|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019188 ID=TCONS_00019188|Name=TCONS_00019188|organism=Clytia hemisphaerica|type=transcript|length=1450bp
CCCTGATGTAACTGGGGAGCTTTCAGAAATTTGTGCCTCTTACAACTGTG
ATCTTCCTGACAGAAAGTCTTTAATCCAAGCAAGAATTTTTCCGTTGACT
CTTTAATGTTAAAGTTTTATTAGTAATGTAATAACCATTGTGTTTCAATT
TCAGTAAATATAGGACCAGTTTGTGAAATTTTGTGTGATTATACTTTATC
CGTTTTTAAGGAAAGGAAAGTTCACTTCCTTGTTAAAAAGCAATGTCCTC
TGAAACCAAAGAAAGTTTATTTGATGTGGGAAATGGTATAAAATTATGGT
ATAGAACCTGGGGAAACTCTACTGGCATTCCAGTATTATTTGTTCATGGT
GGTCCTGGTAATTGTGTAGCCGATTATGATGGTATAAACGAAAAGTTCTT
TAACAAAGAGcaatattttgttgttgagattGATCAAAGAGGTACAGGAA
ATTCTCTGCCAAGTGTTAGAGATGGTCACAAAAATATGCCAATgtataaa
gatatttcaatcaCTCAAATGGCAGCTGACTTTGAAAAAATCAGACAAGA
ACTAGGGATATCTCAGTGGTTGGTATTTGGTGGTTCTTGGGGAAGTACAT
TGGGATTGTATTATGCAGAAAACTATCCATCAAAATGTCTGGGCCTTATC
ATCCGCGGAATCTTTTTGAACACAAAGGATGAGTTTGATGCTGTGTATTC
GCAAAAACCTTTTGAAGCAGATGCAAAACGTTTGGCAGAGTTCAATACAT
TCTTTGAGCTAGCTTCAAATGAAGCAAAGAACTCACAAGAGCAAACCCTT
GACCCTAATGATTCAGAAAGAATGATAAGATTGTATgaaaaaatgattct
aagaggCGATAGAGATGCAATCTGGagattttatgtttttgaaaataatc
ttgTGGAAGAAGATGAATCAAAATTATTGTACCCTTTAAAGgTTTCGGAA
GGTGAATTTCCAACAGCTCTTTCAGTATCATTTTTCGAAGCTCGTTTATT
TTTGAGGGGTACTTTTGAGCATCCCTTAACTTTGATGGAAGAtgtcaaga
aattaaaagagggTACCACAGGTCCTGTCAAAACATGGGTTGTTCAAGGG
ACAGGTGATGAAGTTTGCCCTGATCGATTTGCAAGGGATCTGGTAGATCA
ACTAAAGAAAGAATCTATTCCTACCACATCACATTTCGTAGATGCTGGAC
ATAAAGCAAGTTCAGATGGTGTTTTCAAAGCCCTTCAAGATTGTATTAAA
GATTTTAATGAATATTACACAAAGTAGATTTGAATATTAAGTTTAAGGCA
TTGTTTTACTTTTAAAGATTCGAGCTTTAAATTTCCCTGTCTtgaagttt
ttagtttttattgaatatttatacAGGATTACGCAAACAGTTACAAGTAT
CTGATATTACCTTTGGTCctgttataaatctaaaataataaataaattat Run BLAST on NCBI transcript from alignment at sc0000320:290582..292732- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019188 ID=TCONS_00019188|Name=TCONS_00019188|organism=Clytia hemisphaerica|type=transcript|length=2151bp|location=Sequence derived from alignment at sc0000320:290582..292732- (Clytia hemisphaerica)
CCCTGATGTAACTGGGGAGCTTTCAGAAATTTGTGCCTCTTACAACTGTG
ATCTTCCTGACAGAAAGTCTTTAATCCAAGCAAGAATTTTTCCGTTGACT
CTTTAATGTTAAAGTTTTATTAGTAATGTAATAACCATTGTGTTTCAATT
TCAGTAAATATAGGACCAGTTTGTGAAATTTTGTGTGATTATACTTTATC
CGTTTTTAAGGAAAGGAAAGTTCACTTCCTTGTTAAAAAGCAATGTCCTC
TGAAACCAAAGAAAGTTTATTTGATGTGGGAAATGGTATAAAATTATGGT
ATAGAACCTGGGGAAACTCTACTGGCATTCCAGTATTATTTGTTCATGGT
GGTCCTGGTAATTGTGTAGCCGATTATGATGGTATAAACGAAAAGTTCTT
TAACAAAGAGCAATATTTTGTTGTTGAGATTGATCAAAGAGGTACAGGAA
ATTCTCTGCCAAGTGTTAGAGATGGTCACAAAAATATGCCAATGTATAAA
GATATTTCAATCACTCAAATGGCAGCTGACTTTGAAAAAATCAGACAAGA
ACTAGGTAAGACTAGACTCTTTTTCGAATTTCCGGTAAAAAGCTAATGTA
TGGCTGTACCAGGTGCACCACAAAAAAGTTTTTTCCTTTCAAGAAAACTT
TCTTGTGTTCTATGACTTTTGACAAACTGAAAAATAAACTTAAATCTTGT
GGGTCATTTATCAAATTTGGTTCTTTGAATCAAAAGATAGCAAGACATGT
AATGAATTTATCTCAAACCTATACTTGATGTATTTTCATGAAATTTAACA
