TCONS_00019203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019203
Unique NameTCONS_00019203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019203 ID=TCONS_00019203|Name=TCONS_00019203|organism=Clytia hemisphaerica|type=transcript|length=920bp
ATTGGCGTAGTGAACAAATTGCAAGTCGTTGTGTCAAGTGTTGTCTCAGA
GAGTGCTACACCTAAAGGTTATGAAGATGTGTACAAACTTATAGAAGCTT
TGAGAAAAGATGAAGTTAAAGCTATTGCACTGGATCGGTTCATGTACGCA
TGGACTGAGAGTAGAGGCTTATTACCAGCGCATACTGAAGTCAAATGGAG
GGTCAAGTTATGTGGGGAAGCGCTTGGCTTGTTAAGCAAGACCAATGATA
TCAAGAAAATGCAAGATCGCTTCAATCAAAACTCATTGGAAGTTCTTTAC
AAAAGTCCAGAACATGTAAAACACCCAGCCACCGAAGAGGAGGAGCACCA
TGTTGTGGAAATCTTTCAAGCAGATAAGAGTTTCGTTTACACAATGTGTG
GAGTAGCTTTTCTCTCAATCTTTTGTGTTTGTGTCGGTATCTTTGTCAAT
GAAAAGAAATGGAAAGCTTCTCGTGAAGGATTCCGTAGATTCTCACAACG
CTGGCAACAACGTCCACAAGAACATGCCAGAAACAAAGATGCTTATGTTG
TGGGTAATAATAACGTAGAAACGAAATCCGTTGTCATGAGAAGCACTGCA
GCTTAAATTAAAAGTGACCAAATTGTGTCTGGAGATACGTAGAACAGAAT
TTATGtaaataaaaacccataaaaatttATATGGATTTTTATAAACTTTA
CTAATTGCTTAATTTCTCTTTTAAAACCGATTGTTATTACCTTAAGAGAA
AGAAATTTCATGTATTCAAATCATTCTAAACTACAATAAGAGtttgagga
ttttattttacttaaaaCTGTACCGCATTTTCCTTGCACATTGTATAAAT
GAGAGATTAAAGATCTTTGCACTGACCAATTTCCAGGCCTCCACATGTAA
ATAAATGATTACGAAAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00019203-protein

>TCONS_00019203-protein ID=TCONS_00019203-protein|Name=TCONS_00019203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
IGVVNKLQVVVSSVVSESATPKGYEDVYKLIEALRKDEVKAIALDRFMYA
WTESRGLLPAHTEVKWRVKLCGEALGLLSKTNDIKKMQDRFNQNSLEVLY
KSPEHVKHPATEEEEHHVVEIFQADKSFVYTMCGVAFLSIFCVCVGIFVN
EKKWKASREGFRRFSQRWQQRPQEHARNKDAYVVGNNNVETKSVVMRSTA
A
Run BLAST on NCBI

transcript from alignment at sc0000321:72..3587+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019203 ID=TCONS_00019203|Name=TCONS_00019203|organism=Clytia hemisphaerica|type=transcript|length=3516bp|location=Sequence derived from alignment at sc0000321:72..3587+ (Clytia hemisphaerica)
ATTGGCGTAGTGAACAAATTGCAAGTCGTTGTGTCAAGTGTTGTCTCAGA
GAGTGCTACACCTAAAGGTATGTCGCAattgaccttttcataaattgcgt
cacaagcaacgcttacctcgttttcaaaagtAGATTTTGTAATTAATCCC
CAGATGAGTTCATAAGAAGTTTACTCTATTTATGAAAGTAACACTTGAGA
ACTCAAGGAacttaatcaccttggtaatggtttcaaaacgaggcagaggt
tgcactcaaaataatttatggaAAGTTCTATTGAatgtaaaacatgaaaa
agaggTCTATTCACAATCACAAATtggtactttaatgggataaattttcg
cgggcaTTAAATTTAGTGGTTGTCATTAAACGTTTTAAAAGTACTTATTT
