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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019165 ID=TCONS_00019165|Name=TCONS_00019165|organism=Clytia hemisphaerica|type=transcript|length=2330bp
ttcttttatttatttattcgaTGTTGAAATATATACATGGTATATacaaa
gttgaaaaaaacaatCTATTTATCAGCAGATATAAAGTAAGCTAGCATTA
CACTTACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATAACTTA
GTTTACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGGATTTA
TTCAGAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACGAGGCT
TCAGTTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAAAGCAT
ACTTTTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGAGTGGA
TTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAGGAGAA
AACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACACAGAC
ACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGCCGTGC
AAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTACATCA
ACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTCCAATA
TCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgcatgttg
tgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacgatttca
aaaacattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTCTAGAG
atTACGGCAAACTACCCTCACTAACTTTCATCGGGTACGCACGAAAATAC
GGCGGTCATTCTCCACACGGGAAGTTGCCGTATCCTACTTCGACACCGGG
TAGCAACAATAACGGAAACAACCCTTCAAGTAACGGATTCCGCCGACGAC
ACCGGACCATCTTTTCTGACGAACAATTGGAGTTGATGGAGAGAATGTTC
GATCGGACACATTATCCAGATGTGATGGTGAGAGAAGAAATCGCAAGAAT
GATCAACTTGACCGAAGAAAAAGTTGAGGTTTGGTTCAAAAATCGTAGAG
CAAGAtggagaaaacaaaagaaagatacGCACAATTCATCACCGAAAGGA
CTTCGAGGAGGGATTAGCTCTGCGTTAAACCACGGAAAGTTGACGATGAA
TAGTAGCTACGTCATTGATAGTGAAGGTTCAATATCTCCTTGTTCACCCA
TACGAGAAATCGAAAAGGCCTTAAGCAAGACTCCTCATTGATTGACAAGC
GAAAAGAAGCTTTGAGGATGCGGAGATTTTGAGGAGGAAGAATGGTGATC
GGCGACAGGTCAGGTCAGACCAATTATGACTTTCTTCCGATTGAATAATG
GGACCAATGTCTTTGCTGGATTCGCCTGGTACAAAGGACGAAAAGCGAAA
ACCAAAAGCCGAGAAGGCGGCTCCTAACGATCACACTCATTTGCAAACAG
TCGTGCAAAATGGTGGCCTGAGACACCCATACGGGGAGGATgctcaaaaa
tcttttgaaaacaatgaaTATTCGGAAGCAAATTAATGAGAAGATTCCAG
CAGTGACAACAAGAAGAATCCCAAAAGGAAACAGAcaagtcaaaatcaaa
tttgagtGGGGAttaatctattttttttaaatggtgtATTCTTTCAATGA
TAAGAATTATAATTTCTCATTattttaaactagacaaaaagTCTCCCTCG
TCGATTAGACCCATGTTGAGTTATATTTTGGAAATTCTCTTCTCTATTAT
GTGTTCTTGGAGTAGGAAGCTTTTGCAAAAGTAGCTCCAAAGTTATCTTG
GAAAAGAATCTCTTTCAGATTACAATAATATGTGATTAGTTTTGAGCTGT
GTTTGCACAGTATGATTCCACTCAGTGTTTTAAAGTCCCAGCGAGATTTT
ACTTTCCATTAGGAAATCTTTACTAAAGAACTTAAAGACATTTCGCTAAT
CCAATTTCATCGTCGGCAGCTACACAGCGAGATTTTTAAAAGGGTCTAGG
AATATTGGAGtagataattatttttaaaaatttgtaaatatttttgagaa
aacaaaattattgaTGGATGATAACGAGTTTAAAGAATAATATATAATTT
AACTCCTCTGGTAGGAGACATATTTTAGGCTTTTCCAAGTTATGAAAGGC
Tgtaatgaaaattgtaaaaagttcttaaattgaaaagacaaaaacaaaat
attaaatCCTTCGTATTCGGACAAGCAAgctctttttttatcaaaatctt
aATTCGGAAACAGGCCATGCTACGGAAATTCAAATCTAATACAATAGCCT
GTAAGGTCGTTCCAGTTTAGTACTCTCCAT Run BLAST on NCBI transcript from alignment at sc0000320:161337..165787+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019165 ID=TCONS_00019165|Name=TCONS_00019165|organism=Clytia hemisphaerica|type=transcript|length=4451bp|location=Sequence derived from alignment at sc0000320:161337..165787+ (Clytia hemisphaerica)
ttcttttatttatttattcgaTGTTGAAATATATACATGGTATATacaaa
gttgaaaaaaacaatCTATTTATCAGCAGATATAAAGTAAGCTAGCATTA
CACTTACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATAACTTA
GTTTACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGGATTTA
TTCAGAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACGAGGCT
TCAGTTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAAAGCAT
ACTTTTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGAGTGGA
TTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAGGAGAA
AACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACACAGAC
ACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGCCGTGC
AAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTACATCA
ACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTCCAATA
TCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgcatgttg
tgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacgatttca
aaaacattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTCTAGAG
GTAATaatgaattgatttttttgaaggaTTGAGAGAGCGACAGAGTCAGG
CACGTGATTTAGAAGAAGTGAAGTGGCTTACAGATAGCACACAACAGTAA
GGTGAATAAAATTATAATTNTGCAGATATAAAGTAAGCTAGCATTACACT
TACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATAACTTAGTTT
ACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGGATTTATTCA
GAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACGAGGCTTCAG
TTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAAAGCATACTT
TTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGAGTGGATTTT
TGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAGGAGAAAACG
GATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACACAGACACAG
TCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGCCGTGCAAAT
CACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTACATCAACAT
CATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTCCAATATCTG
TGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgcatgttgtgtt
aTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacgatttcaaaaa
cattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTCTAGAGGTAA
TaatgaattgatttttttgaaggaTTGAGAGAGCGACAGAGTCAGGCACG
TGATTTAGAAGAAGTGAAGTGGCTTACAGATAGCACACAACAGTAAGGTG
AATAAAAttataattcattttttttctagatTACGGCAAACTACCCTCAC
TAACTTTCATCGGGTACGCACGAAAATACGGCGGTCATTCTCCACACGGG
AAGTTGCCGTATCCTACTTCGACACCGGGTAGCAACAATAACGGAAACAA
CCCTTCAAGTAACGGATTCCGCCGACGACACCGGACCATCTTTTCTGACG
AACAATTGGAGTTGATGGAGAGAATGTTCGATCGGACACATTATCCAGAT
GTGATGGTGAGAGAAGAAATCGCAAGAATGATCAACTTGACCGAAGAAAA
AGTTGAGGTAAGAACCTAACACTCTCTTGCGAAAAAAATTACGTCTATCC
ATGCCTGAAACGAACTCAATAGAAAATAATcttacaaattcaaaaaaagt
taacaaaGTGCTAGTCTGTAGACGAAAACAGTTTCATATTATGGCTCAGc
taaaatgtctttaaaaagtTAGCTGTTTGGAAGGCACTGGCTAACGAAGT
CCTTATTCTTTCCATAGGAATATTTCGCTTTTGCGCAAATTTATCATATT
AACGAAAAAGGATGATCTGAGTAAAGCGCAAATGCAAAAACCTCGATCGA
TCTAGTCCGCTTATTAGTCTCAACATGTGCTTGTCATAAATCAAATAATT
AGAAAAGTAAAAGAGATCTATCAAGCGCAAATTTGAAATAGGATCAACCC
ATAAAACAGTGTCGGAATTTTGAGAGGCTTTTAATTTCATAAACAGGGGA
AGCTTGAAGAATTATCCCTTCTTTTAAAAATGCTCTTATTATCACCATCT
TGTTGTTTTAGCTTAATCAATATAACCCGACAAAACAAACTAACACTTCC
CGCAAAACCCTTCTTCTTTTGAGGACCAAAATGGgaccaaaaccaaaaaa
taattGAAGGCATTTTGTATGAaaagaattcttttcaaaagaagctCGTG
CCGTAAATTatcaaaagaatcaaaaagctaaaattgaaaaggttacaatt
atcaaaaagaataaaagaagaGGAAACTTTGAGGCTTAAgccttattttt
cttttgagctTTCCCATTTCTAATCTAATCAAGGGTATTCTACACTCGAG
AAAAAAGGGTGATTCTCATTGAGGCAAAATTCAATAGATAAAAAGATCTA
AAAGGTTTAAATACTTAaaagcaacaacaacaaaaaataaatagaatgaA
CCTGTATAAAAGATTGGGTCCAGCTTTTTATCCTGAAATGGGGCGGTGCA
GGAAAAGAAAAGGGTTAAAACAAAACCGCACCTATGCTATAtcattttac
aaaaatgaaattcaaaatacATGACGAACATCAAAGCCCTGACCAAGCCC
TGACCGTTACACTCCTAATGCAAAATCatttaataacttttttcccaaaa
