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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019149 ID=TCONS_00019149|Name=TCONS_00019149|organism=Clytia hemisphaerica|type=transcript|length=2026bp
CGCAAATATTTATTTTGCTTGCTACTTGCTcacttatttttaaattttac
tgatggacttgaagaggccccccagcggcacacctaatcacgccatcacg
caaaatgattttctccatcacgcatcacgaaaaaaatagcgaaaaatagc
ccaaatcacgcaccacgcctcaaatttttgctgtATCATGCATCACGcta
aaatcttgatcacgccatcacgccaaaaagaATCTCTcctcacgccatca
cgcaagaaaaaagtccaaatcacgcaaACACGTAAACCGCTGTGGGGGCC
TCCTTGAACGTTATTAGATTCATAAAAAAGCGAACTAGGGGACTGGTTTC
CAGTTTGTAACAACTGAAATCATTTAAAAAGATCATTTGGAACACAATAA
TTTCAAGTCTGCACATACCTTATCAATTGGAGAGCTTCGGCTTGAGACTA
AAAAGTTATTTCATTATTCTATTCCTGTAGGACGAGCGTGAACAGAGGAT
AGCGGCGGAACAAGCAGCCGATAATTTTCACCACGCAAATTTGGTAAGAG
CATAGTCCGTATAAGAAACAAGACCCTTCCAGacccttttgtttctttct
attgttgcgAACTTGGACTTATGTTGAGGAGTATTTGATAACGTTTTTAT
ACGAAGTATGGTAAGAATAAGTATTTGTTTTCATGACACGGGCAAGACAC
GCTACAAAAGCACAATGAACTTTATACAGTTTTTGTTTTATACCTAGAAC
CTATTAATATACTCTTTtggtgcttaattgtaggggggtcatttcgcaat
ttttggagaaaaaagtTACCGCCATATCACTTTATAATAATCCCCCTTTT
TATGACCTATATGCTACGAAGTGCATACACTGCAACTGGACAGGCTGAAT
CAACTTCGACACCCTGGTAAACATGGACGCGATTCCCAAGCTTGAAACCC
TGGTGAATATGGAAGCCATTCCGGCAACAAGGGTTCCATCTTTATTTTAT
CGTGTAAAAAGTCGCAATTCATTTAAAAACTTTAACAGCCTTTTTGGCCA
TTTCTTATTAAACTTGCCGCTACAAAGTCCAGTCATCCGGACCTTTATAA
AGCTCTTTCACGATAGTTGGAACTTTTCCTAACCGGAAATAACCTTAATA
TCAGTTTATCTTTCtctaaacccccccccctcaattTTAAGACTGTAATT
GAAAATCGCTCCGCCACTAACCACTTTTTTTCGTCTTAAAGTTATCTAGC
TATGTCAATTTACCAGGAGAACTTGCAACTGCAGCAGGAGCTGCAGAATT
GGCAGGATCAATGCTACATAAAACTTCACCTCTATCAGGTAATTCTATTT
CatccaaatttgaaaaaaaattccaaatcttACAGTTTACTTAATTATGT
CTATTTACCAGGAGATCATGCAGCTGCAGCAGGAGCTGCAGAATTGGCAG
GATCAGTGCTATATAAAACTTCACCTCTATCAGGTAATTCTATTTCatcc
aaatttgaaaaaaattccaaatcttACAGTTTACTTAATTATGTCTATTT
ACCAGGAGATCATGCAGCTGCAGCAGGAGCTGCAGAATTGGCAGGATCAG
GGCTATACAAAACTTCACCTCTATCAGGTAATTCTATTttatctaaattt
gaaaaaagaatcttAAATCTTACAGTTGACTTAAAggggaactaaacatt
ttttgaggTCATGCTTTTTTTGTCTCCAAGAACTACACAACACAGTCTAA
gttcgaaaaaatataatttccactCTTAATCCTTTTCCTATTTTGTAtaa
aaccttctttaaaaaacgtataatttgtttaaaatgaaCCCCCACTCTAC
Acatgtttgtgacgtcatatcgttcatattttctatgaattttgtgtatg
ttcatcaactttaaagcttgatatttagtgaacaagaaataataggaaga
tagtaaaatcatttttgatttcaggaAGGATTCAGTTTTACGTGGACTAA
TTTTGGGTTGTCAGCTTATATTCCAA Run BLAST on NCBI protein sequence of TCONS_00019149-protein >TCONS_00019149-protein ID=TCONS_00019149-protein|Name=TCONS_00019149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MSIYQENLQLQQELQNWQDQCYIKLHLYQVILFHPNLKKNSKSYSLLNYV
YLPGDHAAAAGAAELAGSVLYKTSPLSGNSISSKFEKNSKSYSLLNYVYL
PGDHAAAAGAAELAGSGLYKTSPLSGNSILSKFEKRILNLTVDLKGN Run BLAST on NCBI transcript from alignment at sc0000319:314019..316044 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019149 ID=TCONS_00019149|Name=TCONS_00019149|organism=Clytia hemisphaerica|type=transcript|length=2026bp|location=Sequence derived from alignment at sc0000319:314019..316044 (Clytia hemisphaerica)
TTGGAATATAAGCTGACAACCCAAAATTAGTCCACGTAAAACTGAATCCT
tcctgaaatcaaaaatgattttactatcttcctattatttcttgttcact
aaatatcaagctttaaagttgatgaacatacacaaaattcatagaaaata
tgaacgatatgacgtcacaaacatgTGTAGAGTGGGGGttcattttaaac
