TCONS_00019214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019214
Unique NameTCONS_00019214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019214 ID=TCONS_00019214|Name=TCONS_00019214|organism=Clytia hemisphaerica|type=transcript|length=887bp
ATgtacaagaaaaatcaagttttcgAATTAGCGACGTCGCTTTATGATTC
TGGAATATCAGAGAAGAAATCAAAGGCGTTGATATTGGATTTGATTAAGA
GAGCGTGTAGTATCAACCATGCAGTGTTTGATCTCGTACTGAAGAATGGA
CTTCTATCATGGATCAACTTGCAATTGGAAAAacattCTTCACCGGAGAA
TAAAGGAAAGTTCATTGATATTTTGGACACTCTGGCTTGCACACTGGAGA
AAGAGCACAAGAAAGAAACTGGCCAATCACAAACCAGTGTTCCAAGACAA
CTACCCATTGAAATGTTAACTATATGTTGCAATTGTTTGAACGACCATAA
GTCTTTGGCAAAAGAAAGTTTGACGAAATTGTGTCATATTTTGAATTGGT
TGTTGCATCTTCCCAATCACTTCGGTAACTTGGTAACAACGTTGAATCTG
GAAGAGAAAAAGAGAATCCTTTCCTTGTTCGAATCGAACATCATTGATGG
TGACGAAAACGAAAAAGttgagaatttcaaaacatttgctAAAGTCTTga
ttaaattattaaaaaaatcagaTGCAGGTGGCTTATTAGAGGACTTCTCA
TGGACAAACCTGAAGAAGAATCTACCAGAGGTGGATCAAGGGTTTACTGG
TGATGTTTCATTAGACGTGCTCGGCGTGTGTAAGAAACAACCTTTCGAAA
TGAAATTTGTAAATCAATTTCTCCTGtaagtttttatgattgttcTTTTT
ATGAcaagttttatattttataatcTTTGGAAACAGTCATTTTTATACCA
AAAAGGGATATTTTATGGTGAATTTTTAGAtactttgaaaattgaaagat
gCAGTGATGATAAACTGGTTCTATAGcatgaaatcaa
Run BLAST on NCBI

transcript from alignment at sc0000321:167484..170108+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019214 ID=TCONS_00019214|Name=TCONS_00019214|organism=Clytia hemisphaerica|type=transcript|length=2625bp|location=Sequence derived from alignment at sc0000321:167484..170108+ (Clytia hemisphaerica)
ATgtacaagaaaaatcaagttttcgAATTAGCGACGTCGCTTTATGATTC
TGGAATATCAGAGAAGAAATCAAAGGTATTTTTAAACATGATAATTTTAT
CAAAGGGACACTATTTTAACGTCCCAAAATCAGCAGGTGCGTCAATCCTT
CGAAGGTCTGTCGATGCTTTTTGTACCTCCAGTGATGTTTTTACCAACAT
TATTTCGATTAATTCTTGGTACTAAGCTCTACTTCTGCGATAGGTATTTT
TCGATTCCCGAAGTTGAAGAATCGTCCATCGAGTGTGGTACGTGCGTATT
TACGTTTACCAATCCAAACGTTCTCTCAACAATCAAACGAAAACACTTct
gctgaaaatgaaaatattagatATTTGAGATATGAACCAAAACTGTTTAA
AAACAAACCCTCCTAaattgtgtgccagcttggttttaacttatttcaaa
gtttcaccatttgatagaccttttcataaattacgtcacaaaaaTCACTT
Accttcaaacaattaccatggtgattatgtctctggtttttttatgaata
ggaagtagttttgataaaatccgctgggagttaatcaccatggtaataat
ttcaaaacgaggcaagtgatgttcgtaacgtaatttatgaaaaggactat
tcatgatatgcgatAGGAGAGTCTTTAGGATAGGAGAGTTTTCCACctaa
tacgtcacttaaaaaatagaaaaagtgacatattgggtggaaaatcttaa
aaattcttggaagactctccagtggtgcatatcatgaattgttgaTCAAA
CTTATGGATTGTTAGCTGTTAGTACGGTATGAACACTTTTAAATGACTTT
CCATTTTAGGCGTTGATATTGGATTTGATTAAGAGAGCGTGTAGTATCAA
CCATGCAGTGTTTGATCTCGTACTGAAGAATGGACTTCTATCATGGATCA
ACTTGCAATTGGAAAAGTAAGTTTAATCCAGTCAATTGTatctacagttg
acgctctctaatttgacgttctactattcgataggctcccttattcgctg
aaatttaaagtcctcatcaacaagaaactctcataaacgacgctcacTTA
CTCGAtggaaatccaattccccttgaagatcgaattagagagcgtcaact
atacATCCATGGACTAATGAACTATAGCAGTGTTAAAAGAccttccgtct
cagacggatttttGTCTCAGCAAAGTAAAGAGGCTTTTCCGACTCAAAAT
TCTGCATTGCATATATTCACGAAAATGtatgtgtaaaatccattttccgt
ctccACGACCACTAACCTTTAACCACTTACCGTTGTAACAAACCTATGGC
TATGCAATTTTGcgtaaaaagatattttttctctgaatttttTTCGTCCG
AAAGTGTCAGCCTAATGATGTTTCTATACTTCAGCCGAGCAGATTCTAAG
ATCTTGTGATAAAGCTCttgttgtattttacagacattCTTCACCGGAGA
ATAAAGGAAAGTTCATTGATATTTTGGACACTCTGGCTTGCACACTGGAG
AAAGAGCACAAGAAAGAAACTGGCCAATCACAAACCAGTGTTCCAAGACA
ACTACCCATTGAAATGTTAACTATATGTTGCAATTGTTTGAACGACCATA
