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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019150 ID=TCONS_00019150|Name=TCONS_00019150|organism=Clytia hemisphaerica|type=transcript|length=2465bp
GTTGCTGCAAGGCAAGTATTATTATTGTTTCTTGCTAGTTACACATCAAT
CAAGTTCGTGTTCATTTCACTTTTGCCTTTATCTTGTGTTGTTTTAGTTA
TTGATCAATCAACTCAGAGGCGAGCTCCTACACGCGGAGAACCATATACG
CCAGCTAACGGCGGAGCGCAATCATGAACGTAACCACAGGCAAATGTTGG
AGGGGAATATAGCAAATGGTTTCAGAGCCGACCAACACGTAAGTATAAGC
TACTGTCTGGATACATAATGCAAAGCAATGGCTTTTTACAAGACGATCGA
CTTCTTGGTCAATTTGGAAACTATATCTTTAATGATGGTTTGGTTTTATT
TAAGATAATCCCATTTACGAACTTGCACGTTCAATGTGCGGCAAGAGGCC
CGGGCAACCCTCATCAAATGATCTTCCGATTGGCAAATGGCTTCAGGGCA
GAAAATTATGTCTTTAGCATGAGCGAAACCACAGACaaatgcttgaaaat
aatatggCAAATGGCTTCAGAGCAGAAAATTATGTTAAAACGAAAGAAAT
CATATGCAGTTACTGGAAAACAGATTGGCAAATGGtttcaagaaagaaaa
ttattgtctgcttcaaacaaaagaaatcagGCAATTACTATCTGGATCGA
CTTTTTGGTCAATTTGGAAACTATCTTTAATGATGGTTTGGTTTTATTTC
AAAGCTATTTTCGTTCACCAATCTGCACGTACAATGTGCGGCCAGGCAGA
ATGGCAGAAAATTATTGTCTGCTTGAAACGAAAGAAATCGTAGGCAATCA
CTATCTGGATAATGCAAAGCAATGGCTTTTTACAACTTGTTTTCACTGGT
TTTCAATAGTGAAAAAACGTGACGATTATCGAGATGAAATGTGAACTGGA
CGCTTACGTTTAAAAGAAAGGTAACTTTTCGGGTTTTCAATCATTTCGAA
ATGAAATATGACATTGAATTTCGTAAAAATGACTAATTGAATTAGTTATG
ACTTGTGACTCGACTGCAGAAAAGACAAATTCATCCAAACTACATCACTC
TGAGTgatattgaaattttttcagCCATCGGTGGTAAGTATTTTCTGGTC
ATGGTGTTTTAACTTTTGGATCGTTTTTGGTTCTAAGTGCtctttgtgtt
ttattttatagttCCTTTTTAGACTCGTTTTTAAGTGGTAGTgcactttt
aatgaaaaattgcTTCACAAAGTTCATAGTTATCTTATTATAttccatat
attttttcaaatttacagcaAATTCAAAGTCTGCAGCGGCAATTAGATGA
AATGGCGCTGGAAAACCAAGATCTCGGCGATCAGTGCGAGATCAATCTCC
ACCTTTTAGAAGTGACCTTCCTTTTCTTCTCCTATTTTTTGATACTATGA
AGTCCAAGCTTCTTCGGCGACTGAAGCTCTAAGGGGGCAGGAGGGGGATG
GGTGAATCTACCATGCTTACAATTTTTTGATCCACAGGTGCTCTTTTCTT
GGAAATTTGTACAGATTTTAAAGATAGTACCAGAAGTTGCAGACATATCT
TTGCGGTCAATGGAAACTTGCttcaaaagcaagaaaaactctttataaaa
aaatcagccGCTTTGGAAAAATAAAGGGATAAGGTGATACTCTTTAAAAC
CTATAAGTTACGTAAATATGGCCAGTTTAATCAACATGAATATTATGCCG
GGAACAGACGCCTTAAAGTTcgatttaattatttttaacaaaaaaatctg
ATGGTAAACATGTTTTTAACTTGGGATTCTACTATGTTATAAAATCATCC
CGTCATCAAATTGAGTACACAGAAAAGAGAGTATTTTccagaaaagagaa
aattaattcaagtttCGTACCTCACAGCAAACATCAGACGTAAGATAAAC
AGTTCTTTAAAAGCCTATCGATTTCGGTTAACAGAGGAAGCATTATTAGA
ACATACACGTAAGCTTGCCATCAAACGTTTGAGGATTTAATTTCTTTCTG
CCCAACCAATCACCGGCACCAACCCAAGACGAGGCCGGTGAAAAAGAAGC
CGTTCTCGATCAACCTCCTCCGCCACCAGAAGCAGAAGAAGAAATGGAAG
ATCAACCGCAGGGCGATTAAGGTGAAGGAACAATGACATCTGCGATTTAt
acactttattttttttattatccaTCCCTCAAGAATAATAACcttttgaa
atagaaaatgatattttcaatGCGATACTTTGTTGACTTAAAAGATAATA
