TCONS_00019114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019114
Unique NameTCONS_00019114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019114 ID=TCONS_00019114|Name=TCONS_00019114|organism=Clytia hemisphaerica|type=transcript|length=1159bp
tacggtacaaggaaaaaaatgattcggaaattacaaaatggtgaaaaatc
aCTGTGAAAAATTACTCAACTAAAAATTACttctaaaaatacaaaaatca
taTTTACAAAAACTAAAAGTCCAGCTAAAGCTTATGACTAAAGCTTTCTT
TAAATGTTTCTTCGGAATTTCATTTCGACGAATTCCGGCAACAATGTGCG
GCCGTTTTGCCATGCGATCTCACCACGCGACGGACTTGTGAATTTGTAAA
CACCATTAAGGAGGGTATTGTAACAACTAGTATACCACCAGCCAGCTCTA
CCATATGATTGGGAGCAACTGCGGGGCCATTTGTCATTGTCTTGATCATA
GGTTGAAAATCGCGTGTTGTTGTGATTGTTGAAGACAGTTAAAGATGGAA
CGTTCCCCGTCAGTTGTTTTCCCAGGAACAAGAGATATTTATCCATCTCA
TCTCCGATACTGAATTGCTCATACTTCGCATACACCatttgtgtttttct
tttcatacgCATGTTGATCAAAAGCTGTGATTTCTTTGGTGCGAAGGGCG
ATTTCGTCAAATCACGGATGTGTTCGTTTCCAAGCCAGAATTCTCCTAAC
AGGCTTCCGAAACCTGATCTGTAGGTGGCCCAGTTTTGTTGGAAATCGAC
GGATCCGTCGTGACGTCGTTGGAACACGGTCCACCCTCCTCCTTGCGTTG
TTTGATCACAAAAGATTTGTTGTGAGCTAAAGGCGCGCCGTCCCAACAAA
TACAGTCCGTTCTTTTTATGCCCTGCATTGTAGAAATCCAAACAGTCAGT
CATTGGGTCGAGGTTTCTGCAATCGCAATATTCACTGCCTTTGATGTTTC
GACATGGAGCGCATGCACCTTCGAGCTTTAGAAGGAATCCAACTTTGTTG
GAAAGATCATTCAGTACGTCGTCCAACATTGTTCCAATAGTCCTGTTAGT
GACTGCAGCTTTGGTTTGAGTTATTTGCTGGACACATAGTAGCagtaaaa
agaatttgaaagccATTCTGATACTgtgtattttgtcttttttggttttt
tgtatCATTTTGTGCTCCTTTTATACTCTTTTTCTTGGCAAAACTTTTCA
cattaaaattcttttttgaatgtCTCATCAACTATTAGAGGGTGTGTTTT
CCAATTTTC
Run BLAST on NCBI

transcript from alignment at sc0000319:81487..82705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019114 ID=TCONS_00019114|Name=TCONS_00019114|organism=Clytia hemisphaerica|type=transcript|length=1219bp|location=Sequence derived from alignment at sc0000319:81487..82705- (Clytia hemisphaerica)
TACGGTACAAGGAAAAAAATGATTCGGAAATTACAAAATGGTGAAAAATC
ACTGTGAAAAATTACTCAACTAAAAATTACTTCTAAAAATACAAAAATCA
TATTTACAAAAACTAAAAGTCCAGCTAAAGCTTATGACTAAAGCTTTCTT
TAAATGTTTCTTCGGAATTTCATTTCGACGAATTCCGGCAACAATGTGCG
GCCGTTTTGCCATGCGATCTCACCACGCGACGGACTTGTGAATTTGTAAA
CACCATTAAGGAGGGTATTGTAACAACTAGTATACCACCAGCCAGCTCTA
CCATATGATTGGGAGCAACTGCGGGGCCATTTGTCATTGTCTTGATCATA
GGTTGAAAATCGCGTGTTGTTGTGATTGTTGAAGACAGTTAAAGATGGAA
CGTTCCCCGTCAGTTGTTTTCCCAGGAACAAGAGATATTTATCCATCTCA
TCTCCGATACTGAATTGCTCATACTTCGCATACACCATTTGTGTTTTTCT
TTTCATACGCATGTTGATCAAAAGCTGTGATTTCTTTGGTGCGAAGGGCG
ATTTCGTCAAATCACGGATGTGTTCGTTTCCAAGCCAGAATTCTCCTAAC
AGGCTTCCGAAACCTGATCTGTAGGTGGCCCAGTTTTGTTGGAAATCGAC
GGATCCGTCGTGACGTCGTTGGAACACGGTCCACCCTCCTCCTTGCGTTG
TTTGATCACAAAAGATTTGTTGTGAGCTAAAGGCGCGCCGTCCCAACAAA
TACAGTCCGTTCTTTTTATGCCCTGCATTGTAGAAATCCAAACAGTCAGT
CATTGGGTCGAGGTTTCTGCAATCGCAATATTCACTGCCTTTGATGTTTC
GACATGGAGCGCATGGGCCCTCGAGCTTGAGAAGGAATCCAACTTTGTTG
GAAAGANTTCGACATGGAGCGCATGCACCTTCGAGCTTTAGAAGGAATCC
