TCONS_00019122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019122
Unique NameTCONS_00019122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019122 ID=TCONS_00019122|Name=TCONS_00019122|organism=Clytia hemisphaerica|type=transcript|length=634bp
cttttgcagggtagaataaaaaaatctaaaaaatcacaaaaaaagtaaaa
aaatggatGATAATCTTAGGAATAAACCAGCCTCAGAATTGGCACCTAAA
GCAACTCATTGTGGATTTTTACACAAATACAACCGAAAAGATAAAGGACA
ATACAGATATTGCATGGTGGTCAGTGGCTGTTTAATTTATTATGAGAAAA
AATCGAGTAAAAGTCCACGAAAAGCGCTCAACCTTGTTGCTGGAGGATAC
AGTTTGGCCACACACGATAATGAATATTTATTTGAACTTCGAAATCCATC
GTTTAAGGATAAAAGTTATCGCTTCAGTGCTGGAAGTGAAGATGAATACA
CAAAATGGGTAGATCAATTGAAAGCTATATTGAATCAAGCCGACATTGTG
GAGAACAAGCCGTTTCAGAGCCATGCTGATTTCTTCCACACACCAACACC
AAAGAGAAGGTCTTATGTATCAAGTCCTTCCATCTCATCAACTGAATCGT
TCGATACTGgaaCAGCAACAGAATTTCATGAAGCAACAAGTCCAATTTTG
AAAAGTGCTCCTCATAGAAGAAGCACTGTTTTGGTTTCTATGGTCTACTG
CCTCAACACTCATTTGATGATTCTTCAATAACGC
Run BLAST on NCBI

transcript from alignment at sc0000319:261066..264769-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019122 ID=TCONS_00019122|Name=TCONS_00019122|organism=Clytia hemisphaerica|type=transcript|length=3704bp|location=Sequence derived from alignment at sc0000319:261066..264769- (Clytia hemisphaerica)
CTTTTGCAGGGTAGAATAAAAAAATCTAAAAAATCACAAAAAAAGTAAAA
AAATGGATGATAATCTTAGGAATAAACCAGCCTCAGAATTGGCACCTAAA
GCAACTCATTGTGGATTTTTACACAAATACAACCGAAAAGATAAAGGTAA
GACAGGCATGGTATTTAAAATTTACAAAATCAAGTTCATTCCCCAAAAAT
AATCAATTCCATTACACTGTCAGAGAATTAGCTGGACTTTCTCCACAGGC
AAAATCGCTTCCATAAAATGTCTTTCCGGTCGAATTTAACCTTACTAACA
TTACTTACTTAGCAAAAAAACATCCTTTATATTTAGACCTAGTTTTGGAA
AGTCTCAACAACTCCTTTTTTCAGGACAATACAGATATTGCATGGTGGTC
AGTGGCTGTTTAATTTATTATGAGAAAAAATCGAGTAAAAGTCCACGAAA
AGCGCTCAACCTTGTTGCTGGAGGATACAGGTATTTGCAAAGCAATAATT
ACAAGATTCTAGTTAATTAAAATTACCCCACACAAGAGGCTGCACCCCAC
TCTAGAGTTGAGACTCTGTCATTGTCTTATTTACTCGTAATGGCCCCATA
TAATGTCATGGTCCCCCACTATTTTGAAATAAAAAAGTTTTTTTTTATAT
TACGATTCGTGCTTTCAATAGGCCTCAATAGCTTTATTTCAAAGGAGGCC
ATTTTAAGAGAGGGGGTCAAAAAATTTCTCCCGGCAGTGTAAAACTGCCA
AAAAATTGTTCAACCTCTTTAGACCATGTTCACACGTTACTGGTCCGTTT
CGCTCCGGTATGATTTTCGCTACGGATCGAGTGTGTTCATATTGGTTTCG
GAACGTTTTCGGAGCAGTTCCGTTCCGATGAAAAAAAATGGAGCGAAACC
GTTTCGATCTGTTTTGCTTTGTAATGTCTTCTTTTTTGACGTTTCGAATT
TGGACGTTCACACTTGTTTCGGAACCGTTTCGTTTCGTTTCGGAACGGAA
CCGTAACGTCTGAACATGGTCTTAATCGCCACAACTTTGGCCGATCCACT
TTCCTGATCAATGGCCTGGCTTGGTTAGGAGCGTTTTTCTAGCTTTCTTT
TTTGTTTCTTTACTTCAGTTTGGCCACACACGATAATGAATATTTATTTG
AACTTCGAAATCCATCGTTTAAGGATAAAAGTTATCGCTTCAGTGCTGGA
AGTGAAGATGAATACACAGTACGGTTTGTTCCAATTTCTTGTCCTTAGCA
TTTTTTAATTTGTTAAAATATGAGAAAAAGTCATTCAAATGTCCGGCGAC
TAAGAATTGACGTTTTACATTGATAGTCCGTCGACAACTATACATATACT
