TCONS_00019146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019146
Unique NameTCONS_00019146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019146 ID=TCONS_00019146|Name=TCONS_00019146|organism=Clytia hemisphaerica|type=transcript|length=243bp
AGTGGACTGTTTTCAAAGCAGCTAATTGGATCTTTCCATTGCCAATCAGT
TGACTCATCCAATCCATTATGATAGAAACGGCACCCTGTTCGATCAGAAT
CTCAGCAAGATCTTCGAATATCGAAATCTCTTGAATAACATTTAAGAAGA
TATACATGAAATCTGGATAATCTTCATAAAAGTTCAGTCGATTGATGATG
TAGACAACACTTTCTGATGTGAAGTAGCCTATGGATGCTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000319:298122..298364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019146 ID=TCONS_00019146|Name=TCONS_00019146|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at sc0000319:298122..298364 (Clytia hemisphaerica)
CAAAAGCATCCATAGGCTACTTCACATCAGAAAGTGTTGTCTACATCATC
AATCGACTGAACTTTTATGAAGATTATCCAGATTTCATGTATATCTTCTT
AAATGTTATTCAAGAGATTTCGATATTCGAAGATCTTGCTGAGATTCTGA
TCGAACAGGGTGCCGTTTCTATCATAATGGATTGGATGAGTCAACTGATT
GGCAATGGAAAGATCCAATTAGCTGCTTTGAAAACAGTCCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010743XLOC_010743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019146-exon-sc0000319-1491911889:298122..298364TCONS_00019146-exon-sc0000319-1491911889:298122..298364Clytia hemisphaericaexon
TCONS_00019146-exon-sc0000319-1510915933:298122..298364TCONS_00019146-exon-sc0000319-1510915933:298122..298364Clytia hemisphaericaexon
TCONS_00019146-exon-sc0000319-1575043694:298122..298364TCONS_00019146-exon-sc0000319-1575043694:298122..298364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:298122..298364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.73757	7.7039	3.39279	2.55674	1.15587	3.65353	1.6521	2.06328	3.80341	1.23543	0	5.52456	2.29423	5.32793	1.13115	5.32631	9.3705	3.75192	0	3.81374	2.47173	3.06197	4.1013	3.06271	1.84049	4.10649	1.76473	3.36348	0	3.87702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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