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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019161 ID=TCONS_00019161|Name=TCONS_00019161|organism=Clytia hemisphaerica|type=transcript|length=1531bp
ttttctttgataaTTAATTTATGACCCCAAGCTTTCTTCTTTCCTCTTCt
tttggttttaaattttcttttctaaatAATACTTTCCATTGTGTATATTT
TTTAGCTGCAATTTTCCACCTCCTTTCTCTTCTTCTATATAAACTGGTAT
CAGGCCTCTTGCTCGTTACTTAAAACTTTCGACCACTGAGAGAACTTTGT
AAAAAGGTGGTAAATtaactttgaaaaaaaggagaaatttCTTACACGAT
GGGTATGAATGGATTGTTGCTGGTCCTTGCAACCGTACAACTGCTCGTTT
TTTCCGTCCACAGTTATTACATCATCAAAGAAGAAACGAGATCTGATAAT
GATTTTGCTGACGATGCAGAAACCGTCCGTGATGGCATGTCATTCGTCAC
TCGACCACGCTTTTCAAGTAACTTGGACAAAAAACGCACTGTCGATCTTT
CAAACGACTACCTTCAAATTCGTGACGAGATTAACGATGACCTGAATGAA
AAAGGATATGTCATCGTTCGTGATGTCACTGCAGACGGTAAGAACGAGGA
AAATGCGGAGCGTCGTCAAATGGATCTTGTGGGTGGACATCGTGGCGTCA
AATGGGGATTCTTCAGCCCTCAAAAGAAACGTGATTCTGCTCAACCAGTC
GACTCACGCGCACGTTTTGGTGGACATGTTCGCGAAGCAGACTCTCCAAA
TACCGCCCATCAACGTCTCGTATTTTCTCGTATCGGAAAACGATCTCATT
CTATCCCTTATGCTGGTATTCATCGACCGCGGTTCAATTCAATGACTAAT
AGTGAGAAACGCGAAAACAAAAACTACGAAATTGTGGCCGTGATCAAAGA
AGAGGATTAAGCAGAAACATTTTCCGTACTCAAGTTGTGCACAAAGACTT
TAAAACAATATTCTTATTCCGATATTTAGTCCTGGACATCCCAACCGACA
CCCAGCATCTGGGGATTCGTGAACACGACATTTTAGTAGAGCTTTTGTAA
AAACGAAAAGTAGAAATATAAGGCTAGTTAGCTAGCTAGTAAAGCTAGTT
AGCTATTATTCTCTGTTTTAActtttcttggaagattgaaGTAATGTATT
TCGTATCATTTTTGGAAATATCTCATTCACCTCTGATTTTGTCGGGATTA
AGTTCTctaaataattttcttcttcatatcAAACTAGACCTTATTTTTAG
ACATCTTTTTTCGAAATACGCTCATGATACATATTTTATTGGATTTTGAA
ATTCATCCTAAATGAAAATACTCcctctgaaaaatttgataagaTTTGAT
ATATAAGATATATCTTCAtgaatcagaaattttcattgttGTTTGAAATA
AGACACAGTTGCTGTTCTCGCGATTTTCCCATGTCGATTCATTggtcttt
ttctaattttattttattttgaaaatagagATGAAATCTGAAAACAAATC
ATACATTCAAATAACAATTCTGATAAGCAGTTGTAAACGCGATGTAGGCG
TCAAATTACAGTTCCATTTTATCTTCAGGAA Run BLAST on NCBI transcript from alignment at sc0000320:32887..34561+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019161 ID=TCONS_00019161|Name=TCONS_00019161|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at sc0000320:32887..34561+ (Clytia hemisphaerica)
ttttctttgataaTTAATTTATGACCCCAAGCTTTCTTCTTTCCTCTTCt
tttggttttaaattttcttttctaaatAATACTTTCCATTGTGTATATTT
TTTAGCTGCAATTTTCCACCTCCTTTCTCTTCTTCTATATAAACTGGTAT
CAGGCCTCTTGCTCGTTACTTAAAACTTTCGACCACTGAGAGAACTTTGT
AAAAAGGTGGTAAATtaactttgaaaaaaaggagaaatttCTTACACGAT
GGGTAAGCGCTTTTGTCATTCATTTTCATATTTACTGCTTTGTatacttt
gtttattttatgcGCATCAGGTCTTCCTGAGGTTGAACCAGTCTGCTTGA
