TCONS_00019101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019101
Unique NameTCONS_00019101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019101 ID=TCONS_00019101|Name=TCONS_00019101|organism=Clytia hemisphaerica|type=transcript|length=473bp
ACACAGAGGAAGAAGAATGATCttgaatttacaaaaagattAAGTGGGAA
TAAGCAGCACAAACGGTTATTGGTGCCATGCCAATGTGGCAAAGCGCATG
AGTACCTTTACCAGGAATACAAACACCTCCCTTTGGACACGCTAGAGAAA
AAATaataTACGTATGGTACGGTGATTTTTGGAACAGTACGAAAACCGAT
GTATGTTTAATTTGATGGAATGGATTTGCCCGAAAATATCATTTGTCAAA
TTGATATCTCAAAAACTTCACATTCTTACTTACTTTATTACCTGAATCTT
AAACAATTTTAATCATAATTTGTTCGTACTAAGAATGAGTTATATGTATT
CTCATGCAAagtttatacttctagactatgtATGTTTAAATATTTGTATA
TTTTGTCGATCTTTTTATTTCTTACATCGTTTTCTATCGAATTCTTTATA
ATgaaatgaaatcttttttttta
Run BLAST on NCBI

transcript from alignment at sc0000319:298488..300067+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019101 ID=TCONS_00019101|Name=TCONS_00019101|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at sc0000319:298488..300067+ (Clytia hemisphaerica)
ACACAGAGGAAGAAGAATGATCttgaatttacaaaaagattAAGTGGGAA
TAAGGTAACAATTGTTTTATTATGAAAATCATTTGgggttaaaatttgaa
atctttatatccctattttcaaattatttgcgAAATATTATCAAGTACGT
GAAACGTGAAACCATTTTTCTAATAGGGGTATTAAAGTGTCAAAAAGATG
TGCCGTGTTTCTATCTTTAACCATAACTTTCCAAGGTtgatatcgttgga
aagatatttaaatGCGCTGAATTTTCCACTCATttatctttcaaaatttg
ttcaagaaagtgaaacaaaatgaaaaagaaaaaaacttcttgtagaataa
cACCCCTCGGTTTGATTGATAAATCGGAATATGATTTattataaaataat
ttattcTCATTTATCACCTGCGATTTCAGCAGCACAAACGGTTATTGGTG
CCATGCCAATGTGGCAAAGCGCATGAGTACCTTTACCAGGGTAAGATAGT
CTTATTTATGGATCCCAATCTCGTCCATGTGTGCTTTAGTGCTATTTAAT
GGACGCAGAGAATACACAGGTATTTTCAATACAATACGTTCCTCAGCAAT
GTAGATTATTGCTTGACAGTTCATATATgtcatatatttttttatgggTA
GCATTATCAATACAAATTCTAAGAATTTCTCTCCAACTACTACGTACTTC
ATTTGGAAATTATAGGTTTCATACATAgagtttttctttgcttatatttc
aaattcattaaaaacTCTTGTTTGTAGAGGGTTTATAAACTTTGAAACAG
TCAAAACTGTGACAGAGGAAGATTTTCACCAAAGTAAGTCCAAACCACAT
TGTTCCTGTAAATTTGAACTGTCAGAAAAATGCATAGTACTGCAGTCGAC
TTTTTGGAACAATAATAACCTGTGTGATAGCTTGCTTATCAGTAATCGGA
TGTAAAGGATTTTAGTTGTATAGAATTCAGATCAAAATATTGGGAATATA
TAATCATCTCTTTCTTATTTCAGAATACAAACACCTCCCTTTGGACACGC
TAGAGAAAAAATGTAAGTAAACAATCGTTTTATTTAAATGGGCTCTACCC
CGAAAGCTAAGATTTCACCTAATTAAAAACCAATCagaaatttttctctt
ctttttgttAGGACATATCCGTCAACCTAGGCACCAAAGACGTTTTTTGA
AAACTCGTGAAGTAATGTGTTCTTCTTATATTTATCTTATTATACTtttc
aaattcttcagaataTACGTATGGTACGGTGATTTTTGGAACAGTACGAA
AACCGATGTATGTTTAATTTGATGGAATGGATTTGCCCGAAAATATCATT
TGTCAAATTGATATCTCAAAAACTTCACATTCTTACTTACTTTATTACCT
GAATCTTAAACAATTTTAATCATAATTTGTTCGTACTAAGAATGAGTTAT
ATGTATTCTCATGCAAagtttatacttctagactatgtATGTTTAAATAT
TTGTATATTTTGTCGATCTTTTTATTTCTTACATCGTTTTCTATCGAATT
CTTTATAATgaaatgaaatcttttttttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010712XLOC_010712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019101-exon-sc0000319-1491911889:298488..298541TCONS_00019101-exon-sc0000319-1491911889:298488..298541Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1510915933:298488..298541TCONS_00019101-exon-sc0000319-1510915933:298488..298541Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1575043694:298488..298541TCONS_00019101-exon-sc0000319-1575043694:298488..298541Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1491911889:298917..298977TCONS_00019101-exon-sc0000319-1491911889:298917..298977Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1510915933:298917..298977TCONS_00019101-exon-sc0000319-1510915933:298917..298977Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1575043694:298917..298977TCONS_00019101-exon-sc0000319-1575043694:298917..298977Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1491911889:299511..299549TCONS_00019101-exon-sc0000319-1491911889:299511..299549Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1510915933:299511..299549TCONS_00019101-exon-sc0000319-1510915933:299511..299549Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1575043694:299511..299549TCONS_00019101-exon-sc0000319-1575043694:299511..299549Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1491911889:299749..300067TCONS_00019101-exon-sc0000319-1491911889:299749..300067Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1510915933:299749..300067TCONS_00019101-exon-sc0000319-1510915933:299749..300067Clytia hemisphaericaexon
TCONS_00019101-exon-sc0000319-1575043694:299749..300067TCONS_00019101-exon-sc0000319-1575043694:299749..300067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:298488..300067 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.558749	0	0	1.08575	0	0	0	0	0.779253	1.79076	2.228	0	0.589148	0.971171	0	0.528074	0	0	0	0	0.390495	0.838691	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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