GACATTTGGcgagttttttttcaaaaatatttcgaagATAAGGCCAAATA
TATCTATCTCACAACGTTTGATATCTCGTTATAGGTTATGAAGATGTGTA
CAAACTTATAGAAGCTTTGAGAAAAGATGAAGTTAAAGGTACTTCTATCC
TTTCCGTCATTTTATACGTAATGCTTCAAGGGTTGTCTTTCATttcaaca
agcaacatgctgaatggacctacctgatgatgaaagctagataataaggc
aataaggagaacaagtaatactttaatggacctacctatttataaaacga
ataattagaatttaatgaaagtaatgtataattttaaatttcgatttata
taNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNacggacggacggacaagggtt
aatttaaaggactaccttagggtaggtccaaaaagaagaaGTACTACGAA
TCAAGCATTTTTTAACAAGCAACCAGGTTGATAAGCctcttaaattttat
ttcactatttcgtaaagtaaaagctttatTGATAACCTTAAACATGGTAT
AATATCAGCTAAGCAAACCTAAGCCCGACCCGAAaaatggagttgcttat
aaaaaatatactaGTCTTAGCagaattaaattcaaaagaaaatctcACAT
CGCACATGAAATTTTGTTCCACGCTGATGATAAATATCTTAAAATCCTTA
GCTATTGCACTGGATCGGTTCATGTACGCATGGACTGAGAGTAGAGGCTT
ATTACCAGCGCATACTGAAGTCAAATGGAGGGTCAAGTTATGTGGGGAAG
CGCTTGGCTTGTTAAGCAAGACCAATGATATCAAGAAAATGCAAGATCGC
TTCAATCAAAACTCATTGGAAGTTCTTTACAAAAGTCCAGTAAGTTTTAG
TTTTTCCTTTCTCCAAAATATTCCGATGTCTTCGACCCGCTGGGACCCTT
GCCCCATTGAAAATTTGACCAGAATTTCGTCCCTGTTGGAAAATTACTCC
ACAATTTTACTCTGTCATCCCCACTGTGGGCAAAGTTAAACCGACAGGGT
TGTTCCAAAGGTGTACTTATAAATTCTGAGAGTAACAGAGATACCCAATT
AACAAAATGACtcctcaaaaaaattgaaaatgacacTTAAAAAAAGAACA
TTAAGCTCACCTTCTTCACTGAACTGGATCATGCCATCTCAGAATCAACC
CAATAAAATCTCCATATGATTAAGAATTTACCAACATCAAATTTaagtca
ttttttttcttttaattattcTGAAACACAAAAGTAGAGAATTAGAAATA
TCTCATTACCGGGATTAAGAATCAGCTTGTATCCACTCATTAAATGGAGG
GGGGATTTTCAGCTTGCTAAGCTACCAACCTATTAGTAAGGTGTCATAAT
ATTCACGCAGTGACTGTGTGACCTCCCCCCTGAATTATTTTTCGCTTCAA
TACAGGAACATGTAAAACACCCAGCCACCGAAGAGGAGGAGCACCATGTT
GTGGAAATCTTTCAAGCAGATAAGAGTTTCGTTTACACAATGTGTGGAGT
AGCTTTTCTCTCAATCTTTTGTGTTTGTGTCGGTATCTTTGTCAATGAAA
AGAAATGGAAAGCTTCTCGTGAAGGATTCCGTAGATTCTCACAACGCTGG
CAACAACGTCCACAAGAACATGCCAGAAACAAAGATGCTTATGTTGTGGG
TAATAATAACGTAGAAACGAAATCCGTTGTCATGAGAAGCACTGCAGCTT
AAATTAAAAGTGACCAAATTGTGTCTGGAGATACGTAGAACAGAATTTAT
GtaaataaaaacccataaaaatttATATGGATTTTTATAAACTTTACTAA
TTGCTTAATTTCTCTTTTAAAACCGATTGTTATTACCTTAAGAGAAAGAA
ATTTCATGTATTCAAATCATTCTAAACTACAATAAGAGtttgaggatttt
attttacttaaaaCTGTACCGCATTTTCCTTGCACATTGTATAAATGAGA
GATTAAAGATCTTTGCACTGACCAATTTCCAGGCCTCCACATGTAAATAA
ATGATTACGAAAGTAT

Coding sequence (CDS) from alignment at sc0000321:72..3587+

>TCONS_00019203 ID=TCONS_00019203|Name=TCONS_00019203|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0000321:72..3587+ (Clytia hemisphaerica)
