|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019115 ID=TCONS_00019115|Name=TCONS_00019115|organism=Clytia hemisphaerica|type=transcript|length=7899bpRun BLAST on NCBI protein sequence of TCONS_00019115-protein >TCONS_00019115-protein ID=TCONS_00019115-protein|Name=TCONS_00019115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1509bp NLYQLSIKYRRRTWTVFRRCYIEKKFVEMPMYQCFGTLLEGPFFQNELGKRun BLAST on NCBI transcript from alignment at sc0000319:125572..136660- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019115 ID=TCONS_00019115|Name=TCONS_00019115|organism=Clytia hemisphaerica|type=transcript|length=11089bp|location=Sequence derived from alignment at sc0000319:125572..136660- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000319:125572..136660- >TCONS_00019115 ID=TCONS_00019115|Name=TCONS_00019115|organism=Clytia hemisphaerica|type=CDS|length=31710bp|location=Sequence derived from alignment at sc0000319:125572..136660- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019115 vs. Swiss-Prot (Human)
Match: ZNFX1 (NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 7.362e-46 Identity = 67/189 (35.45%), Postives = 91/189 (48.15%), Query Frame = 1
Query: 4474 GKSVFFWHHT--EVETKD-RSVTNKEEATRAVKLALFLIQQGYSPDKVTILATYRGQTALIRRTMREYEKKFQHLITTKDDVPEITKFDKAAANKNGKETTTKESVKIHTVDMYQGDENDFVIVSLVRSNAAGKIGFLGERNRRCVAQSRARCGVYFIGNSDMFFPNPTWRPMIQKLIERGCVGXPERL 5031
++FF H E E ++ +S N+ EA V+L + + Q Y P ++TIL TY GQ +R+ M T V++H VD YQG+END +++SLVRSN GK+GFL NR CVA SRA+ G+Y IGN M P W +I L E +G RL
Sbjct: 1107 SSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLM---------------------------------PAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPMLRL 1262 HSP 2 Score: 99.3673 bits (246), Expect = 7.362e-46 Identity = 67/185 (36.22%), Postives = 108/185 (58.38%), Query Frame = 2
Query: 3914 ENLWEIESQDRVQFVQKIIAKQTCEVRANFQTNLRTYEDLCKQKTELENQHTAEILGGKQIVGVTITGASINQSLLKEIQPDIXXXXXXXXXXXXXXXXSIGTWTKYMLMIGDHQQLRPPVDTYHLRKDYNFDISMMERLINNNLPYSTLKLQNRQRPEFADLLL-DIYGDLRTNYERVKDNHPA 4465
E++W+++ R Q + + + R + R Y ++ EL Q IL Q+VG+T TGA+ + +L++++P IV+VEEAAEVLE +A++ +++++IGDHQQLRP + Y L K++N ++S+ ERL+ N+P+ L Q+R PE A LL IY DL +NHP+
Sbjct: 920 EDVWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDL--------ENHPS 1096 HSP 3 Score: 151.754 bits (382), Expect = 4.667e-43 Identity = 123/399 (30.83%), Postives = 166/399 (41.60%), Query Frame = 1
Query: 5203 GKSVFFWHHT--EVETKD-RSVTNKEEATRAVKLALFLIQQGYSPDKVTILATYRGQTALIRRTMREYEKKFQHLITTKDDVPEITKFDKAAANKNGKETTTKESVKIHTVDMYQGDENDFVIVSLVRSNAAGKIGFLGERNRRCVAQSRARCGVYFIGNSDMFFPNPTWRPMIQKLIERGCVGDALNIVCEHHPKTPFPVKNAEAL--ALGNFCKQPCMNKMSCGKHMCRKVCQPPHSH-----------------------------QPCPEKVQFQHMVCGHLDTKRCEEDAGQKRCQLNVNFHFPSCGHAGQKKCFEDFKTIKCHFVVAARLKCGHTGNKKCHENADG-------VKCEEPCAQVRACGHRCHN--HKCYEHAIKLTCPD-CERI 6267
++FF H E E ++ +S N+ EA V+L + + Q Y P ++TIL TY GQ +R+ M T V++H VD YQG+END +++SLVRSN GK+GFL NR CVA SRA+ G+Y IGN M P W +I L E +G L + C++HP+T V A C PC ++ CG H+C + C P S QPC KV CGH C CQ + CGH C ED + C +V +LKCGH+ KC + +G VKC C + CGH C H C+E C C+R+
Sbjct: 1107 SSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLM---------------------------------PAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCG-HVCTRACHPYDSSHKEFQCMKPCQKVICQEGHRCPLVCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSL-RCGHRCSHPCGEDCVQL-CSEMVTIKLKCGHSQPVKCG-HVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQQPCKRL 1468 HSP 4 Score: 45.0542 bits (105), Expect = 4.667e-43 Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 2
Query: 5006 DVWVXRKDYNFDISMMERLINNNLPYSTLKLQNRQRPEFADLLL-DIYGDLRTNYERVKDNHPA 5194
+V+ K++N ++S+ ERL+ N+P+ L Q+R PE A LL IY DL +NHP+
Sbjct: 1041 NVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDL--------ENHPS 1096 HSP 5 Score: 139.813 bits (351), Expect = 1.262e-32 Identity = 112/363 (30.85%), Postives = 183/363 (50.41%), Query Frame = 2
Query: 2198 LKPVVVQGAYNSVDDYIDVYFRLLREDCFHKLKKSIQELVSGTLD--LR-----DMNVYHNIALVGIALKESALYMALKISSVKEIK--DWETCPNLMFGNLLCISISGNFQQPIWVTVSSREMLKKDGVV-IVQSCWEWNESNDAEILLNLITAKGDVYMVESPTYYRAFQPVLKTLQCLDVENICFHDELIDLKPGPLTP--FLHAESCDFDAYIAYKKPSRRRMTLNEFFRT----PHSDNSIFDP-------------YQEHAVKTCLQNRIGIIQGPPGCGKTFIGIQMIRLLLSLS-----SLHDPKILVLTYKNHALDEFLKGIMRHVEAEKVVRLGGRSRDEELDAISLQTIRKK 3184
L+P ++ G Y+S Y+D +FRLLRED L++ I EL+ D LR D+ +Y + ++ S + ++ + K +K W+ L++G+L+C+S NF+ ++ TVS+RE ++D IVQ C+ + ++ LL + MVE+ Y+ A++ VL+ LQ + E++ F +++ P L DF I + PS EF R H ++ DP Q A++ L + IIQGPPG GKT++G+++++ LL+ SL ILV+ Y NHALD+FL+GI + + +VR+GGRS E L +L+ +R K
Sbjct: 353 LRPNIISGKYDSTAIYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPMCSSSGIVYKVQFDT-KPLKFVRWQNSKRLLYGSLVCMS-KDNFETFLFATVSNRE--QEDLCRGIVQLCF----NEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECNSHVKEPRYLLMGGRYDFTPLI--ENPS----ATGEFLRNVEGLRHPRINVLDPGQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVCYTNHALDQFLEGIY-NCQKTSIVRVGGRSNSEILKQFTLRELRNK 700 The following BLAST results are available for this feature:
BLAST of TCONS_00019115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.