TAACTGTTTCGGTATATAATTTCAATCGATGATTATTTTCTCTCAGGTAT
GAATGGATTGTTGCTGGTCCTTGCAACCGTACAACTGCTCGTTTTTTCCG
TCCACAGTTATTACATCATCAAAGAAGAAACGAGATCTGATAATGATTTT
GCTGACGATGCAGAAACCGTCCGTGATGGCATGTCATTCGTCACTCGACC
ACGCTTTTCAAGTAACTTGGACAAAAAACGCACTGTCGATCTTTCAAACG
ACTACCTTCAAATTCGTGACGAGATTAACGATGACCTGAATGAAAAAGGA
TATGTCATCGTTCGTGATGTCACTGCAGACGGTAAGAACGAGGAAAATGC
GGAGCGTCGTCAAATGGATCTTGTGGGTGGACATCGTGGCGTCAAATGGG
GATTCTTCAGCCCTCAAAAGAAACGTGATTCTGCTCAACCAGTCGACTCA
CGCGCACGTTTTGGTGGACATGTTCGCGAAGCAGACTCTCCAAATACCGC
CCATCAACGTCTCGTATTTTCTCGTATCGGAAAACGATCTCATTCTATCC
CTTATGCTGGTATTCATCGACCGCGGTTCAATTCAATGACTAATAGTGAG
AAACGCGAAAACAAAAACTACGAAATTGTGGCCGTGATCAAAGAAGAGGA
TTAAGCAGAAACATTTTCCGTACTCAAGTTGTGCACAAAGACTTTAAAAC
AATATTCTTATTCCGATATTTAGTCCTGGACATCCCAACCGACACCCAGC
ATCTGGGGATTCGTGAACACGACATTTTAGTAGAGCTTTTGTAAAAACGA
AAAGTAGAAATATAAGGCTAGTTAGCTAGCTAGTAAAGCTAGTTAGCTAT
TATTCTCTGTTTTAActtttcttggaagattgaaGTAATGTATTTCGTAT
CATTTTTGGAAATATCTCATTCACCTCTGATTTTGTCGGGATTAAGTTCT
ctaaataattttcttcttcatatcAAACTAGACCTTATTTTTAGACATCT
TTTTTCGAAATACGCTCATGATACATATTTTATTGGATTTTGAAATTCAT
CCTAAATGAAAATACTCcctctgaaaaatttgataagaTTTGATATATAA
GATATATCTTCAtgaatcagaaattttcattgttGTTTGAAATAAGACAC
AGTTGCTGTTCTCGCGATTTTCCCATGTCGATTCATTggtctttttctaa
ttttattttattttgaaaatagagATGAAATCTGAAAACAAATCATACAT
TCAAATAACAATTCTGATAAGCAGTTGTAAACGCGATGTAGGCGTCAAAT
TACAGTTCCATTTTATCTTCAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019161-exon-sc0000320-1491911889:32887..33138 | TCONS_00019161-exon-sc0000320-1491911889:32887..33138 | Clytia hemisphaerica | exon |
| TCONS_00019161-exon-sc0000320-1510915933:32887..33138 | TCONS_00019161-exon-sc0000320-1510915933:32887..33138 | Clytia hemisphaerica | exon |
| TCONS_00019161-exon-sc0000320-1575043694:32887..33138 | TCONS_00019161-exon-sc0000320-1575043694:32887..33138 | Clytia hemisphaerica | exon |
| TCONS_00019161-exon-sc0000320-1491911889:33283..34561 | TCONS_00019161-exon-sc0000320-1491911889:33283..34561 | Clytia hemisphaerica | exon |
| TCONS_00019161-exon-sc0000320-1510915933:33283..34561 | TCONS_00019161-exon-sc0000320-1510915933:33283..34561 | Clytia hemisphaerica | exon |
| TCONS_00019161-exon-sc0000320-1575043694:33283..34561 | TCONS_00019161-exon-sc0000320-1575043694:33283..34561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:32887..34561 + |
Blast
The following BLAST results are available for this feature:
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