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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019113 ID=TCONS_00019113|Name=TCONS_00019113|organism=Clytia hemisphaerica|type=transcript|length=7539bpRun BLAST on NCBI transcript from alignment at sc0000319:66822..160035- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019113 ID=TCONS_00019113|Name=TCONS_00019113|organism=Clytia hemisphaerica|type=transcript|length=93214bp|location=Sequence derived from alignment at sc0000319:66822..160035- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019113 vs. Swiss-Prot (Human)
Match: CFA54 (Cilia- and flagella-associated protein 54 OS=Homo sapiens GN=CFAP54 PE=2 SV=3) HSP 1 Score: 526.939 bits (1356), Expect = 6.968e-151 Identity = 411/1341 (30.65%), Postives = 664/1341 (49.52%), Query Frame = 3
Query: 162 KSVNSLKTLWDNYCLKLKRSLYTEKVLWMGDYLFSQKCYKLSGYYCYGHFLQTLFNFTFD----DIASMNGERFMSLFVTGNTDLINTLRCLMGYAASIIYHHISLDESLQNQKTISIVVNFLKVLQLSMQVALMEDAHCWLVYNGTIHIHCISKLLMTKGFASSVLEFLIWSCVSMECSVPLMTVKYLGWRTQLYATTSLCFYDLKADQAAEEFAKRGMKKVLELQEIEKISTSPVTPETKFVFKQSRIKMDALIFKRHIFESRRRPKGVLRPKIKPLLKDIAGNNWPRTGTERMLADIFTGRAAQFLAITETLSNSNRRIGQTSPGCSETDETAT-DVFMELFFAGTEIVSGGGGTRTHISAKHEKSVQNVTKDMTLIDLATAESQTISLKSVLQFIKYAYNYEQWDTFDTLLPPVLDELKKHPDDELCIAEIKVLKIFAGMTSINSSRLRKKFVMLKTEDLGEMSLSRNY--KAAHIEELLNTALSLKDVLEQKNLKFY--------VERYHDFFVDVILLLWNKCKTYFAKVTSDSCDAHKSLYHSFFFTKWLQIFLITHDALMKFNMADADPNIVAESTLKLSHVLLCIAKMRELKIDRPVSPVESFERSNQELDTVKSPINIPTPKTEESKRGSFSEELFEDVTSFLYI--PNHTSKLL-AY-VLDL------LTQCLEQLDNARDKMTHLETK----IADDSFEDKQAENGEETINISMLKLKSFQMELLYLHHQVS------LQLPQQTLVPSNVKGTIPEKRSKEKSSKIQNSTTVQAIPTDAGKNSLSKALYRM--ALLKVAKCSMSVQETSKVIQEAFDLLEKARASEERIKREGESVSTTSLSGTKTSIPPPPQVVRRGHTTITYRPAPFEPSNGDVIASYCLFVRNAAGHNVKVRVSDTNFPGTGEKVPFGKDLTLTVTKLVPNERYMAAIAAYNAEGDLIGSSIGMSGRPVLASNHLPLLLAYGYLARIAYLKDGYKVTKQCINILWNYFVQEQPEPKKYFQTVANDFKLKPKRLRLKNIEYSSEVVHRYFVESIFIGIEIDIKEGKLFYDSVSNGSSTRDNQIERLEKCERLLIALEMSGWLNDNQICLQSIVQIYGLLSPIIYWKFPIQPVLEVLCHVFGGLQEIQSSFKNRKQNATNDSLHHMVSCLTYHIATILVDYNRKSVALHVLDTGGKILGQLNPPDSATPQPTEKGEAFMXXXXXXXXXXXXXXGGANKISTDPTNGGVTCEQRAIDIFTSKLLKEGASEGELELTGAEDGXXXXXXXXXXPPLTAYKEVLKFKRRAHFLESFVSVIGKALKDRMFDSALDWTKEAVTWLTRRNEIIL 4073