TTACAGTCTTTCATATTCAATGATTGAAAGTACAAATAAAATCTACTTAT
GACTGTACTTTGCTTTCTGATAATTTTTATTGTGATGATGAGTCCAGTTA
AGACACCCCCTTCTCACGGACCTGGTGGTATTTTATCAGCCAGTGGGAGT
AAAAATAACGGACCAAAACTCGATGGGGGTTGATATTCCCATGNAATGAT
GAGTCCATTTAAGACACCCCCTTCTCACGGACCTGGTGGTATTTTATCAG
CCAGTGGGAGTAAAAATAACGGACCAAAACTCGATGGGGGTCGATATTCC
CATGTTTTTATGGCTGGGGATTTTAATTCCATTGTTTTCTAGGCAGAAAA
TTCAGTGGGGATGGAAAAAATAGCACAACATTTTAAAGTGGGGCTTTGTT
TATCCGATTATTTTCAGTGGGGACAAAGAATAGAGTATAGTTTTCCACTG
GGGACGATAATTTGGCCAATTTTTCTAGTGGGAAGGGTTCCCAGTATGTC
TGAGAAGGGGGTGTGTTAAGTAGACCAGAGGATATCGCCATTATGAAATT
TGCCAAAAATTTGTATGAAAACACTATATCTCCCAATTTAAAAGAAATTA
ATCCCTTGGTCATGGTTTTCCGTTTGTTTTTCTCAACAAAGGGACTGGGT
TTAGTGGTATGGATTTGAAAATAGCCTACCATTGACACCGATTATGTTCT
AAATTTGATGGTTCAGTACATCTTTCCATACCCCTTTATGAGGATTTTCC
TTGTTAGCTTGTAATCTTTGTGAATTCTCATGTCATAGAAATGGGTAGAT
CAATTGAAAGCTATATTGAATCAAGCCGACATTGTGGAGAACAAGCCGTT
TCAGAGCCATGCTGATTTCTTCCACACACCAACACCAAAGAGAAGGTCTT
ATGTATCAAGTCCTTCCATCTCATCAACTGAATCGTTCGATACTGGTATG
TTAACATCCCGGGGGGTGGGTACTAGGTTTGCCAGATGACGGGTATGTCC
GAACCAAAGTTCGAAAATCCACCCTTAGAGAGGCTGAATTTCGAAAATAT
TTTCCATTTTTTTGGCGTTTTTGACACCCTTAGAGAGACCATTTCCACAA
ATTTCAGCCACAATCTTCAAATTTTAGTCCAAATTTTAAGAATTTATGAC
CCTTTTTAGGGACCCTTATGGTTCGCACATACCCGGCACCCATTTCGCCT
AAGTACCCCTCCCCTGCCCCGGGTTGACATGTTTTAATCAAAAACACCTC
TACCCTGTAGCACCTGTAGAATGTCTTCTCACTATTGAGATAAGGGTTTC
TATCGAAATTCCAATGGGTATTGAAATTCTATTGTTCTCAGGTCGAAAAA
TCCAGTTGAGATAATATAGGAGTGCAATTTTTTCCAATGTTTGAATATGG
ATGAAACAAAGTCGATTTTCCAGTGAAGCTGAAATTGTTGGGTGTTCTTC
CCACCGGCGACGAAAAATTAACCAAAATGTCTATGTTTGGCGGGATAGAT
TTTGAACACCCCTGTGTCACAGACCCGTTGGGTTCAAAATCTATCACCAA
CAAATATTCAGTCACGATCTTTTATAGTATTGACCACTTCTTATCTTGAC
AGTACAGAAAAAATATACGCTTTTTTTTATAAGAATACCTTCTATAAGAA
TATCAGGGTGAAAATTGCCCAAATCTTAAGAATACCCTAAGTACCCTCTA
GGGTGAATTTCACAGAATTTGATAAGAATAAACTCATTTTGTATTTGGTT
AACAGAAAAAACTGCTTCCTTTGTCAGATATAAATTGAAGCTATTAGGTA
GAAATGTAATTTTAACCCAAATGTTCACTCAAAAGTCTAAAACTCTCAAA
TTGATCATTTATCATGTTTGTAATAAAGTCAAGTCCAAAAAAGTGAGAAT
ACATTAAGAATATTTCACCCTCAATCTTGGCACTTTCTTAAGAATACTTC
ACCATCATCCAAAATACACTATTCTTATAAAAAAAGCATGTAGCTGAATA
GTTTTTGGGAGCTTAAACGTTGTCAGGTAATTATTATTTCATTTTTAGGA
ACAGCAACAGAATTTCATGAAGCAACAAGTCCAATTTTGAAAAGTGCTCC
TCATAGAAGAAGCACTGGTGAGTTCCTTTTTTCGCATATTCCAATATTTG
GTCAAAACTTTGTAGAAATAAATGTCAATGGTTGCCAATCACGTTTGCTC
ATTGAATCTAATTATTCATCTTTCAAATTATTGAGTCTAGATATCTATGC
CTCGGTAACCTCCAGATTTTTTGAAAACTTTTTATCTTGCTTTTGCAGTT
TTGGTTTCTATGGTCTACTGCCTCAACACTCATTTGATGATTCTTCAATA
ACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010722XLOC_010722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019122-exon-sc0000319-1575043694:264624..264769TCONS_00019122-exon-sc0000319-1575043694:264624..264769Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1575043694:264290..264395TCONS_00019122-exon-sc0000319-1575043694:264290..264395Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1575043694:263552..263651TCONS_00019122-exon-sc0000319-1575043694:263552..263651Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1575043694:262475..262631TCONS_00019122-exon-sc0000319-1575043694:262475..262631Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1575043694:261303..261371TCONS_00019122-exon-sc0000319-1575043694:261303..261371Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1575043694:261066..261121TCONS_00019122-exon-sc0000319-1575043694:261066..261121Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1510915933:264624..264769TCONS_00019122-exon-sc0000319-1510915933:264624..264769Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1510915933:264290..264395TCONS_00019122-exon-sc0000319-1510915933:264290..264395Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1510915933:263552..263651TCONS_00019122-exon-sc0000319-1510915933:263552..263651Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1510915933:262475..262631TCONS_00019122-exon-sc0000319-1510915933:262475..262631Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1510915933:261303..261371TCONS_00019122-exon-sc0000319-1510915933:261303..261371Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1510915933:261066..261121TCONS_00019122-exon-sc0000319-1510915933:261066..261121Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1491911889:264624..264769TCONS_00019122-exon-sc0000319-1491911889:264624..264769Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1491911889:264290..264395TCONS_00019122-exon-sc0000319-1491911889:264290..264395Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1491911889:263552..263651TCONS_00019122-exon-sc0000319-1491911889:263552..263651Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1491911889:262475..262631TCONS_00019122-exon-sc0000319-1491911889:262475..262631Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1491911889:261303..261371TCONS_00019122-exon-sc0000319-1491911889:261303..261371Clytia hemisphaericaexon
TCONS_00019122-exon-sc0000319-1491911889:261066..261121TCONS_00019122-exon-sc0000319-1491911889:261066..261121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:261066..264769 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.63611	0.67601	0	1.02144	2.03583	1.05236	0.798137	2.13015	0.915712	0	0	0	0.809361	0	0.444824	1.93139	0.199765	0.336868	1.27101	0	0.64336	0	0.838359	0	0.344726	0.676815	0	0	0.562384	1.55284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top