ATTGGCGTAGTGAACAAATTGCAAGTCGTTGTGTCAAGTGTTGTCTCAGA
GAGTGCTACACCTAAAGGTTATGAAGATGTGTACAAACTTATAGAAGCTT
TGAGAAAAGATGAAGTTAAAGCTATTGCACTGGATCGGTTCATGTACGCA
TGGACTGAGAGTAGAGGCTTATTACCAGCGCATACTGAAGTCAAATGGAG
GGTCAAGTTATGTGGGGAAGCGCTTGGCTTGTTAAGCAAGACCAATGATA
TCAAGAAAATGCAAGATCGCTTCAATCAAAACTCATTGGAAGTTCTTTAC
AAAAGTCCAGAACATGTAAAACACCCAGCCACCGAAGAGGAGGAGCACCA
TGTTGTGGAAATCTTTCAAGCAGATAAGAGTTTCGTTTACACAATGTGTG
GAGTAGCTTTTCTCTCAATCTTTTGTGTTTGTGTCGGTATCTTTGTCAAT
GAAAAGAAATGGAAAGCTTCTCGTGAAGGATTCCGTAGATTCTCACAACG
CTGGCAACAACGTCCACAAGAACATGCCAGAAACAAAGATGCTTATGTTG
TGGGTAATAATAACGTAGAAACGAAATCCGTTGTCATGAGAAGCACTGCA
GCTTAAATTGGCGTAGTGAACAAATTGCAAGTCGTTGTGTCAAGTGTTGT
CTCAGAGAGTGCTACACCTAAAGGTTATGAAGATGTGTACAAACTTATAG
AAGCTTTGAGAAAAGATGAAGTTAAAGCTATTGCACTGGATCGGTTCATG
TACGCATGGACTGAGAGTAGAGGCTTATTACCAGCGCATACTGAAGTCAA
ATGGAGGGTCAAGTTATGTGGGGAAGCGCTTGGCTTGTTAAGCAAGACCA
ATGATATCAAGAAAATGCAAGATCGCTTCAATCAAAACTCATTGGAAGTT
CTTTACAAAAGTCCAGAACATGTAAAACACCCAGCCACCGAAGAGGAGGA
GCACCATGTTGTGGAAATCTTTCAAGCAGATAAGAGTTTCGTTTACACAA
TGTGTGGAGTAGCTTTTCTCTCAATCTTTTGTGTTTGTGTCGGTATCTTT
GTCAATGAAAAGAAATGGAAAGCTTCTCGTGAAGGATTCCGTAGATTCTC
ACAACGCTGGCAACAACGTCCACAAGAACATGCCAGAAACAAAGATGCTT
ATGTTGTGGGTAATAATAACGTAGAAACGAAATCCGTTGTCATGAGAAGC
ACTGCAGCTTAAATTGGCGTAGTGAACAAATTGCAAGTCGTTGTGTCAAG
TGTTGTCTCAGAGAGTGCTACACCTAAAGGTTATGAAGATGTGTACAAAC
TTATAGAAGCTTTGAGAAAAGATGAAGTTAAAGCTATTGCACTGGATCGG
TTCATGTACGCATGGACTGAGAGTAGAGGCTTATTACCAGCGCATACTGA
AGTCAAATGGAGGGTCAAGTTATGTGGGGAAGCGCTTGGCTTGTTAAGCA
AGACCAATGATATCAAGAAAATGCAAGATCGCTTCAATCAAAACTCATTG
GAAGTTCTTTACAAAAGTCCAGAACATGTAAAACACCCAGCCACCGAAGA
GGAGGAGCACCATGTTGTGGAAATCTTTCAAGCAGATAAGAGTTTCGTTT
ACACAATGTGTGGAGTAGCTTTTCTCTCAATCTTTTGTGTTTGTGTCGGT
ATCTTTGTCAATGAAAAGAAATGGAAAGCTTCTCGTGAAGGATTCCGTAG
ATTCTCACAACGCTGGCAACAACGTCCACAAGAACATGCCAGAAACAAAG
ATGCTTATGTTGTGGGTAATAATAACGTAGAAACGAAATCCGTTGTCATG
AGAAGCACTGCAGCTTAAATTGGCGTAGTGAACAAATTGCAAGTCGTTGT
GTCAAGTGTTGTCTCAGAGAGTGCTACACCTAAAGGTTATGAAGATGTGT
ACAAACTTATAGAAGCTTTGAGAAAAGATGAAGTTAAAGCTATTGCACTG
GATCGGTTCATGTACGCATGGACTGAGAGTAGAGGCTTATTACCAGCGCA
TACTGAAGTCAAATGGAGGGTCAAGTTATGTGGGGAAGCGCTTGGCTTGT
TAAGCAAGACCAATGATATCAAGAAAATGCAAGATCGCTTCAATCAAAAC
TCATTGGAAGTTCTTTACAAAAGTCCAGAACATGTAAAACACCCAGCCAC
CGAAGAGGAGGAGCACCATGTTGTGGAAATCTTTCAAGCAGATAAGAGTT