taGCACTGCTCATGCTAAAAGGTTCATCACTGTGTGGTATAATCAAGGCC
TTAACTTACGCAGATTCAATAAATAGGCTATTCTTCTTTGACTTCACAGG
TTTGGTTCAAAAATCGTAGAGCAAGAtggagaaaacaaaagaaagatacG
CACAATTCATCACCGAAAGGACTTCGAGGAGGGATTAGCTCTGCGTTAAA
CCACGGAAAGTTGACGATGAATAGTAGCTACGTCATTGATAGTGAAGGTT
CAATATCTCCTTGTTCACCCATACGAGAAATCGAAAAGGCCTTAAGCAAG
ACTCCTCATTGATTGACAAGCGAAAAGAAGCTTTGAGGATGCGGAGATTT
TGAGGAGGAAGAATGGTGATCGGCGACAGGTCAGGTCAGACCAATTATGA
CTTTCTTCCGATTGAATAATGGGACCAATGTCTTTGCTGGATTCGCCTGG
TACAAAGGACGAAAAGCGAAAACCAAAAGCCGAGAAGGCGGCTCCTAACG
ATCACACTCATTTGCAAACAGTCGTGCAAAATGGTGGCCTGAGACACCCA
TACGGGGAGGATgctcaaaaatcttttgaaaacaatgaaTATTCGGAAGC
AAATTAATGAGAAGATTCCAGCAGTGACAACAAGAAGAATCCCAAAAGGA
AACAGAcaagtcaaaatcaaatttgagtGGGGAttaatctatttttttta
aatggtgtATTCTTTCAATGATAAGAATTATAATTTCTCATTattttaaa
ctagacaaaaagTCTCCCTCGTCGATTAGACCCATGTTGAGTTATATTTT
GGAAATTCTCTTCTCTATTATGTGTTCTTGGAGTAGGAAGCTTTTGCAAA
AGTAGCTCCAAAGTTATCTTGGAAAAGAATCTCTTTCAGATTACAATAAT
ATGTGATTAGTTTTGAGCTGTGTTTGCACAGTATGATTCCACTCAGTGTT
TTAAAGTCCCAGCGAGATTTTACTTTCCATTAGGAAATCTTTACTAAAGA
ACTTAAAGACATTTCGCTAATCCAATTTCATCGTCGGCAGCTACACAGCG
AGATTTTTAAAAGGGTCTAGGAATATTGGAGtagataattatttttaaaa
atttgtaaatatttttgagaaaacaaaattattgaTGGATGATAACGAGT
TTAAAGAATAATATATAATTTAACTCCTCTGGTAGGAGACATATTTTAGG
CTTTTCCAAGTTATGAAAGGCTgtaatgaaaattgtaaaaagttcttaaa
ttgaaaagacaaaaacaaaatattaaatCCTTCGTATTCGGACAAGCAAg
ctctttttttatcaaaatcttaATTCGGAAACAGGCCATGCTACGGAAAT
TCAAATCTAATACAATAGCCTGTAAGGTCGTTCCAGTTTAGTACTCTCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019165-exon-sc0000320-1491911889:161337..162086 | TCONS_00019165-exon-sc0000320-1491911889:161337..162086 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1510915933:161337..162086 | TCONS_00019165-exon-sc0000320-1510915933:161337..162086 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1575043694:161337..162086 | TCONS_00019165-exon-sc0000320-1575043694:161337..162086 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1491911889:163016..163293 | TCONS_00019165-exon-sc0000320-1491911889:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1510915933:163016..163293 | TCONS_00019165-exon-sc0000320-1510915933:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1575043694:163016..163293 | TCONS_00019165-exon-sc0000320-1575043694:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1491911889:164486..165787 | TCONS_00019165-exon-sc0000320-1491911889:164486..165787 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1510915933:164486..165787 | TCONS_00019165-exon-sc0000320-1510915933:164486..165787 | Clytia hemisphaerica | exon |
| TCONS_00019165-exon-sc0000320-1575043694:164486..165787 | TCONS_00019165-exon-sc0000320-1575043694:164486..165787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:161337..165787 + |
Blast
BLAST of TCONS_00019165 vs. Swiss-Prot (Human)
Match: GSC (Homeobox protein goosecoid OS=Homo sapiens GN=GSC PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 8.820e-22 Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 3
Query: 891 RRRHRTIFSDEQLELMERMFDRTHYPDVMVREEIARMINLTEEKVEVWFKNRRARWRKQKK 1073
+RRHRTIF+DEQLE +E +F T YPDV RE++AR ++L EEKVEVWFKNRRA+WR+QK+
Sbjct: 160 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 220
The following BLAST results are available for this feature:
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