TCONS_00019171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019171
Unique NameTCONS_00019171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019171 ID=TCONS_00019171|Name=TCONS_00019171|organism=Clytia hemisphaerica|type=transcript|length=317bp
ACGGCCACAGTCTGCGCAACAAATTAATCTTTCCGCTGATCCTTGTCTGT
TCGCATTCACGTTGCCCAGACAGGTGTCACAGAAATGACTTGGTGGCGTT
CCTTTCGCCCGTTTGGCTCCTGCAATATGATTGGGAGGTGGTGCTTCGAC
CGGTTGAACGGTCAGGGCGGGCATAGGCGGAGGGATCGGATCGATGGGTG
GTGGAAGGGATGAGAGTGGGGCAGGTGGAGGGGCGGGCTGCTGCTCTTCT
AAATCGTGATTGTGATGTTCATAGTGATACCGCAAACCTTGCGAGTTCTT
GTAACGCTTTCCGCAAA
Run BLAST on NCBI

transcript from alignment at sc0000320:23318..23705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019171 ID=TCONS_00019171|Name=TCONS_00019171|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at sc0000320:23318..23705- (Clytia hemisphaerica)
ACGGCCACAGTCTGCGCAACAAATTAATCTTTCCGCTGATCCTTGTCTGT
TCGCATTCACGTTGCCCAGACAGGNCCACAGTCTGCGCAACAAATTAATC
TTTCCGCAGATCCTTGTCTGTTCGCATTCACGTTGCCCAGACAGGTGTCA
CAGAAATGACTTGGTGGCGTTCCTTTCGCCCGTTTGGCTCCTGCAATATG
ATTGGGAGGTGGTGCTTCGACCGGTTGAACGGTCAGGGCGGGCATAGGCG
GAGGGATCGGATCGATGGGTGGTGGAAGGGATGAGAGTGGGGCAGGTGGA
GGGGCGGGCTGCTGCTCTTCTAAATCGTGATTGTGATGTTCATAGTGATA
CCGCAAACCTTGCGAGTTCTTGTAACGCTTTCCGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010759XLOC_010759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019171-exon-sc0000320-1575043694:23633..23705TCONS_00019171-exon-sc0000320-1575043694:23633..23705Clytia hemisphaericaexon
TCONS_00019171-exon-sc0000320-1575043694:23318..23561TCONS_00019171-exon-sc0000320-1575043694:23318..23561Clytia hemisphaericaexon
TCONS_00019171-exon-sc0000320-1510915933:23633..23705TCONS_00019171-exon-sc0000320-1510915933:23633..23705Clytia hemisphaericaexon
TCONS_00019171-exon-sc0000320-1510915933:23318..23561TCONS_00019171-exon-sc0000320-1510915933:23318..23561Clytia hemisphaericaexon
TCONS_00019171-exon-sc0000320-1491911889:23633..23705TCONS_00019171-exon-sc0000320-1491911889:23633..23705Clytia hemisphaericaexon
TCONS_00019171-exon-sc0000320-1491911889:23318..23561TCONS_00019171-exon-sc0000320-1491911889:23318..23561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000320supercontigsc0000320:23318..23705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.4141	14.2528	21.1382	13.6785	22.9599	12.1271	6.41612	11.9088	0	0.716575	0	0	4.27187	5.89424	3.29915	7.58846	4.0752	0.997302	0	1.86483	4.58072	6.46433	8.90377	13.8572	8.03082	1.9616	2.38098	7.36895	11.1873	5.75374
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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