TCGTTTACACAATGTGTGGAGTAGCTTTTCTCTCAATCTTTTGTGTTTGT
GTCGGTATCTTTGTCAATGAAAAGAAATGGAAAGCTTCTCGTGAAGGATT
CCGTAGATTCTCACAACGCTGGCAACAACGTCCACAAGAACATGCCAGAA
ACAAAGATGCTTATGTTGTGGGTAATAATAACGTAGAAACGAAATCCGTT
GTCATGAGAAGCACTGCAGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010784XLOC_010784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019203-exon-sc0000321-1491911889:72..138TCONS_00019203-exon-sc0000321-1491911889:72..138Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1510915933:72..138TCONS_00019203-exon-sc0000321-1510915933:72..138Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1575043694:72..138TCONS_00019203-exon-sc0000321-1575043694:72..138Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1491911889:556..609TCONS_00019203-exon-sc0000321-1491911889:556..609Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1510915933:556..609TCONS_00019203-exon-sc0000321-1510915933:556..609Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1575043694:556..609TCONS_00019203-exon-sc0000321-1575043694:556..609Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1491911889:2223..2410TCONS_00019203-exon-sc0000321-1491911889:2223..2410Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1510915933:2223..2410TCONS_00019203-exon-sc0000321-1510915933:2223..2410Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1575043694:2223..2410TCONS_00019203-exon-sc0000321-1575043694:2223..2410Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1491911889:2977..3587TCONS_00019203-exon-sc0000321-1491911889:2977..3587Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1510915933:2977..3587TCONS_00019203-exon-sc0000321-1510915933:2977..3587Clytia hemisphaericaexon
TCONS_00019203-exon-sc0000321-1575043694:2977..3587TCONS_00019203-exon-sc0000321-1575043694:2977..3587Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019203-proteinTCONS_00019203-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:72..3587 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.299719	0.535914	0.621895	0.0553051	0.269673	0.106388	0.449972	0.180583	0.294456	0.0521614	0.25358	0.166638	1.00899	0.590757	0.284063	0.671084	0.943729	1.85564	6.76121	8.52254	3.61621	3.28932	1.33319	1.90158	1.85271	2.40282	0.27415	0.219354	0.166537	0.113183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top