+ SL +W Y +L Y EK+L +GD L K YKL+ CYG +LQ FN FD D+ F F L T L G DE+L+N++++ ++ L L+L MQVAL ++ CW+++NGTI+I+ I + LM G +S LE+L+W+ + ME VPL++++YL WR LY C YD A E FA+R + K+ EL+++E +S+S E++ F+++ +KM +IFKR +FESRR+ K V RPKI+ L+++ +WPRT TER+L ++F A+QFLA+ E LS+SNRRI QT P TDE DV ELF AG E++ ++I A + + K +L++L IS+ + ++FIK A+ YE+W F++ ++ L++ D E AE + + A IN R K ++ E+ E ++ Y K A + L T +D+ + V+ + VD I+ LW KCK ++ D K KW+ + ++ + + M D D +VAE TL+LS +L + SP F+ Q LD P+ T K + +G +T L I N +LL AY +LD L L L N + H K I D+++ + N M+ L +EL+ H+++ LQ+ Q V ++ PEK + S+ + T I KN+LSKA+Y M ALL K + S + +++ EA+ L+++ A + + + + ++ K+ +PPPP ++ R H ++T +PAPF ++ ++ YC+ A G KVR+++ + P +GE +P V L NE+Y+ A+AAY+ G L+G +IG + +P+L L + A +L ++AY Y++ K+ + +W+YFV + ++ ++N + +RL + +S ++ F+ +IF+ +I IKE LF D++ QI RL +CER+L+ALE+S +LND+ LQ++ Q YGLL+PIIY + PV+++L LQ + S ++K A+ +S+ HM++C ++I IL + +A+ +++ G K+L S E+ E + + K KTK + + N EQ A + + LLK EL+G ED + L VV A KEV+KFK++ FLE F V+ K + + F ++ T +L RRNE +L
Sbjct: 105 RCATSLFNIWTKYAPRLPADYYNEKLLKVGDSLCQMKEYKLALLQCYGRYLQQ-FNTNFDENKVDVTQFKATFFPKGFKDKTAGL--TFHALSGKNMCNYQLVCDSDENLKNKESVVQCLHILSSLRLIMQVALPQEHLCWIIFNGTIYIYTICRKLMVIGQSSKALEYLLWASMCMESLVPLLSLRYLTWRATLYTAVCQCCYDCHAGIHGEAFARRALAKIDELRQLELMSSSKSQEESRRYFREATMKMAVMIFKRGVFESRRKNKAVFRPKIRINLREVQTLSWPRTVTERLLDEMFDSTASQFLAVLEALSDSNRRILQTGPIV--TDEVEIHDVVSELFMAGKELL-----IMSNIGA---DGMLDFPK-TSLLELMIGRKDVISVDAAVKFIKLAFTYEEWSLFESSAVHLIYFLQRQDDPESKKAEKDLTLLIAMEPLINVK--RNKGLIFPLENYKEGQSTQIYLKKIAVHDTCLKTCGYSEDIFHLAATLYVCVCTAPQDVQPDKEIVVDTIMFLWQKCKLGIQRLNISRNDYAK-FTQKISTNKWIYLLWQINEVIHCYKMEDIDIVVVAEVTLRLSEILESLG-----------SPGRKFK---QSLDV---PLREGTNKFPGAPKG---------ITEILPILQKNPVEQLLFAYKLLDRAIGGINLNCMLTSLPNGSSVIDHCYAKRTHHIDGDTYKPLAS-------NSFMMDL---HLELIQAQHRIAVVLLDKLQVLQTPTVSKDISTKGPEKLKQSGST---DCFTELNIMNKIKKNTLSKAIYLMQKALLIFEKDATST-SSWELLMEAYSLIQRIEAEQNALYSYQKYLESS--KRKKSRVPPPPILLSRTHCSVTLKPAPF--TSEVKVSWYCILGCKAEGSYGKVRLNNNHLPNSGEAIPADGKSVFEVKGLETNEKYVFAVAAYSNNGKLVGGAIGETTKPILVYPPLSTITARMFLTQVAYQVGNYELAKKVFSPVWDYFVASPLQDEQSVICLSNIITITQRRLHSDILAETSSILLYLFLRNIFVTSDIKIKEENLFCDNIKGNEIFPSQQIARLIECERVLVALELSNFLNDSSYALQAVTQCYGLLAPIIYHNIVLVPVVQILIKCIVVLQGLPSIVCSKKHTASFESIQHMIACCIFYITKILRSWREYDLAVMIINYGKKMLDITPGCKSLFDGSNEQEE---MPEEDSSKKSLKTKKPQQILLPEKIN-----EQLA--LLETHLLKLTKQYVTSELSGGEDPIFLYPVVLNWSVKGAVKEVMKFKQKPRFLEFFTQVMLKCMNEEKFHLMVEVTTPVHDFLKRRNESLL 1374 HSP 2 Score: 157.918 bits (398), Expect = 5.524e-38 Identity = 101/326 (30.98%), Postives = 166/326 (50.92%), Query Frame = 1
Query: 6061 EMLTKTKQFDLAIQAMHELGNVMYHSNNIRSAYKWWCQALDNILQTTDALNNWKQF----VNIEDRTILS-----TKRLLDICGAKGCLLGGLITTSIAKYIHPTNIDVSTEICHLAASFFQALFCTSLVHPSAFHSYITYDISTEETVKQVIPGLHFFSDMHHLHCGNLTSHLIWLTTRL--IRNGFYLRCQPLLTLSHYMASTICKDINTTIEVKLLRIKSLSALERFEEAFHHFYHVVSGKMLPS--PADFIRAKVNTKHF-VFKNTKLITDQLNVHCLHQVCGININQSPYTNIYGRELCNKISIAQSGLLASVAELLNEIP 6996