AGTAAGAAAATTGCAAACTTTTACACAAAATTTCATCATAGAGAAAGACC
CTTTTCCGGCAGTACCACAGTTGATCCCTGTTGCTTGTTACCAAGACGGA
AGAATTCATTGTTTTGAATGTTATCAAATgcaatctttttttcaaattta
tgaaattgaaaaatttagaaaaaaacattgaaaattgcATTAAAATTACT
GTTTGTACGTACTGGTATGTAATCACTTAAACTTCCCCCCAATGGCAATG
TTGAGATCGAACGGCTGTCTCAGTCTCTTCTGTCCATTCAATATTGCCAA
GAGGGGAAGAGAGGGCCGAAGGCTCATCAATTGAGTCCGTGATtgtattt
cttaaaaaaataaaattactaAATCACATTTCATTGACATACAGGCCTCT
TCTATAAAACTTGTCTATATTTATTGTCTTTTCACTAGGTCTTTGGCAAA
AGAAAGTTTGACGAAATTGTGTCATATTTTGAATTGGTTGTTGCATCTTC
CCAATCACTTCGGTAACTTGGTAACAACGTTGAATCTGGAAGAGAAAAAG
AGAATCCTTTCCTTGTTCGAATCGAACATCATTGATGGTGACGAAAACGA
AAAAGttgagaatttcaaaacatttgctAAAGTCTTgattaaattattaa
aaaaatcagaTGCAGGTGGCTTATTAGAGGACTTCTCATGGACAAACCTG
AAGAAGAATCTACCAGAGGTGGATCAAGGGTTTACTGGTGATGTTTCATT
AGACGTGCTCGGCGTGTGTAAGAAACAACCTTTCGAAATGAAATTTGTAA
ATCAATTTCTCCTGtaagtttttatgattgttcTTTTTATGAcaagtttt
atattttataatcTTTGGAAACAGTCATTTTTATACCAAAAAGGGATATT
TTATGGTGAATTTTTAGAtactttgaaaattgaaagatgCAGTGATGATA
AACTGGTTCTATAGcatgaaatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010788XLOC_010788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019214-exon-sc0000321-1491911889:167484..167558TCONS_00019214-exon-sc0000321-1491911889:167484..167558Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1510915933:167484..167558TCONS_00019214-exon-sc0000321-1510915933:167484..167558Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1575043694:167484..167558TCONS_00019214-exon-sc0000321-1575043694:167484..167558Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1491911889:168343..168449TCONS_00019214-exon-sc0000321-1491911889:168343..168449Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1510915933:168343..168449TCONS_00019214-exon-sc0000321-1510915933:168343..168449Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1575043694:168343..168449TCONS_00019214-exon-sc0000321-1575043694:168343..168449Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1491911889:168967..169134TCONS_00019214-exon-sc0000321-1491911889:168967..169134Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1510915933:168967..169134TCONS_00019214-exon-sc0000321-1510915933:168967..169134Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1575043694:168967..169134TCONS_00019214-exon-sc0000321-1575043694:168967..169134Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1491911889:169572..170108TCONS_00019214-exon-sc0000321-1491911889:169572..170108Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1510915933:169572..170108TCONS_00019214-exon-sc0000321-1510915933:169572..170108Clytia hemisphaericaexon
TCONS_00019214-exon-sc0000321-1575043694:169572..170108TCONS_00019214-exon-sc0000321-1575043694:169572..170108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:167484..170108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.81658	1.84102	0.910934	0.899113	0	0	0.000356257	0.745629	2.23657	1.41389	0	0.811355	2.12277	3.76334	1.16973	2.7326	0.674814	1.26909	0.943284	0.815062	1.42775	2.30263	6.43389	3.28074	2.99369	2.33919	0	0.395557	2.87206	3.27938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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