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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019180 ID=TCONS_00019180|Name=TCONS_00019180|organism=Clytia hemisphaerica|type=transcript|length=1310bp
TCCAGgcataaataaaacaaaaatataataataaaaaaatagagaaaaat
agcATCAAATGACAGTGCAAAGATGTTGACCAGGAGATTACTCATCCAAG
CAAGTCAATACACCACATGCAGAACAATCGCCTCCACCACCAGATGTCCG
AAACAATTATTGTCAACTCGATGTAGCCTTGCTGTTCATTTAACTCAAAA
TCTAACGCAAAGAACTTTTGGACGCAGTTTGTTTACGGCGGCTCAAAGTG
GTTTTAAAGCACCACTATCGAACAGTTCACCATTGGTGCAAAATGTGTGG
CGTCTATCACCCTTGGTTACGATTTCTCAGCATCAAAGCAAACGAACAAT
TACCGTTGTTAGTCGTTTAGGGAAACGTAAAACATGTAAAAGCGTATTGA
AACGTTTTCGGCGAGTCAAAGGAGGCTATTTGAAACGATGGCGCTCAGGT
ATGGTGAAAAAACAACGGAAGAAGTCCAGTTGGCGGAAATTCCGGTTACG
AGGTAGCATACTCGTTAAAAGACCATCACAATTAAGAACACTTAACAAAA
TGATGTATAAATATTAATTCGTAATTTAGCTAATGATGAgtgaaaagttg
ttttttacgCTTGTTGTATCCAATTTACGGTGAAAACAGGATATGTTGTT
TTgaacaaaatataattttgataaaaaacaatAGTATTGGTTGCCATTCC
CTGATTGTGCTACCACTGGCGCCGTAAAACACTGTGCTTGTAATTGGGTA
AATAGCTCCTAAACAATTCATTTAACCACACCTACTACTAAGTTTCATCT
CGTGGAGCAGGGATTAGGGGCCGGGCTtccctttttgttttgttttagac
CATGAAGATGGAGAGTACTAAACTGGAACGACCTTACAGGCTATTGTATT
AGATTTGAATTTCCGTAGCATGGCCTGTTTCCGAATtaagattttgataa
aaaaagagcTTGCTTGTCCGAATACGAAGGatttaatattttgtttttgt
cttttcaatttaagaactttttacaattttcattacAGCCTTTCATAACT
TGGAAAAGCCTAAAATATGTCTCCTACCAGAGGAGTTAAATTATATATTA
TTCTTTAAACTCGTTATCATCCAtcaataattttgttttctcaaaaatat
ttacaaatttttaaaaataattatctaCTCCAATATTCCTAGACCCTTTT
AAAAATCTCGCTGTGTAGCTGCCGACGATGAAATTGGATTAGCGAAATGT
CTTTAAGTTCTTTAGTAAAGATTTCCTAATGGAAAGTAAAATCTCGCTGG
GACTTTAAAA Run BLAST on NCBI protein sequence of TCONS_00019180-protein >TCONS_00019180-protein ID=TCONS_00019180-protein|Name=TCONS_00019180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MLTRRLLIQASQYTTCRTIASTTRCPKQLLSTRCSLAVHLTQNLTQRTFG
RSLFTAAQSGFKAPLSNSSPLVQNVWRLSPLVTISQHQSKRTITVVSRLG
KRKTCKSVLKRFRRVKGGYLKRWRSGMVKKQRKKSSWRKFRLRGSILVKR
PSQLRTLNKMMYKY Run BLAST on NCBI transcript from alignment at sc0000320:165335..167076- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019180 ID=TCONS_00019180|Name=TCONS_00019180|organism=Clytia hemisphaerica|type=transcript|length=1742bp|location=Sequence derived from alignment at sc0000320:165335..167076- (Clytia hemisphaerica)
TCCAGGCATAAATAAAACAAAAATATAATAATAAAAAAATAGAGAAAAAT
AGCATCAAATGACAGTGCAAAGATGTTGACCAGGAGATTACTCATCCAAG
CAAGTCAATACACCACATGCAGAACAATCGCCTCCACCACCAGATGTCGT
AAGCTTGTTTTTTTCAACTTATGCTTTCTTTTTCTTGTTGACTTTGCTTT
AATTCTTTTTATACTTTGAAAATTTAGGAAATGAATTTTTTTATTTCTTA
AAGTTCAAACTCCAAACGAATTATCTCGGCTTTCGCAAAAGTGAAATAAA
TAATGTTTGGGTTCGTTGGAAAGCTATTTTTTATAAGATCTATCTCTTCA
GCATTTCTTGCTTACGGTTTCCGAAAGAAATCATGACTGAAATCATGAAA
TTTGACTTGGCGGTACAGAATGAGTTGAACGTATCAAGTCTAAGCATTAG
TGAAACACTAGAACTAGCTTTCTTAGCGTCGCGGGATTGCGAATTCGCCA
AATCATTCAGGGATATAAGTCTTTATTTTGTCTCCTTGCGAGGGTATAGC
AAGCTGAGAGATACCAATTTTACTTCATAGCGAAACAATTATTGTCAACT
CGATGTAGCCTTGCTGTTCATTTAACTCAAAATCTAACGCAAAGAACTTT
TGGACGCAGTTTGTTTACGGCGGCTCAAAGTGGTTTTAAAGCACCACTAT
CGAACAGTTCACCATTGGTGCAAAATGTGTGGCGTCTATCACCCTTGGTT
ACGATTTCTCAGCATCAAAGCAAACGAACAATTACCGTTGTTAGTCGTTT
AGGGAAACGTAAAACATGTAAAAGCGTATTGAAACGTTTTCGGCGAGTCA
AAGGAGGCTATTTGAAACGATGGCGCTCAGGTATGGTGAAAAAACAACGG
AAGAAGTCCAGTTGGCGGAAATTCCGGTTACGAGGTAGCATACTCGTTAA
AAGACCATCACAATTAAGAACACTTAACAAAATGATGTATAAATATTAAT