TTGTCACGTTGGATTTTCCTGAAACATTGAATTACTCTTTATAGGCACAC
GTATCCGAAAACTTAGCAATCAAAGCAATATTTGATTCATTCTTGCCCTT
CTGCCGTTTTGAAGCAAACGTGACgaagaaaaatgatataatgaaCGCTA
ATTTCGAATGCATTAATTAACCTTTTCGTTAAAAATTGAGTAGTTTCGCA
GGATTTTGAAAATTG Run BLAST on NCBI protein sequence of TCONS_00019150-protein >TCONS_00019150-protein ID=TCONS_00019150-protein|Name=TCONS_00019150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MQSNGFLQDDRLLGQFGNYIFNDGLVLFKIIPFTNLHVQCAARGPGNPHQ
MIFRLANGFRAENYVFSMSETTDKCLKIIWQMASEQKIMLKRKKSYAVTG
KQIGKWFQERKLLSASNKRNQAITIWIDFLVNLETIFNDGLVLFQSYFRS
PICTYNVRPGRMAENYCLLETKEIVGNHYLDNAKQWLFTTCFHWFSIVKK
RDDYRDEM Run BLAST on NCBI transcript from alignment at sc0000319:316739..319203 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019150 ID=TCONS_00019150|Name=TCONS_00019150|organism=Clytia hemisphaerica|type=transcript|length=2465bp|location=Sequence derived from alignment at sc0000319:316739..319203 (Clytia hemisphaerica)
CAATTTTCAAAATCCTGCGAAACTACTCAATTTTTAACGAAAAGGTTAAT
TAATGCATTCGAAATTAGCGttcattatatcatttttcttcGTCACGTTT
GCTTCAAAACGGCAGAAGGGCAAGAATGAATCAAATATTGCTTTGATTGC
TAAGTTTTCGGATACGTGTGCCTATAAAGAGTAATTCAATGTTTCAGGAA
AATCCAACGTGACAATATTATCTTTTAAGTCAACAAAGTATCGCattgaa
aatatcattttctatttcaaaagGTTATTATTCTTGAGGGAtggataata
aaaaaaataaagtgtaTAAATCGCAGATGTCATTGTTCCTTCACCTTAAT
CGCCCTGCGGTTGATCTTCCATTTCTTCTTCTGCTTCTGGTGGCGGAGGA
GGTTGATCGAGAACGGCTTCTTTTTCACCGGCCTCGTCTTGGGTTGGTGC
CGGTGATTGGTTGGGCAGAAAGAAATTAAATCCTCAAACGTTTGATGGCA
AGCTTACGTGTATGTTCTAATAATGCTTCCTCTGTTAACCGAAATCGATA
GGCTTTTAAAGAACTGTTTATCTTACGTCTGATGTTTGCTGTGAGGTACG
aaacttgaattaattttctcttttctggAAAATACTCTCTTTTCTGTGTA
CTCAATTTGATGACGGGATGATTTTATAACATAGTAGAATCCCAAGTTAA
AAACATGTTTACCATcagatttttttgttaaaaataattaaatcgAACTT
TAAGGCGTCTGTTCCCGGCATAATATTCATGTTGATTAAACTGGCCATAT
TTACGTAACTTATAGGTTTTAAAGAGTATCACCTTATCCCTTTATTTTTC
CAAAGCggctgatttttttataaagagtttttcttgcttttgaaGCAAGT
TTCCATTGACCGCAAAGATATGTCTGCAACTTCTGGTACTATCTTTAAAA
TCTGTACAAATTTCCAAGAAAAGAGCACCTGTGGATCAAAAAATTGTAAG
CATGGTAGATTCACCCATCCCCCTCCTGCCCCCTTAGAGCTTCAGTCGCC
GAAGAAGCTTGGACTTCATAGTATCAAAAAATAGGAGAAGAAAAGGAAGG
TCACTTCTAAAAGGTGGAGATTGATCTCGCACTGATCGCCGAGATCTTGG
TTTTCCAGCGCCATTTCATCTAATTGCCGCTGCAGACTTTGAATTtgctg
taaatttgaaaaaatatatggaaTATAATAAGATAACTATGAACTTTGTG
AAgcaatttttcattaaaagtgcACTACCACTTAAAAACGAGTCTAAAAA
GGaactataaaataaaacacaaagaGCACTTAGAACCAAAAACGATCCAA
AAGTTAAAACACCATGACCAGAAAATACTTACCACCGATGGctgaaaaaa
tttcaatatcACTCAGAGTGATGTAGTTTGGATGAATTTGTCTTTTCTGC
AGTCGAGTCACAAGTCATAACTAATTCAATTAGTCATTTTTACGAAATTC
