TCONS_00019192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019192
Unique NameTCONS_00019192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019192 ID=TCONS_00019192|Name=TCONS_00019192|organism=Clytia hemisphaerica|type=transcript|length=417bp
CATGAAAAACAAACACATGTTCCAAAAGTGAATCGGACTAACTGATGGCT
GATTTGCATGTGTGTGATATGGATaaccaataaaaacaaaagtaggCGGG
AGAGAGGTATGGTTTGGACATTATATTCGATATAACTTGTGTGTGTGTTT
TCAACAATTATGATTCTGATGGATAAAAATATAACTTTACTTTCGCTTTG
AAGAAGTGCACAGTTGATTTAAAATTGATGCTTTGATTCTTTTGGTTCAA
TTTGGTTGGAGATAATGATATGCAAAACTTTTTAGTTGATAtttattgct
tttttttattttttgttacagTTGCTAGATGAAAAAACCCTAAGAGACCT
TATTtagttgtaatttttttaactgtTCTGCTACACATTGTTTTTAGAGA
TATATAAAAAGAAGCAT
Run BLAST on NCBI

transcript from alignment at sc0000320:337252..337836-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019192 ID=TCONS_00019192|Name=TCONS_00019192|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at sc0000320:337252..337836- (Clytia hemisphaerica)
CATGAAAAACAAACACATGTTCCAAAAGTGAATCGGACTAACTGGTATGA
TTATTTAAATACTGCAGTCCTATGAAAAATCACTCACAATGACTTAAAAA
ATTGCTTGGTAATGATCGAAAGTTGCGGTGGCAAAATATGACTATTGAAT
TTTCTTCGTTCAAAAAAGCACACACTCTTTGTGTATAGATTGCAAACATT
GTATATATTTAGATGGCTGATTTGCATGTGTGTGATATGGATAACCAATA
AAAACAAAAGTAGGCGGGAGAGAGGTATGGTTTGGACATTATATTCGATA
TAACTTGTGTGTGTGTTTTCAACAATTATGATTCTGATGGATAAAAATAT
AACTTTACTTTCGCTTTGAAGAAGTGCACAGTTGATTTAAAATTGATGCT
TTGATTCTTTTGGTTCAATTTGGTTGGAGATAATGATATGCAAAACTTTT
TAGTTGATATTTATTGCTTTTTTTTATTTTTTGTTACAGTTGCTAGATGA
AAAAACCCTAAGAGACCTTATTTAGTTGTAATTTTTTTAACTGTTCTGCT
ACACATTGTTTTTAGAGATATATAAAAAGAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010773XLOC_010773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019192-exon-sc0000320-1575043694:337793..337836TCONS_00019192-exon-sc0000320-1575043694:337793..337836Clytia hemisphaericaexon
TCONS_00019192-exon-sc0000320-1575043694:337252..337624TCONS_00019192-exon-sc0000320-1575043694:337252..337624Clytia hemisphaericaexon
TCONS_00019192-exon-sc0000320-1510915933:337793..337836TCONS_00019192-exon-sc0000320-1510915933:337793..337836Clytia hemisphaericaexon
TCONS_00019192-exon-sc0000320-1510915933:337252..337624TCONS_00019192-exon-sc0000320-1510915933:337252..337624Clytia hemisphaericaexon
TCONS_00019192-exon-sc0000320-1491911889:337793..337836TCONS_00019192-exon-sc0000320-1491911889:337793..337836Clytia hemisphaericaexon
TCONS_00019192-exon-sc0000320-1491911889:337252..337624TCONS_00019192-exon-sc0000320-1491911889:337252..337624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000320supercontigsc0000320:337252..337836 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.519	101.893	188.483	195.735	18.7332	10.6433	17.8778	20.7274	13.8783	9.93104	20.7626	13.7713	15.3046	11.6517	17.8393	21.9037	51.4875	59.9133	16.4356	21.431	93.2288	104.465	107.966	96.2638	13.8546	19.1236	29.7682	30.5365	44.6132	53.991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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