aaattatacgttttttaaagaaggttttaTACAAAATAGGAAAAGGATTA
AGagtggaaattatattttttcgaacTTAGACTGTGTTGTGTAGTTCTTG
GAGACAAAAAAAGCATGAcctcaaaaaatgtttagttccccTTTAAGTCA
ACTGTAAGATTTaagattcttttttcaaatttagataaAATAGAATTACC
TGATAGAGGTGAAGTTTTGTATAGCCCTGATCCTGCCAATTCTGCAGCTC
CTGCTGCAGCTGCATGATCTCCTGGTAAATAGACATAATTAAGTAAACTG
TaagatttggaatttttttcaaatttggatGAAATAGAATTACCTGATAG
AGGTGAAGTTTTATATAGCACTGATCCTGCCAATTCTGCAGCTCCTGCTG
CAGCTGCATGATCTCCTGGTAAATAGACATAATTAAGTAAACTGTaagat
ttggaattttttttcaaatttggatGAAATAGAATTACCTGATAGAGGTG
AAGTTTTATGTAGCATTGATCCTGCCAATTCTGCAGCTCCTGCTGCAGTT
GCAAGTTCTCCTGGTAAATTGACATAGCTAGATAACTTTAAGACGAAAAA
AAGTGGTTAGTGGCGGAGCGATTTTCAATTACAGTCTTAAaattgagggg
ggggggtttagaGAAAGATAAACTGATATTAAGGTTATTTCCGGTTAGGA
AAAGTTCCAACTATCGTGAAAGAGCTTTATAAAGGTCCGGATGACTGGAC
TTTGTAGCGGCAAGTTTAATAAGAAATGGCCAAAAAGGCTGTTAAAGTTT
TTAAATGAATTGCGACTTTTTACACGATAAAATAAAGATGGAACCCTTGT
TGCCGGAATGGCTTCCATATTCACCAGGGTTTCAAGCTTGGGAATCGCGT
CCATGTTTACCAGGGTGTCGAAGTTGATTCAGCCTGTCCAGTTGCAGTGT
ATGCACTTCGTAGCATATAGGTCATAAAAAGGGGGATTATTATAAAGTGA
TATGGCGGTAacttttttctccaaaaattgcgaaatgacccccctacaat
taagcaccaAAAGAGTATATTAATAGGTTCTAGGTATAAAACAAAAACTG
TATAAAGTTCATTGTGCTTTTGTAGCGTGTCTTGCCCGTGTCATGAAAAC
AAATACTTATTCTTACCATACTTCGTATAAAAACGTTATCAAATACTCCT
CAACATAAGTCCAAGTTcgcaacaatagaaagaaacaaaagggtCTGGAA
GGGTCTTGTTTCTTATACGGACTATGCTCTTACCAAATTTGCGTGGTGAA
AATTATCGGCTGCTTGTTCCGCCGCTATCCTCTGTTCACGCTCGTCCTAC
AGGAATAGAATAATGAAATAACTTTTTAGTCTCAAGCCGAAGCTCTCCAA
TTGATAAGGTATGTGCAGACTTGAAATTATTGTGTTCCAAATGATCTTTT
TAAATGATTTCAGTTGTTACAAACTGGAAACCAGTCCCCTAGTTCGCTTT
TTTATGAATCTAATAACGTTCAAGGAGGCCCCCACAGCGGTTTACGTGTt
tgcgtgatttggacttttttcttgcgtgatggcgtgaggAGAGATtcttt
ttggcgtgatggcgtgatcaagattttagCGTGATGCATGATacagcaaa
aatttgaggcgtggtgcgtgatttgggctatttttcgctatttttttcgt
gatgcgtgatggagaaaatcattttgcgtgatggcgtgattaggtgtgcc
gctggggggcctcttcaagtccatcagtaaaatttaaaaataagtgAGCA
AGTAGCAAGCAAAATAAATATTTGCG Coding sequence (CDS) from alignment at sc0000319:314019..316044 >TCONS_00019149 ID=TCONS_00019149|Name=TCONS_00019149|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000319:314019..316044 (Clytia hemisphaerica)
ttagttccccTTTAAGTCAACTGTAAGATTTaagattcttttttcaaatt
tagataaAATAGAATTACCTGATAGAGGTGAAGTTTTGTATAGCCCTGAT
CCTGCCAATTCTGCAGCTCCTGCTGCAGCTGCATGATCTCCTGGTAAATA
GACATAATTAAGTAAACTGTaagatttggaatttttttcaaatttggatG
AAATAGAATTACCTGATAGAGGTGAAGTTTTATATAGCACTGATCCTGCC
AATTCTGCAGCTCCTGCTGCAGCTGCATGATCTCCTGGTAAATAGACATA
ATTAAGTAAACTGTaagatttggaattttttttcaaatttggatGAAATA
GAATTACCTGATAGAGGTGAAGTTTTATGTAGCATTGATCCTGCCAATTC
TGCAGCTCCTGCTGCAGTTGCAAGTTCTCCTGGTAAATTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019149-exon-sc0000319-1491911889:314019..316044 | TCONS_00019149-exon-sc0000319-1491911889:314019..316044 | Clytia hemisphaerica | exon |
| TCONS_00019149-exon-sc0000319-1510915933:314019..316044 | TCONS_00019149-exon-sc0000319-1510915933:314019..316044 | Clytia hemisphaerica | exon |
| TCONS_00019149-exon-sc0000319-1575043694:314019..316044 | TCONS_00019149-exon-sc0000319-1575043694:314019..316044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:314019..316044 . |
Blast
The following BLAST results are available for this feature:
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