AATGTCATATTTCATTTCGAAATGATTGAAAACCCGAAAAGTTACCTTTC
TTTTAAACGTAAGCGTCCAGTTCACATTTCATCTCGATAATCGTCACGTT
TTTTCACTATTGAAAACCAGTGAAAACAAGTTGTAAAAAGCCATTGCTTT
GCATTATCCAGATAGTGATTGCCTACGATTTCTTTCGTTTCAAGCAGACA
ATAATTTTCTGCCATTCTGCCTGGCCGCACATTGTACGTGCAGATTGGTG
AACGAAAATAGCTTTGAAATAAAACCAAACCATCATTAAAGATAGTTTCC
AAATTGACCAAAAAGTCGATCCAGATAGTAATTGCctgatttcttttgtt
tgaagcagacaataattttctttcttgaaaCCATTTGCCAATCTGTTTTC
CAGTAACTGCATATGATTTCTTTCGTTTTAACATAATTTTCTGCTCTGAA
GCCATTTGccatattattttcaagcatttGTCTGTGGTTTCGCTCATGCT
AAAGACATAATTTTCTGCCCTGAAGCCATTTGCCAATCGGAAGATCATTT
GATGAGGGTTGCCCGGGCCTCTTGCCGCACATTGAACGTGCAAGTTCGTA
AATGGGATTATCTTAAATAAAACCAAACCATCATTAAAGATATAGTTTCC
AAATTGACCAAGAAGTCGATCGTCTTGTAAAAAGCCATTGCTTTGCATTA
TGTATCCAGACAGTAGCTTATACTTACGTGTTGGTCGGCTCTGAAACCAT
TTGCTATATTCCCCTCCAACATTTGCCTGTGGTTACGTTCATGATTGCGC
TCCGCCGTTAGCTGGCGTATATGGTTCTCCGCGTGTAGGAGCTCGCCTCT
GAGTTGATTGATCAATAACTAAAACAACACAAGATAAAGGCAAAAGTGAA
ATGAACACGAACTTGATTGATGTGTAACTAGCAAGAAACAATAATAATAC
TTGCCTTGCAGCAAC Coding sequence (CDS) from alignment at sc0000319:316739..319203 >TCONS_00019150 ID=TCONS_00019150|Name=TCONS_00019150|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000319:316739..319203 (Clytia hemisphaerica)
TCACATTTCATCTCGATAATCGTCACGTTTTTTCACTATTGAAAACCAGT
GAAAACAAGTTGTAAAAAGCCATTGCTTTGCATTATCCAGATAGTGATTG
CCTACGATTTCTTTCGTTTCAAGCAGACAATAATTTTCTGCCATTCTGCC
TGGCCGCACATTGTACGTGCAGATTGGTGAACGAAAATAGCTTTGAAATA
AAACCAAACCATCATTAAAGATAGTTTCCAAATTGACCAAAAAGTCGATC
CAGATAGTAATTGCctgatttcttttgtttgaagcagacaataattttct
ttcttgaaaCCATTTGCCAATCTGTTTTCCAGTAACTGCATATGATTTCT
TTCGTTTTAACATAATTTTCTGCTCTGAAGCCATTTGccatattattttc
aagcatttGTCTGTGGTTTCGCTCATGCTAAAGACATAATTTTCTGCCCT
GAAGCCATTTGCCAATCGGAAGATCATTTGATGAGGGTTGCCCGGGCCTC
TTGCCGCACATTGAACGTGCAAGTTCGTAAATGGGATTATCTTAAATAAA
ACCAAACCATCATTAAAGATATAGTTTCCAAATTGACCAAGAAGTCGATC
GTCTTGTAAAAAGCCATTGCTTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019150-exon-sc0000319-1491911889:316739..319203 | TCONS_00019150-exon-sc0000319-1491911889:316739..319203 | Clytia hemisphaerica | exon |
| TCONS_00019150-exon-sc0000319-1510915933:316739..319203 | TCONS_00019150-exon-sc0000319-1510915933:316739..319203 | Clytia hemisphaerica | exon |
| TCONS_00019150-exon-sc0000319-1575043694:316739..319203 | TCONS_00019150-exon-sc0000319-1575043694:316739..319203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:316739..319203 . |
Blast
The following BLAST results are available for this feature:
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