAAGAAAAGacgttgaaaaaattatttttcgcgTCATCATTCA
ATCGACTTGGGAATTCAATAATTCTTTTCCATTGTTGTTGCCTTTGTTAA
ACTTATAATCTCAATTGACAAAAGAGTACTAAAAACCATAAaagttgatt
actgcagtgacgtagaaaattatcatgtactaaaaacacgaatcctatta
agggctctgaccatagtcaaaaaattgattttggtaatttgagcataaaa
gttatgtttcaggttcctttacactttcaacaaagaattgcctttacaaa
tttattttttatcaaatctcttaaaagtaattaagaatttaattgcaaaa
atgacgttatgaactttaaaaagacgttaataatatgttgcatcgccctt
ttttataaaaagtgctaagttttaatgggtaattaacctttttttcaaac
tgtccgcaaagaattgaactgctttaaatttttcagaaatttttctaaat
tgatgcaTCAAAAGTAATAGCTGCTTCTCTATGAgcaattgggatgaaaa
atttgtcaaaaagcacttttttcaagattttgagacaagtaagctttaaa
gaaaaattttccgaaaatttatttttaattcggTAAAAGATTACACCATC
Taccacaaaagtttttcaaaatatttctttttcgaccaaactaagctctt
caaagttgaaatacttttcgtcgcaaaagtcttcattttcttcttcatca
aattttttctttgtgattcttaaattttcaaactcaagaataattggcct
aacagaaaatgtataatgtGTCAAAGTTTTGTTAGCTACATCAgacagaa
atttatattttgtacatggggccattcaaaaagtacgttcgtccaaattt
ccctattttcagacccccctccccccttgttcGTCAGCGTTCGTTTTGAA
GTACCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCC
CTCGGcgacgaacgtactttttgaatggcccccatgacaaatatcaaaat
tcacgatggtcagagcccttaagtaggCTAATTCTCACACGATCGGCATC
GTAGACATTCATAACCACCCAGAAAGTTGCGACTTTTTCAAGGGTAGCTG
ACAACAGTCCATCTTTGAACCATCCTTATTCTCTTCAATTTCCATGCTTT
Gacgaaaaagaaatattttaaaatcgtttctaaattattttactatattt
tcagGTTGGGGTCAACACACTGTTGGACGATCAGGACCACCAGCTTTAGT
CTTGAAGCAAGCTTTAGTGAAAACAGTTTCACCACAAACATGTTACAACA
TGAACACACAAAACATGGGTATCCCTATTACCAACCAAATGATTTGTGCG
GGCCGTGGTCCACGTGATGCCACATCTGGTTGCCATGGTGATTCAGGTGG
TCCGTTTGTTTGTAAAAACAACGGCCGTTGGGTTTTATACGGTTCTGTAT
CATGGGGATCCGGCTACTGCGATAGCTCTGAAGCTTACTCTGTTTTTGCA
AAGATAAGCTCCTTTAGAGATTGGATAGATTACTACGTTCAATAttagaa
agaatttttcaattAGCATTTATATTTTCGTATCTTCAACAATATTCGTA
TATTGCATGTATTTTTCATCATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019218-exon-sc0000321-1491911889:174963..175157 | TCONS_00019218-exon-sc0000321-1491911889:174963..175157 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1510915933:174963..175157 | TCONS_00019218-exon-sc0000321-1510915933:174963..175157 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1575043694:174963..175157 | TCONS_00019218-exon-sc0000321-1575043694:174963..175157 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1491911889:177471..177683 | TCONS_00019218-exon-sc0000321-1491911889:177471..177683 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1510915933:177471..177683 | TCONS_00019218-exon-sc0000321-1510915933:177471..177683 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1575043694:177471..177683 | TCONS_00019218-exon-sc0000321-1575043694:177471..177683 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1491911889:180867..181286 | TCONS_00019218-exon-sc0000321-1491911889:180867..181286 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1510915933:180867..181286 | TCONS_00019218-exon-sc0000321-1510915933:180867..181286 | Clytia hemisphaerica | exon |
| TCONS_00019218-exon-sc0000321-1575043694:180867..181286 | TCONS_00019218-exon-sc0000321-1575043694:180867..181286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000321 | supercontig | sc0000321:174963..181286 + |
Blast
BLAST of TCONS_00019218 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.247e-52 Identity = 97/242 (40.08%), Postives = 134/242 (55.37%), Query Frame = 3
Query: 27 RIISGELAKKDAWPWQISLYYNGQF-MCGGSILSPRWVLTAAHCVDGFDYRAYQIVLGDYDRRSTDGDEQVYRAVQAFHHPQWDPSRLNNDIALIELDRPAVFDDHIQPICLPTLGEKLPTGSSCYITGWGQHTVGRSGPPALVLKQALVKTVSPQTCYNMNTQNMGIPITNQMICAGRGPRDATSGCHGDSGGPFVCKNNGRWVLYGSVSWGSGYCDSSEAYSVFAKISSFRDWIDYYVQY 749
RI++GE A +WPWQ+SL + F CGGS++S WV+TAAHC + +VLG+YDR S QV +A HP W+ + +NND+ L++L PA + I P+CL + E L G +C TGWG+ + + PA + + AL P N Q G IT+ MICAG S C GDSGGP VC+ WVL G VSWG+ C+ A +V+ ++S F WI+ + Y
Sbjct: 33 RIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVAL-----PLVTVNQCRQYWGSSITDSMICAGGA---GASSCQGDSGGPLVCQKGNTWVLIGIVSWGTKNCN-VRAPAVYTRVSKFSTWINQVIAY 263
The following BLAST results are available for this feature:
|