TCGTAATTTAGCTAATGATGAGTGAAAAGTTGTTTTTTACGCTTGTTGTA
TCCAATTTACGGTGAAAACAGGATATGTTGTTTTGAACAAAATATAATTT
TGATAAAAAACAATAGTATTGGTTGCCATTCCCTGATTGTGCTACCACTG
GCGCCGTAAAACACTGTGCTTGTAATTGGGTAAATAGCTCCTAAACAATT
CATTTAACCACACCTACTACTAAGTTTCATCTCGTGGAGCAGGGATTAGG
GGCCGGGCTTCCCTTTTTGTTTTGTTTTAGACCATGAAGATGGAGAGTAC
TAAACTGGAACGACCTTACAGGCTATTGTATTAGATTTGAATTTCCGTAG
CATGGCCTGTTTCCGAATTAAGATTTTGATAAAAAAAGAGCTTGCTTGTC
CGAATACGAAGGATTTAATATTTTGTTTTTGTCTTTTCAATTTAAGAACT
TTTTACAATTTTCATTACAGCCTTTCATAACTTGGAAAAGCCTAAAATAT
GTCTCCTACCAGAGGAGTTAAATTATATATTATTCTTTAAACTCGTTATC
ATCCATCAATAATTTTGTTTTCTCAAAAATATTTACAAATTTTTAAAAAT
AATTATCTACTCCAATATTCCTAGACCCTTTTAAAAATCTCGCTGTGTAG
CTGCCGACGATGAAATTGGATTAGCGAAATGTCTTTAAGTTCTTTAGTAA
AGATTTCCTAATGGAAAGTAAAATCTCGCTGGGACTTTAAAA Coding sequence (CDS) from alignment at sc0000320:165335..167076- >TCONS_00019180 ID=TCONS_00019180|Name=TCONS_00019180|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000320:165335..167076- (Clytia hemisphaerica)
CGAAACAATTATTGTCAACTCGATGTAGCCTTGCTGTTCATTTAACTCAA
AATCTAACGCAAAGAACTTTTGGACGCAGTTTGTTTACGGCGGCTCAAAG
TGGTTTTAAAGCACCACTATCGAACAGTTCACCATTGGTGCAAAATGTGT
GGCGTCTATCACCCTTGGTTACGATTTCTCAGCATCAAAGCAAACGAACA
ATTACCGTTGTTAGTCGTTTAGGGAAACGTAAAACATGTAAAAGCGTATT
GAAACGTTTTCGGCGAGTCAAAGGAGGCTATTTGAAACGATGGCGCTCAG
GTATGGTGAAAAAACAACGGAAGAAGTCCAGTTGGCGGAAATTCCGGTTA
CGAGGTAGCATACTCGTTAAAAGACCATCACAATTAAGAACACTTAACAA
AATGATGTATAAATATTAAATGTTGACCAGGAGATTACTCATCCAAGCAA
GTCAATACACCACATGCAGAACAATCGCCTCCACCACCAGATGTCCGAAA
CAATTATTGTCAACTCGATGTAGCCTTGCTGTTCATTTAACTCAAAATCT
AACGCAAAGAACTTTTGGACGCAGTTTGTTTACGGCGGCTCAAAGTGGTT
TTAAAGCACCACTATCGAACAGTTCACCATTGGTGCAAAATGTGTGGCGT
CTATCACCCTTGGTTACGATTTCTCAGCATCAAAGCAAACGAACAATTAC
CGTTGTTAGTCGTTTAGGGAAACGTAAAACATGTAAAAGCGTATTGAAAC
GTTTTCGGCGAGTCAAAGGAGGCTATTTGAAACGATGGCGCTCAGGTATG
GTGAAAAAACAACGGAAGAAGTCCAGTTGGCGGAAATTCCGGTTACGAGG
TAGCATACTCGTTAAAAGACCATCACAATTAAGAACACTTAACAAAATGA
TGTATAAATATTAAATGTTGACCAGGAGATTACTCATCCAAGCAAGTCAA
TACACCACATGCAGAACAATCGCCTCCACCACCAGATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019180-exon-sc0000320-1575043694:166929..167076 | TCONS_00019180-exon-sc0000320-1575043694:166929..167076 | Clytia hemisphaerica | exon |
| TCONS_00019180-exon-sc0000320-1575043694:165335..166496 | TCONS_00019180-exon-sc0000320-1575043694:165335..166496 | Clytia hemisphaerica | exon |
| TCONS_00019180-exon-sc0000320-1510915933:166929..167076 | TCONS_00019180-exon-sc0000320-1510915933:166929..167076 | Clytia hemisphaerica | exon |
| TCONS_00019180-exon-sc0000320-1510915933:165335..166496 | TCONS_00019180-exon-sc0000320-1510915933:165335..166496 | Clytia hemisphaerica | exon |
| TCONS_00019180-exon-sc0000320-1491911889:166929..167076 | TCONS_00019180-exon-sc0000320-1491911889:166929..167076 | Clytia hemisphaerica | exon |
| TCONS_00019180-exon-sc0000320-1491911889:165335..166496 | TCONS_00019180-exon-sc0000320-1491911889:165335..166496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:165335..167076 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021137 | Ribosomal_L35 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
The following BLAST results are available for this feature:
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