TCONS_00019145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019145
Unique NameTCONS_00019145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019145 ID=TCONS_00019145|Name=TCONS_00019145|organism=Clytia hemisphaerica|type=transcript|length=613bp
AGGATGAGTGGAGAGCACACCAAATAGAACACGGTACCAACCATTCTTGA
TCAACATAAGCCACACACCATCTCGATGTTGTAAGAGGAGACATTCAAGC
AATTCAATCCCATACAATGCAACATCTTCTTCAAACATACAAATCTCaat
gcttttaatgatcacttTAGTGAAATTCAACATATTATTGACAGGGTTTT
GATCcgtcaaatcaaaatgagataaTCTCTTGAAAAATTGCACCAAGAAG
TTCAACAGAATGACAACAATGCTTGTTTCTGCATTCTCTTCCCCAGTTAG
ACACTTTTCTAGTTCATTCAGTAGCAATGTCTGAAGGTCAAATTCAAAGT
CCAACTCATAAAAAAAGGTTCTTGAAAACTGGCGAAAGTCATCTTTGTCT
TGACAATATTCCAATATCTTGGTTAATACACAAATAGCAAGCTCAACATT
AGTAGTAGATATTTCTCGGTATAGTATATTTAAGTAGGGTTTTTTCATCA
GCATTGGATATAAACAATGAGGAAGATCATCAGAAGTGCCCTCAATACTT
AATATATCTTCAAGTACTTTTGATATACATGTCAGATTATTGTTTAAAGT
TAATTTGTTCAAA
Run BLAST on NCBI

protein sequence of TCONS_00019145-protein

>TCONS_00019145-protein ID=TCONS_00019145-protein|Name=TCONS_00019145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
LNKLTLNNNLTCISKVLEDILSIEGTSDDLPHCLYPMLMKKPYLNILYRE
ISTTNVELAICVLTKILEYCQDKDDFRQFSRTFFYELDFEFDLQTLLLNE
LEKCLTGEENAETSIVVILLNFLVQFFKRLSHFDLTDQNPVNNMLNFTKV
IIKSIEICMFEEDVALYGIELLECLLLQHRDGVWLMLIKNGWYRVLFGVL
STHP
Run BLAST on NCBI

transcript from alignment at sc0000319:296828..297440

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019145 ID=TCONS_00019145|Name=TCONS_00019145|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0000319:296828..297440 (Clytia hemisphaerica)
TTTGAACAAATTAACTTTAAACAATAATCTGACATGTATATCAAAAGTAC
TTGAAGATATATTAAGTATTGAGGGCACTTCTGATGATCTTCCTCATTGT
TTATATCCAATGCTGATGAAAAAACCCTACTTAAATATACTATACCGAGA
AATATCTACTACTAATGTTGAGCTTGCTATTTGTGTATTAACCAAGATAT
TGGAATATTGTCAAGACAAAGATGACTTTCGCCAGTTTTCAAGAACCTTT
TTTTATGAGTTGGACTTTGAATTTGACCTTCAGACATTGCTACTGAATGA
ACTAGAAAAGTGTCTAACTGGGGAAGAGAATGCAGAAACAAGCATTGTTG
TCATTCTGTTGAACTTCTTGGTGCAATTTTTCAAGAGAttatctcatttt
gatttgacgGATCAAAACCCTGTCAATAATATGTTGAATTTCACTAaagt
gatcattaaaagcattGAGATTTGTATGTTTGAAGAAGATGTTGCATTGT
ATGGGATTGAATTGCTTGAATGTCTCCTCTTACAACATCGAGATGGTGTG
TGGCTTATGTTGATCAAGAATGGTTGGTACCGTGTTCTATTTGGTGTGCT
CTCCACTCATCCT

Coding sequence (CDS) from alignment at sc0000319:296828..297440

>TCONS_00019145 ID=TCONS_00019145|Name=TCONS_00019145|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000319:296828..297440 (Clytia hemisphaerica)
TTGAACAAATTAACTTTAAACAATAATCTGACATGTATATCAAAAGTACT
TGAAGATATATTAAGTATTGAGGGCACTTCTGATGATCTTCCTCATTGTT
TATATCCAATGCTGATGAAAAAACCCTACTTAAATATACTATACCGAGAA
ATATCTACTACTAATGTTGAGCTTGCTATTTGTGTATTAACCAAGATATT
GGAATATTGTCAAGACAAAGATGACTTTCGCCAGTTTTCAAGAACCTTTT
TTTATGAGTTGGACTTTGAATTTGACCTTCAGACATTGCTACTGAATGAA
CTAGAAAAGTGTCTAACTGGGGAAGAGAATGCAGAAACAAGCATTGTTGT
CATTCTGTTGAACTTCTTGGTGCAATTTTTCAAGAGAttatctcattttg
atttgacgGATCAAAACCCTGTCAATAATATGTTGAATTTCACTAaagtg
atcattaaaagcattGAGATTTGTATGTTTGAAGAAGATGTTGCATTGTA
TGGGATTGAATTGCTTGAATGTCTCCTCTTACAACATCGAGATGGTGTGT
GGCTTATGTTGATCAAGAATGGTTGGTACCGTGTTCTATTTGGTGTGCTC
TCCACTCATCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010742XLOC_010742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019145-exon-sc0000319-1491911889:296828..297440TCONS_00019145-exon-sc0000319-1491911889:296828..297440Clytia hemisphaericaexon
TCONS_00019145-exon-sc0000319-1510915933:296828..297440TCONS_00019145-exon-sc0000319-1510915933:296828..297440Clytia hemisphaericaexon
TCONS_00019145-exon-sc0000319-1575043694:296828..297440TCONS_00019145-exon-sc0000319-1575043694:296828..297440Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019145-proteinTCONS_00019145-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:296828..297440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.89124	2.87295	2.5211	1.74722	1.34977	0.465584	0.719593	1.80176	0.652026	0	0	0.460087	0.463324	0	0.95216	0.351645	0.219879	0.172064	0.15743	0.184548	1.00056	1.86372	1.62499	1.47572	0.134288	1.611	2.36027	1.05613	0.924506	0.706726
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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