++L + Q L +QA+H LG+++ + R+A+K WCQALD+I + D L+ WK+F N+ + ++ L G GCL G +I+ IA++I N++ T+ C L+A FQ L T+L HP A Y Y+I+ Q++PG+ FSD + ++ + L ++ L +R L PLL L Y S IC+DI +E ++L+I+ L L F EAF+ + GK +P PA + +A K F F + KL+T + N+ + ++ + + I L NK + ++ SVA +N +P
Sbjct: 1906 DVLQASNQRSLKVQALHSLGSLLIFAEKKRAAFKCWCQALDDIFRKPDVLHTWKEFGPSLTNVTNSHSPPGFKDYSEEFLSRVGIWGCLQGAVISAKIAQFIKSLNVEKKTDCCILSALLFQGLLRTTLPHPKAERCYAQYEIT------QLLPGIELFSDRYRADICSVIASLYYIIRELHFVRQN--LIVLPLLALYQYFVSGICQDITRNLEARILKIEVLIDLRFFSEAFYEISQIFYGKNMPCPIPAGY-KATGKMKIFQSFDSGKLLTSKENIQAIDELRNKGL-PAVLVTIGQPHLLNKFNFVKAYFFLSVAATINCVP 2221 HSP 3 Score: 116.701 bits (291), Expect = 1.404e-25 Identity = 142/528 (26.89%), Postives = 231/528 (43.75%), Query Frame = 3
Query: 4308 EIIASQSLDERVSSRKISITKGMSGSKIIGTKKIQVMTAEER-----IIKDAILRMQAVLPELWKTQQRKKKLRIVSQEELPWRSQMCLISAECHFNICLDKFYLMSR-RLGYPNLKFDERMMDFSWFTLSTTGVLMVSWVGCFKDQVQLHDKPVDRGGKTLEHEKNSKQTAEIYLMPSSSRQSVAVKVEKKLTPRPPRVLDQQEALKIKQDD--ARKLFILNLEQSYNYYQRAMVLAHRGQNWVLLQHICNKLIQSXXXXXXXXXXXXXXXDLTKHETPYTVIQLRPLIYNV--FYMAAEFLLDFLNNLKLEQDSNISLNND-----FPSSLQQ------SSELPDHHDVENISHVDYGNIKRVVMFAVEVLYYQEKWERLSSLIVKFNAITSDRFCTSLLPILVYAQQALHNRVQASTKPVPRITFDPNTGFPVQIEMERVTPDPIEIGAHIDPEGSDLYNVPD--DGLQYSIA------------PFNFDVSLERFRNAFDQKLYTVKQLEHARLLLVSYLAAKQ 5786
EI S + +R+ S+K + I I M A ER + K A + L L + ++K+ +S EE+PWR+QM L A HFN+ L K + ++ + G ++ R D + F+L +G ++ + K V+ + +D + + N AE + S+ + + E + D Q K+ D A + + + + Y +RAMVLAHRG W LLQ+ C L LL +DL K + + Q L +V FY+ AE L+D L ++L+ S+I D PS S L H +++++ VD I V+ ++EVLY EKWE L SL ++FN ++ +R+ + P+LVYAQ+ L R+Q P IT P + + E++T IG + S + + D L+ I+ P + +L FR ++ Y + + H+R LL +LA Q
Sbjct: 1402 EIGRSAEMQQRIRSKKKETLRDF----IFKNPAISEMVAHERNRRTSVRKAAQRYLMDYLNPLILSYVKRKRFHRLSLEEMPWRAQMNLYLAGAHFNLVLQKLWECTKMKFGTSHMMVSFRSCDPNMFSLYNSGTVLPTR----KLTVENYKAMLDFLLTAKKRKANLPSDAEEF----STFINSIMSDENMSKTQTVYDSDSQSGSSAKEKDRGANLCVMDHFMKIFLYCRRAMVLAHRGGYWTLLQNCCRALWN---FTQELQILLKQAVDLDK---TFPISQDGFLCTSVLPFYLGAELLIDML--IQLQNTSSIKPIEDKGEFSVPSCYGNIKNDNGGSSLTFEHPLDDVNVVDLKWIHDFVLKSLEVLYQVEKWETLVSLAIQFNTVSHERYTEQVTPLLVYAQRQLLLRIQKFKG--PDITQQPCARYEAEYG-EKITCRNF-IGKQLKINSSTIEATSNCTDLLKMLISSEYSRAKALVCVPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQ 1905 The following BLAST results are available for this feature:
BLAST of TCONS_00019113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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