TATTATTTTCTCCATTTTCTGGCCACAAGTTTTTTTGATCAAATTGAAAT
TCAAAGGTAATTTTTACAGTTAATTATCATTTTTAATCAATGGAACAAAG
AAATTGTTGTAACCTTGAAGAAGTTTTTAAGGTTCAATTTCAATATGTCG
ATTTTTAATGTTCTTAAGTACTAGTAAAGTTTTTAATTCTTTTAAACATT
TGATCTAACAAATCAAATTTATTATTCTATCCATGAAAATCTAAGTTTAT
CTTTCCTCTTTCCAATACAAAGAAATTTACTCTTTCAGAGTTTAGTGAAT
CAAGTCAATTTTGCTGAATTTTTTAATTCTAGGGATATCTCAGTGGTTGG
TATTTGGTGGTTCTTGGGGAAGTACATTGGGATTGTATTATGCAGAAAAC
TATCCATCAAAATGTCTGGGCCTTATCATCCGCGGAATCTTTTTGAACAC
AAAGGATGAGTTTGATGCTGTGTATTCGCAAAAACCTTTTGAAGCAGATG
CAAAACGTTTGGCAGAGTTCAATACATTCTTTGAGCTAGCTTCAAATGAA
GCAAAGAACTCACAAGAGCAAACCCTTGACCCTAATGATTCAGAAAGAAT
GATAAGATTGTATGAAAAAATGATTCTAAGAGGCGATAGAGATGCAATCT
GGAGATTTTATGTTTTTGAAAATAATCTTGTGGAAGAAGATGAATCAAAA
TTATTGTACCCTTTAAAGGTTTGTCTTCCCATTGTTTTGCAGGTGTACTG
ATATCATTTTCTGAAAGAAGAAGACAATAAGTTTATGAAATGGACTTCAT
TTCCAAAGGATACCCTATTATTCTTTTTCTTTCTTTTGTTAGGTTTCGGA
AGGTGAATTTCCAACAGCTCTTTCAGTATCATTTTTCGAAGCTCGTTTAT
TTTTGAGGGGTACTTTTGAGCATCCCTTAACTTTGATGGAAGATGTCAAG
AAATTAAAAGAGGGTACCACAGGTCCTGTCAAAACATGGGTTGTTCAAGG
GACAGGTGATGAAGTTTGCCCTGATCGATTTGCAAGGGATCTGGTAGATC
AACTAAAGAAAGAATCTATTCCTACCACATCACATTTCGTAGATGCTGGA
CATAAAGCAAGTTCAGATGGTGTTTTCAAAGCCCTTCAAGATTGTATTAA
AGATTTTAATGAATATTACACAAAGTAGATTTGAATATTAAGTTTAAGGC
ATTGTTTTACTTTTAAAGATTCGAGCTTTAAATTTCCCTGTCTTGAAGTT
TTTAGTTTTTATTGAATATTTATACAGGATTACGCAAACAGTTACAAGTA
TCTGATATTACCTTTGGTCCTGTTATAAATCTAAAATAATAAATAAATTA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019188-exon-sc0000320-1575043694:292178..292732 | TCONS_00019188-exon-sc0000320-1575043694:292178..292732 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1575043694:291215..291600 | TCONS_00019188-exon-sc0000320-1575043694:291215..291600 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1575043694:290582..291090 | TCONS_00019188-exon-sc0000320-1575043694:290582..291090 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1510915933:292178..292732 | TCONS_00019188-exon-sc0000320-1510915933:292178..292732 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1510915933:291215..291600 | TCONS_00019188-exon-sc0000320-1510915933:291215..291600 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1510915933:290582..291090 | TCONS_00019188-exon-sc0000320-1510915933:290582..291090 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1491911889:292178..292732 | TCONS_00019188-exon-sc0000320-1491911889:292178..292732 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1491911889:291215..291600 | TCONS_00019188-exon-sc0000320-1491911889:291215..291600 | Clytia hemisphaerica | exon |
| TCONS_00019188-exon-sc0000320-1491911889:290582..291090 | TCONS_00019188-exon-sc0000320-1491911889:290582..291090 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:290582..292732 - |
Blast
The following BLAST results are available for this feature:
|