AACTTTGTTGGAAAGATCATTCAGTACGTCGTCCAACATTGTTCCAATAG
TCCTGTTAGTGACTGCAGCTTTGGTTTGAGTTATTTGCTGGACACATAGT
AGCAGTAAAAAGAATTTGAAAGCCATTCTGATACTGTGTATTTTGTCTTT
TTTGGTTTTTTGTATCATTTTGTGCTCCTTTTATACTCTTTTTCTTGGCA
AAACTTTTCACATTAAAATTCTTTTTTGAATGTCTCATCAACTATTAGAG
GGTGTGTTTTCCAATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010717XLOC_010717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019114-exon-sc0000319-1575043694:81853..82705TCONS_00019114-exon-sc0000319-1575043694:81853..82705Clytia hemisphaericaexon
TCONS_00019114-exon-sc0000319-1575043694:81487..81792TCONS_00019114-exon-sc0000319-1575043694:81487..81792Clytia hemisphaericaexon
TCONS_00019114-exon-sc0000319-1510915933:81853..82705TCONS_00019114-exon-sc0000319-1510915933:81853..82705Clytia hemisphaericaexon
TCONS_00019114-exon-sc0000319-1510915933:81487..81792TCONS_00019114-exon-sc0000319-1510915933:81487..81792Clytia hemisphaericaexon
TCONS_00019114-exon-sc0000319-1491911889:81853..82705TCONS_00019114-exon-sc0000319-1491911889:81853..82705Clytia hemisphaericaexon
TCONS_00019114-exon-sc0000319-1491911889:81487..81792TCONS_00019114-exon-sc0000319-1491911889:81487..81792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:81487..82705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112035	0.327755	0.845678	0.413682	0.151085	0.557152	0.528142	1.25857	0.912627	2.37781	10.3291	1.69127	1234.05	1095.4	255.317	250.327	80.5719	107.094	0.158794	2.03554	0.0361073	0	0.128457	0.0778574	0.0400957	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
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BLAST of TCONS_00019114 vs. Swiss-Prot (Human)
Match: ANGL7 (Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.395e-40
Identity = 88/224 (39.29%), Postives = 122/224 (54.46%), Query Frame = -3 
Query:  162 DPMTDCLDFYNAGHKKNGLYLLGRRAF---SSQQIFCDQTTQGGGWTVFQRRHDGSVDFQQNWATYRSGFGSLLGEFWLGNEHIRDLTKSPFAPKKSQLLINMRMKRKTQMVYAKYEQFSIGDEMDKYLLFLGKQLTGNVPSLTVFNNHNNTRFSTYDQDNDKWPRSCSQSYGRAGWWYTSCYNTLLNGVYKFTSPSRGE---IAWQ--NGRTLLPEFVEMKFR 809
            D + DC   Y   ++ +G+Y L    F      ++FCD  T GGGWT+ QRR  G V F ++W  Y+ GFGS+ G+FWLGNEHI  L++ P     ++L + M    +  + YA+Y  F +G+E++ Y LFLG   TGNV +      HNNT FST D+DND     C+Q   + G+WY  C ++ LNGVY            I W   +G T   + VEMK R
Sbjct:  126 DAIYDCSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWKQYKQGFGSIRGDFWLGNEHIHRLSRQP-----TRLRVEME-DWEGNLRYAEYSHFVLGNELNSYRLFLG-NYTGNVGN-DALQYHNNTAFSTKDKDNDNCLDKCAQ-LRKGGYWYNCCTDSNLNGVYYRLGEHNKHLDGITWYGWHGSTYSLKRVEMKIR 340
The following BLAST results are available for this feature:
BLAST of TCONS_00019114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL78.395e-4039.29Angiopoietin-related protein 7 OS=Homo sapiens GN=... [more]
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